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Conserved domains on  [gi|510827487|ref|WP_016200594|]
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MULTISPECIES: YtxH domain-containing protein [Elizabethkingia]

Protein Classification

YtxH domain-containing protein( domain architecture ID 10009003)

YtxH domain-containing protein similar to Leishmania small hydrophilic endoplasmic reticulum-associated protein (SHERP), which may function in modulating cellular processes related to membrane organization and/or acidification during vector transmission of infective Leishmania

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
26-107 5.43e-10

Gas vesicle protein YhaH [General function prediction only];


:

Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 52.28  E-value: 5.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510827487  26 MLYAPEEGKATRKKIKAKANDLKDQAKDKYSDVSEKVKDqyntFASQAKDTYSKVTDSVKDSFDKYKSQAADKAKEVAKD 105
Cdd:COG4980   22 LLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASE----LSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEE 97


                 ..
gi 510827487 106 IE 107
Cdd:COG4980   98 AE 99
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
26-107 5.43e-10

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 52.28  E-value: 5.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510827487  26 MLYAPEEGKATRKKIKAKANDLKDQAKDKYSDVSEKVKDqyntFASQAKDTYSKVTDSVKDSFDKYKSQAADKAKEVAKD 105
Cdd:COG4980   22 LLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASE----LSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEE 97


                 ..
gi 510827487 106 IE 107
Cdd:COG4980   98 AE 99
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 26-85 4.29e-08

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 46.44  E-value: 4.29e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 510827487   26 MLYAPEEGKATRKKIKAKANDLKDQAKDKYSDVSEKVKDqyntFASQAKDTYSKVTDSVK 85
Cdd:pfam12732  16 LLLAPKSGKETRKDLKDKAEDLKDKAKDLAEEAKEKAED----LKEKVKEKADELKEKVK 71
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
26-107 5.43e-10

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 52.28  E-value: 5.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510827487  26 MLYAPEEGKATRKKIKAKANDLKDQAKDKYSDVSEKVKDqyntFASQAKDTYSKVTDSVKDSFDKYKSQAADKAKEVAKD 105
Cdd:COG4980   22 LLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASE----LSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEE 97


                 ..
gi 510827487 106 IE 107
Cdd:COG4980   98 AE 99
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 26-85 4.29e-08

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 46.44  E-value: 4.29e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 510827487   26 MLYAPEEGKATRKKIKAKANDLKDQAKDKYSDVSEKVKDqyntFASQAKDTYSKVTDSVK 85
Cdd:pfam12732  16 LLLAPKSGKETRKDLKDKAEDLKDKAKDLAEEAKEKAED----LKEKVKEKADELKEKVK 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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