TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
102-309
2.19e-47
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
:
Pssm-ID: 433039 Cd Length: 204 Bit Score: 166.76 E-value: 2.19e-47
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
646-750
1.30e-18
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
The actual alignment was detected with superfamily member pfam15615:
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 82.79 E-value: 1.30e-18
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
102-309
2.19e-47
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
Pssm-ID: 433039 Cd Length: 204 Bit Score: 166.76 E-value: 2.19e-47
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins ...
512-619
4.78e-21
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Pssm-ID: 143580 Cd Length: 111 Bit Score: 88.82 E-value: 4.78e-21
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
646-750
1.30e-18
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 82.79 E-value: 1.30e-18
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
102-309
2.19e-47
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
Pssm-ID: 433039 Cd Length: 204 Bit Score: 166.76 E-value: 2.19e-47
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins ...
512-619
4.78e-21
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Pssm-ID: 143580 Cd Length: 111 Bit Score: 88.82 E-value: 4.78e-21
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
646-750
1.30e-18
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 82.79 E-value: 1.30e-18
tellurium resistance terB-like protein; This family consists of tellurium resistance terB ...
516-617
2.10e-09
tellurium resistance terB-like protein; This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Pssm-ID: 143581 [Multi-domain] Cd Length: 104 Bit Score: 55.44 E-value: 2.10e-09
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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