|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10814 |
PRK10814 |
lipoprotein-releasing ABC transporter permease subunit LolC; |
1-398 |
0e+00 |
|
lipoprotein-releasing ABC transporter permease subunit LolC;
Pssm-ID: 182753 [Multi-domain] Cd Length: 399 Bit Score: 692.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 1 MYKPVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYINDDIL 80
Cdd:PRK10814 1 MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAIITSEHGSLNPQQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 81 PADRIKLDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSPYLVNVSQSVLQPGEYNVILGEQIAAQLGVNRGD 160
Cdd:PRK10814 81 PASALKLDGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLQPGKYNVILGEQLAGQLGVKRGD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 161 KVRIMVPSASQFTPLGRLPAQRLFTVAGIFAAGSDIDKSELLVNIQDASRLMRYPSGSFSGWRLWLTAPLQVGELSRQTL 240
Cdd:PRK10814 161 QIRLMVPSASQFTPMGRIPSQRLFTVIGTFAANSEVDGYQMLVNQQDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 241 PDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVS 320
Cdd:PRK10814 241 PEGTVWKDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLLVMEKQGEVAILQTQGLTRRQIMMVFMVQGAS 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510911826 321 TGVIGALVGAVSGIVLAGQLNNLMPVTGLLTGNIELPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALRY 398
Cdd:PRK10814 321 AGIIGALLGALLGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRY 398
|
|
| lolCE |
TIGR02212 |
lipoprotein releasing system, transmembrane protein, LolC/E family; This model describes the ... |
4-398 |
1.27e-156 |
|
lipoprotein releasing system, transmembrane protein, LolC/E family; This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274034 [Multi-domain] Cd Length: 411 Bit Score: 447.49 E-value: 1.27e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 4 PVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYIND-DILPA 82
Cdd:TIGR02212 1 PLSLFIALRYLRAKRRNRFVSFISLFSIIGIALGVAALIVVLSVMNGFERELLQRILGVIPHAIIESKQNPIIDwQELLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 83 DRIKLDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSPYLVNVSQSVLQ---PGEYNVILGEQIAAQLGVNRG 159
Cdd:TIGR02212 81 RILKNPGVKAAAPIVSGQALVQSAGKVSGVQVRGVDPSDEDKLSAISNNVKQGALKgfkPGEYNIIIGEQLAEKLGVSVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 160 DKVRIMVPSaSQFTPLGRLPAQRLFTVAGIFAAGSDIDKSELLVNIQDASRLMRYPsGSFSGWRLWLTAPLQVGELSRQ- 238
Cdd:TIGR02212 161 DKITLISPE-SNVTPFGEIPRQKRFTVIGIFSTGGEVDGYLALMPLEDAQRFLRYG-DQVTGLRLKLDDPFQADALAQQv 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 239 --TLPDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIV 316
Cdd:TIGR02212 239 epELGPELYVRDWTDQNGELFSAIQMEKNMMFLILSLIIAVAAFNIVSTLVMAVKDKQGDIAILRTLGATPGQIMRIFIV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 317 QGVSTGVIGALVGAVSGIVLAGQLNNLMPVTGLLTG----NIE------LPVATEPLQVIFVVLATILISLLSTLYPAWK 386
Cdd:TIGR02212 319 QGLLIGVIGTLLGVILGVLLALNLTTIINFIEWLIGvkffNADiyfldfLPSKLDPLDVLLIIVTALLLSLLATLYPAWR 398
|
410
....*....|..
gi 510911826 387 AASIPPAEALRY 398
Cdd:TIGR02212 399 AAKLQPAEALRY 410
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
140-398 |
3.62e-59 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 193.98 E-value: 3.62e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 140 GEYNVILGEQIAAQLGVNRGDKVRIMVPSASqftplgrlPAQRLFTVAGIFAAGS-DIDKSELLVNIQDASRLMRYPsGS 218
Cdd:COG4591 32 ASDEVVLGEGLAKKLGLKVGDTITLISPDGS--------PKTRRFTVVGIFESGGyELDGSLVYVPLETAQELLGLG-DQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 219 FSGWRLWLTAPLQVGELSRQ--TLPDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAE 296
Cdd:COG4591 103 VSGILVKLKDGADAEAVAAAleAALPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTRE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 297 VAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGIVLAGQLNNLMPVtgLLTGNIELPVATEPLQVIFVVLATILIS 376
Cdd:COG4591 183 IGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGI--LLPFIFALPVSLSPSDVLLALLLALLIS 260
|
250 260
....*....|....*....|..
gi 510911826 377 LLSTLYPAWKAASIPPAEALRY 398
Cdd:COG4591 261 LLASLYPARRAARLDPVEALRG 282
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
268-392 |
2.76e-11 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 60.34 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 268 GLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGIVLAGQLNNLmpvt 347
Cdd:pfam02687 1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAIL---- 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 510911826 348 gLLTGNIELPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPP 392
Cdd:pfam02687 77 -LYSSGISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10814 |
PRK10814 |
lipoprotein-releasing ABC transporter permease subunit LolC; |
1-398 |
0e+00 |
|
lipoprotein-releasing ABC transporter permease subunit LolC;
Pssm-ID: 182753 [Multi-domain] Cd Length: 399 Bit Score: 692.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 1 MYKPVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYINDDIL 80
Cdd:PRK10814 1 MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAIITSEHGSLNPQQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 81 PADRIKLDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSPYLVNVSQSVLQPGEYNVILGEQIAAQLGVNRGD 160
Cdd:PRK10814 81 PASALKLDGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLQPGKYNVILGEQLAGQLGVKRGD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 161 KVRIMVPSASQFTPLGRLPAQRLFTVAGIFAAGSDIDKSELLVNIQDASRLMRYPSGSFSGWRLWLTAPLQVGELSRQTL 240
Cdd:PRK10814 161 QIRLMVPSASQFTPMGRIPSQRLFTVIGTFAANSEVDGYQMLVNQQDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 241 PDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVS 320
Cdd:PRK10814 241 PEGTVWKDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLLVMEKQGEVAILQTQGLTRRQIMMVFMVQGAS 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510911826 321 TGVIGALVGAVSGIVLAGQLNNLMPVTGLLTGNIELPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALRY 398
Cdd:PRK10814 321 AGIIGALLGALLGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRY 398
|
|
| lolCE |
TIGR02212 |
lipoprotein releasing system, transmembrane protein, LolC/E family; This model describes the ... |
4-398 |
1.27e-156 |
|
lipoprotein releasing system, transmembrane protein, LolC/E family; This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274034 [Multi-domain] Cd Length: 411 Bit Score: 447.49 E-value: 1.27e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 4 PVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYIND-DILPA 82
Cdd:TIGR02212 1 PLSLFIALRYLRAKRRNRFVSFISLFSIIGIALGVAALIVVLSVMNGFERELLQRILGVIPHAIIESKQNPIIDwQELLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 83 DRIKLDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSPYLVNVSQSVLQ---PGEYNVILGEQIAAQLGVNRG 159
Cdd:TIGR02212 81 RILKNPGVKAAAPIVSGQALVQSAGKVSGVQVRGVDPSDEDKLSAISNNVKQGALKgfkPGEYNIIIGEQLAEKLGVSVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 160 DKVRIMVPSaSQFTPLGRLPAQRLFTVAGIFAAGSDIDKSELLVNIQDASRLMRYPsGSFSGWRLWLTAPLQVGELSRQ- 238
Cdd:TIGR02212 161 DKITLISPE-SNVTPFGEIPRQKRFTVIGIFSTGGEVDGYLALMPLEDAQRFLRYG-DQVTGLRLKLDDPFQADALAQQv 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 239 --TLPDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIV 316
Cdd:TIGR02212 239 epELGPELYVRDWTDQNGELFSAIQMEKNMMFLILSLIIAVAAFNIVSTLVMAVKDKQGDIAILRTLGATPGQIMRIFIV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 317 QGVSTGVIGALVGAVSGIVLAGQLNNLMPVTGLLTG----NIE------LPVATEPLQVIFVVLATILISLLSTLYPAWK 386
Cdd:TIGR02212 319 QGLLIGVIGTLLGVILGVLLALNLTTIINFIEWLIGvkffNADiyfldfLPSKLDPLDVLLIIVTALLLSLLATLYPAWR 398
|
410
....*....|..
gi 510911826 387 AASIPPAEALRY 398
Cdd:TIGR02212 399 AAKLQPAEALRY 410
|
|
| PRK11146 |
PRK11146 |
lipoprotein-releasing ABC transporter permease subunit LolE; |
4-396 |
1.99e-60 |
|
lipoprotein-releasing ABC transporter permease subunit LolE;
Pssm-ID: 236860 [Multi-domain] Cd Length: 412 Bit Score: 200.90 E-value: 1.99e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 4 PVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYINDDILPAD 83
Cdd:PRK11146 2 PLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVNQPFTNWQEALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 84 RIK-LDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSP---YLVNVSQSVLQPGEYNVILGEQIAAQLGVNRG 159
Cdd:PRK11146 82 RVQkVPGIAAAAPYVNFTGLVENGAKLKAVQVKGVDPQQEQRVSAlpsFVQNDAWQNFKAGEQQIILGKGVADALKVKQG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 160 DKVRIMVPSASQFTPLGRLPAQRLfTVAGIFAAGSDIDKSELLVNIQDASRLMRYPSGsFSGWRLWLTAPLQVGELSR-- 237
Cdd:PRK11146 162 DWVTLMIPNSNPDHKLLQPKRVRL-QVAGILQLSGQLDHSLALIPLADAQQYLDMGDS-VTGIALKVTDVFNANKLVRda 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 238 -QTLPDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIV 316
Cdd:PRK11146 240 gEVTNSYVYIKSWIGTYGYMYRDIQMIRTIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAILRTLGAKDGLIRAIFVW 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 317 QGVSTGVIGALVGAVSGIVLAGQLNNLMP----VTG--LLTGNIE----LPVATEPLQVIFVVLATILISLLSTLYPAWK 386
Cdd:PRK11146 320 YGLLAGLKGSLIGVVIGVVVSLNLTPIIKgiekLIGhqFLSGDIYfidfLPSELHWLDVFYVLVTALVLSLLASWYPARR 399
|
410
....*....|
gi 510911826 387 AASIPPAEAL 396
Cdd:PRK11146 400 ASKLDPARVL 409
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
140-398 |
3.62e-59 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 193.98 E-value: 3.62e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 140 GEYNVILGEQIAAQLGVNRGDKVRIMVPSASqftplgrlPAQRLFTVAGIFAAGS-DIDKSELLVNIQDASRLMRYPsGS 218
Cdd:COG4591 32 ASDEVVLGEGLAKKLGLKVGDTITLISPDGS--------PKTRRFTVVGIFESGGyELDGSLVYVPLETAQELLGLG-DQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 219 FSGWRLWLTAPLQVGELSRQ--TLPDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAE 296
Cdd:COG4591 103 VSGILVKLKDGADAEAVAAAleAALPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTRE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 297 VAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGIVLAGQLNNLMPVtgLLTGNIELPVATEPLQVIFVVLATILIS 376
Cdd:COG4591 183 IGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGI--LLPFIFALPVSLSPSDVLLALLLALLIS 260
|
250 260
....*....|....*....|..
gi 510911826 377 LLSTLYPAWKAASIPPAEALRY 398
Cdd:COG4591 261 LLASLYPARRAARLDPVEALRG 282
|
|
| lolE_release |
TIGR02213 |
lipoprotein releasing system, transmembrane protein LolE; This protein is part of an unusual ... |
4-396 |
6.91e-54 |
|
lipoprotein releasing system, transmembrane protein LolE; This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131268 [Multi-domain] Cd Length: 411 Bit Score: 183.89 E-value: 6.91e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 4 PVTVFIGLRYKYGSAADRFSRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHA-ILSAEKGYINDDILPA 82
Cdd:TIGR02213 1 NLPLLIGWRFSRGKQRNPMVSLISKFSTIGIALGVAVLIVGLSAMNGFERELNQRILAVVPHAeIESVPPPIHNWQNLEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 83 DRIKLDGVQRIAPLTTGEVVLQSAGNVAAGIMLGIGPAEKDPLSPYLVNVSQ---SVLQPGEYNVILGEQIAAQLGVNRG 159
Cdd:TIGR02213 81 RLQQNPQIKAAAPYVSFTGLVENGSKLKAVQVKGVEPQAEQKVSSIGNFVQEqawNKFEKGEGQLILGSGVAKELDVKVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 160 DKVRIMVPSASQFTPLGRlPAQRLFTVAGIFAAGSDIDKSELLVNIQDASRLMRYPSGsFSGWRLWLTAPLQVGELSRQT 239
Cdd:TIGR02213 161 DWVTLLIPQQNGDEKFAQ-PKRVRVQVTGILRLDGQLDHSYALLPLADAQQYLTYGDQ-VTGIALKLDDVFNARNLVRSM 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 240 L---PDGITWTDWRERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIV 316
Cdd:TIGR02213 239 GndyPQYVYMQSWISKFGYMYRDIQLIRTIMYLAMVLVIGVACFNIVSTLIMAVKDKQGDIAILRTLGANDGLIKRIFVW 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 317 QGVSTGVIGALVGAVSGIVLAGQLNNLMP----VTG--LLTGNIE----LPVATEPLQVIFVVLATILISLLSTLYPAWK 386
Cdd:TIGR02213 319 YGLQAGMKGSLIGIVLGVIVALNLTTFIQgiewVIGhqFLSGDIYfvdfLPSELHWLDVLMVLVTALALSLMASWYPASR 398
|
410
....*....|
gi 510911826 387 AASIPPAEAL 396
Cdd:TIGR02213 399 AAKLQPAQVL 408
|
|
| SalY |
COG0577 |
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; |
23-398 |
1.11e-21 |
|
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
Pssm-ID: 440342 [Multi-domain] Cd Length: 339 Bit Score: 94.96 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 23 SRFVSWLSTIGITLGVMALITVLSVMNGFERELQKNILDLMPHAILSAEKGYINDDILPADRI-----KLDGVQRIAPLT 97
Cdd:COG0577 13 NKLRSLLTVLGIAIGIALVIAILALGRGLRRSLLRDLDSLGFDLLTVSRTPGGSRATLSYEDLrealrALPGVESVAPSS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 98 TGEVVLQSAGNVAAGI-MLGIGPAEKDPLSPYLV---NVSQSVLQPGEYNVILGEQIAAQLGVNR---GDKVRImvpsas 170
Cdd:COG0577 93 SGSATVRYGGGEPPSVrVLGVDPDYFRVLGIPLLagrFFTAADDLGAPPVVVIGEALARRLFGGEdpvGKTIRL------ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 171 qftplgrlpAQRLFTVAGIFAAgsdidksellvNIQDASRlMRYPSGSFSGWRLwltaplqvgelsrqtlpdgitwtdwR 250
Cdd:COG0577 167 ---------NGRPFTVVGVVEA-----------ELRALLR-RRDPGDDFEVQTL-------------------------D 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 251 ERKGELFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGA 330
Cdd:COG0577 201 EILAALYGVLRTLTLLLGAIAGLALLVACIGIMNLMLASVTERTREIGIRKALGASRRDILRQFLTEALLLALLGGLLGL 280
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510911826 331 VSGIVLAGQLNNLMPvtglltgnieLPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALRY 398
Cdd:COG0577 281 LLALLLLRLLAALLG----------LPVSLDPWVLLLALALSLLVGLLAGLYPARRAARLDPVEALRS 338
|
|
| YbbP |
COG3127 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ... |
139-397 |
3.32e-19 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 89.86 E-value: 3.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 139 PGEYNVILGEQIAAQLGVNRGDKVRImvpsasqftplgrlpAQRLFTVAGIFAAGSDIDKS------ELLVNIQD--ASR 210
Cdd:COG3127 133 PAPGEVWVDPRLLARLGLKVGDTIRL---------------GDATFTIAGVLTREPDRGGGgfslapRVLINLADleATG 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 211 LMRYpsGSFSGWRLWLTAP----LQVGELSRQTLPDGITWTDWRERKGELFQA-QRMEKNImgLLLSLI-VIVAAFNIIT 284
Cdd:COG3127 198 LIQP--GSRVRYRYLVAGPdadlEALRAWLEPALPAGQRVRTVEDARPELGRAlDRAEQFL--LLVALLaLLLAGVAVAN 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 285 SLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGI----VLAGQLNNLMPVtglltgniELPVAT 360
Cdd:COG3127 274 AARRYVARRLDTIALLRCLGASRRQIFRIYLLQLLLLGLLGSLLGLLLGAllqaLLAALLADLLPV--------PLEPAL 345
|
250 260 270
....*....|....*....|....*....|....*..
gi 510911826 361 EPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALR 397
Cdd:COG3127 346 SPLPLLLGLLVGLLVLLLFALPPLLRLRRVPPLRVLR 382
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
268-392 |
2.76e-11 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 60.34 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 268 GLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGIVLAGQLNNLmpvt 347
Cdd:pfam02687 1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAIL---- 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 510911826 348 gLLTGNIELPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPP 392
Cdd:pfam02687 77 -LYSSGISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
|
|
| YbbP |
COG3127 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ... |
269-397 |
7.79e-10 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 60.58 E-value: 7.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 269 LLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGALVGAVSGIVLAGqlnnlmpvtG 348
Cdd:COG3127 709 FLAGFALLAGLLVLAAALAASRDERTREAALLRTLGASRRQLRRALALEFALLGLLAGLLAALLAELAGW---------A 779
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 510911826 349 LLTGNIELPVATEPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALR 397
Cdd:COG3127 780 LARFVFDLPFSPPWWLWLAGLLGGALLVLLAGLLGARRVLRQPPLEVLR 828
|
|
| MacB_PCD |
pfam12704 |
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ... |
27-213 |
1.79e-07 |
|
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 51.38 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 27 SWLSTIGITLGVMALITVLSVMNGFERELQK------NILDLMPHAILSAEKGYINDDILPADRIKLDGVQRIAPLTTGE 100
Cdd:pfam12704 1 TALTVLGIAIGVAAVIAILSLGDGLLSAVPEqisdsdNLVVVQPGAAGGGGTRPPLSDPDAEALRRAVPVEAVAPVVSTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 101 VVLQSAGNVAAGIMlGIGPAEKDPLSPYLV---NVSQSVLQPGEYNVILGEQIAAQLGVNR---GDKVRIMvpsasqftp 174
Cdd:pfam12704 81 RYGNSTTERLVTVV-GVDPDFFKVFGLPLAegrFFTEADVLGGPNVVVLGESLAEKLFGGDdpvGKTIRLN--------- 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 510911826 175 lgrlpaQRLFTVAGIFAA--GSDIDKSELLVNIQDASRLMR 213
Cdd:pfam12704 151 ------GQPFTVVGVLPDfpGSDGGGDLVYVPLTTLQRRLG 185
|
|
| FtsX |
COG2177 |
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning]; |
248-381 |
8.75e-06 |
|
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441780 [Multi-domain] Cd Length: 292 Bit Score: 47.13 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510911826 248 DWRERkgeLFQAQRMEKNIMGLLLSLIVIVAAFNIITSLGLMVMDKQAEVAVLQTQGLTSRQVMMVFIVQGVSTGVIGAL 327
Cdd:COG2177 154 EWVER---LFALLNLLRLVGLVLAALLLLAAVLLIGNTIRLAIYSRREEIEIMKLVGATDGFIRRPFLLEGALLGLLGGL 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 510911826 328 VGAVSGIVLAGQLNNlmPVTGLLTGNIELPVATEPLQVIFVVLAT-ILISLLSTL 381
Cdd:COG2177 231 LALLLLALLYLLLVS--ALADGLAFLSLLSLGGLLLLLLLLLLLLgALLGALGSR 283
|
|
| ADOP |
TIGR03434 |
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ... |
326-398 |
7.51e-04 |
|
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 41.73 E-value: 7.51e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 510911826 326 ALVGAVSGIVLAGQLNNLMpvTGLLTGnielpV-ATEPLQVIFVVLATILISLLSTLYPAWKAASIPPAEALRY 398
Cdd:TIGR03434 736 AAAGLAIGLAAALALARLL--ASLLFG-----VsPTDPLTFAAVAALLLAVALLACYLPARRAARVDPMIALRA 802
|
|
| |
