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Conserved domains on  [gi|511761018|ref|WP_016394221|]
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ABC-type transport auxiliary lipoprotein family protein [Pseudomonas plecoglossicida]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-198 3.10e-55

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 174.41  E-value: 3.10e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  20 CSILPQREPVDIYRLPVNQASRSATS-VDWSLRLNKPLASEVLASPRIAVIPQGDVVSSYKGARWSDPAPLLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAGpLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  99 FQRDGRVQRLSADDSNLQADYELAGELQAFQSEYRPGGKvEVVIRYDARLVQGRSQRILASKRFEVRQPLADTQVAGVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170       180
                 ....*....|....*....|
gi 511761018 179 GFGAASDQLAGQVVNWTVAQ 198
Cdd:COG3218  181 ALNQALDQLLAEIVAWLAAQ 200
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-198 3.10e-55

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 174.41  E-value: 3.10e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  20 CSILPQREPVDIYRLPVNQASRSATS-VDWSLRLNKPLASEVLASPRIAVIPQGDVVSSYKGARWSDPAPLLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAGpLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  99 FQRDGRVQRLSADDSNLQADYELAGELQAFQSEYRPGGKvEVVIRYDARLVQGRSQRILASKRFEVRQPLADTQVAGVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170       180
                 ....*....|....*....|
gi 511761018 179 GFGAASDQLAGQVVNWTVAQ 198
Cdd:COG3218  181 ALNQALDQLLAEIVAWLAAQ 200
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 35-191 1.27e-17

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 76.21  E-value: 1.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018   35 PVNQASRSATSVDWSLRLNKPLASEVLASPRIAVIPQGDVVSSYKGARWSDPAPLLLRNRLLDGFQRDGRVQRLSA--DD 112
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511761018  113 SNLQADYELAGELQAFQSeyRPGGKVEVVIRYdaRLVQGRSQRILASKRFEVRQPLADTQVAGVVAGFGAASDQLAGQV 191
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDG--RPGGNAVLEARW--TLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-198 3.10e-55

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 174.41  E-value: 3.10e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  20 CSILPQREPVDIYRLPVNQASRSATS-VDWSLRLNKPLASEVLASPRIAVIPQGDVVSSYKGARWSDPAPLLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAGpLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  99 FQRDGRVQRLSADDSNLQADYELAGELQAFQSEYRPGGKvEVVIRYDARLVQGRSQRILASKRFEVRQPLADTQVAGVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170       180
                 ....*....|....*....|
gi 511761018 179 GFGAASDQLAGQVVNWTVAQ 198
Cdd:COG3218  181 ALNQALDQLLAEIVAWLAAQ 200
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 35-191 1.27e-17

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 76.21  E-value: 1.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018   35 PVNQASRSATSVDWSLRLNKPLASEVLASPRIAVIPQGDVVSSYKGARWSDPAPLLLRNRLLDGFQRDGRVQRLSA--DD 112
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511761018  113 SNLQADYELAGELQAFQSeyRPGGKVEVVIRYdaRLVQGRSQRILASKRFEVRQPLADTQVAGVVAGFGAASDQLAGQV 191
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDG--RPGGNAVLEARW--TLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-206 4.70e-08

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 51.14  E-value: 4.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018   1 MNPSLRLLALAATLNLATACSILPqrePVDIYRLPVNQA--SRSATSVDWSLRLNKPLASEVLASPRIaVIPQGDV-VSS 77
Cdd:COG3009    1 MKRPLRLLLLLLLALLLAACASSP---PTRYYTLPPPAApaAAAAAAAAPVIEVGPVSLPDYLDRPQI-VYRTGDGrLVI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511761018  78 YKGARWSDPAPLLLRNRLLDGFQRDGRVQRLSA--DDSNLQADYELAGELQAFQSeyRPGGKVEVVIRYdaRLVQGRSQR 155
Cdd:COG3009   77 AENHRWAEPLSDQLTRALAANLAARLPGARVAAqpWPLAGRPDYRLRVDVTRFDG--RPDGQAVLSAQW--SLRRGGGGG 152

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 511761018 156 ILASKRFEVRQPLADTQVAGVVAGFGAASDQLAGQvvnwtVAQSAQAQAKN 206
Cdd:COG3009  153 PLLSRRFSIEEPLAGDGYDALVAALSQALAQLADQ-----IAAALAALPAA 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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