|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
56-309 |
1.21e-81 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 250.79 E-value: 1.21e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQ 134
Cdd:COG1172 46 SNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAAlLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIP 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 135 PFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAA 214
Cdd:COG1172 126 PFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 215 KNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGM 294
Cdd:COG1172 206 RLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQP-NAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVL 284
|
250
....*....|....*
gi 507084792 295 NTGILLSGFPPELNQ 309
Cdd:COG1172 285 NNGLNLLGVSSYWQQ 299
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-309 |
1.64e-66 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 209.96 E-value: 1.64e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 62 AAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAAlLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 141 ILMVAGRGVAQLITSGQIVTFNSPELSW-FGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAGV 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 220 NTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGIL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQP-TAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250
....*....|
gi 507084792 300 LSGFPPELNQ 309
Cdd:cd06579 240 LLGVSSFWQQ 249
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
56-302 |
3.86e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 164.51 E-value: 3.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQP 135
Cdd:PRK09512 46 FNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 136 FVATLILMVAGRGVAQLITSGQIV----TFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINI 211
Cdd:PRK09512 126 FIATLVMMLLLRGVTMVYTDGSPIntgfTDNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 212 RAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALII 291
Cdd:PRK09512 206 AATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQP-TAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALIL 284
|
250
....*....|.
gi 507084792 292 QGMNTGILLSG 302
Cdd:PRK09512 285 GFLNNGLNLLG 295
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-307 |
5.05e-39 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 139.32 E-value: 5.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 54 SPIDILNRAAPVALLAIGMTLVIA-TGGIDLSVGAVMAIAGATTAAMTVA-GHSLPVVLLAALGSGILAGLWNGILVAIL 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGiAGVINLGHGGFMMLGAYVAAMLLNLlGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 132 KIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFP-----TPVIIALLTLVVFWLLTRKTALGMFIEA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLsfafaFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 207 VGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIgggslmGGRFNLLLSVV 286
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260
....*....|....*....|..
gi 507084792 287 GALIIQGMNT-GILLSGFPPEL 307
Cdd:pfam02653 235 GSLIIGLVQSlGLGALGSPPEL 256
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
45-309 |
1.99e-32 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 124.11 E-value: 1.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 45 ILQDGRLFgSPIDILN---RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTV-AGHSLPVVLLAALGSGILA 120
Cdd:NF040906 20 ILTGGILL-RPLNVTNlilQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVnWGMPWWLAVLLCLLVGALI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 121 GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSG--------------SLLL---------- 176
Cdd:NF040906 99 GAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflpdlfggtglhllTLLLgvlaaaalvw 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 177 -------------FPTP---------VIIALLTLVVFWLL-----------------------TRKTALGMFIEAVGINI 211
Cdd:NF040906 179 sqlrgrrrrikygLEVEpmalfiaklVLIAAAILFFTYLLasyrglpnvliilgvlilvysfvTNRTVIGRHIYAVGGNE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 212 RAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALII 291
Cdd:NF040906 259 KAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATP-KAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVM 337
|
330
....*....|....*...
gi 507084792 292 QGMNTGILLSGFPPELNQ 309
Cdd:NF040906 338 GVLNNGMSILGIGIDWQQ 355
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
56-309 |
1.21e-81 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 250.79 E-value: 1.21e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQ 134
Cdd:COG1172 46 SNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAAlLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIP 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 135 PFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAA 214
Cdd:COG1172 126 PFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 215 KNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGM 294
Cdd:COG1172 206 RLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQP-NAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVL 284
|
250
....*....|....*
gi 507084792 295 NTGILLSGFPPELNQ 309
Cdd:COG1172 285 NNGLNLLGVSSYWQQ 299
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-309 |
1.64e-66 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 209.96 E-value: 1.64e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 62 AAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAAlLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 141 ILMVAGRGVAQLITSGQIVTFNSPELSW-FGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAGV 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 220 NTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGIL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQP-TAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250
....*....|
gi 507084792 300 LSGFPPELNQ 309
Cdd:cd06579 240 LLGVSSFWQQ 249
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
58-305 |
1.48e-55 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 183.98 E-value: 1.48e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 58 ILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFV 137
Cdd:COG4158 59 IARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFI 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 138 ATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNA 217
Cdd:COG4158 139 VTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLT 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 218 GVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTG 297
Cdd:COG4158 219 GIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNG 298
|
....*...
gi 507084792 298 ILLSGFPP 305
Cdd:COG4158 299 LILLGVSD 306
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
45-309 |
8.69e-49 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 167.99 E-value: 8.69e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 45 ILQDGRLFgSPIDILN---RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILA 120
Cdd:COG4214 40 ILTGGTFL-TPRNLSNlllQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAvLMVNWGLPWWLAILAALLVGALI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 121 GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSG---------SLLL--------------- 176
Cdd:COG4214 119 GAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGflpdilgtlSWVLgavavaayvalqlrs 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 177 ----------------------------------------FPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKN 216
Cdd:COG4214 199 rrrrrryglpveplwlfvlklallavlilgavyllnsyrgIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARL 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 217 AGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADaNNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNT 296
Cdd:COG4214 279 SGINVRRVTFSVFVNMGVLAALAGIVFAARLNSAT-PSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNN 357
|
330
....*....|...
gi 507084792 297 GILLSGFPPELNQ 309
Cdd:COG4214 358 GMSLLGVDSDWQQ 370
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
56-302 |
3.86e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 164.51 E-value: 3.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQP 135
Cdd:PRK09512 46 FNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 136 FVATLILMVAGRGVAQLITSGQIV----TFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINI 211
Cdd:PRK09512 126 FIATLVMMLLLRGVTMVYTDGSPIntgfTDNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 212 RAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALII 291
Cdd:PRK09512 206 AATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQP-TAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALIL 284
|
250
....*....|.
gi 507084792 292 QGMNTGILLSG 302
Cdd:PRK09512 285 GFLNNGLNLLG 295
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-307 |
5.05e-39 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 139.32 E-value: 5.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 54 SPIDILNRAAPVALLAIGMTLVIA-TGGIDLSVGAVMAIAGATTAAMTVA-GHSLPVVLLAALGSGILAGLWNGILVAIL 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGiAGVINLGHGGFMMLGAYVAAMLLNLlGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 132 KIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFP-----TPVIIALLTLVVFWLLTRKTALGMFIEA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLsfafaFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 207 VGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIgggslmGGRFNLLLSVV 286
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260
....*....|....*....|..
gi 507084792 287 GALIIQGMNT-GILLSGFPPEL 307
Cdd:pfam02653 235 GSLIIGLVQSlGLGALGSPPEL 256
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
52-291 |
5.80e-39 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 140.58 E-value: 5.80e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 52 FGSPIDILNRAAPVAL---LAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILV 128
Cdd:PRK11285 50 FASFINMKGLGLAISMigmVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVAAGLLLGAAVGLVNGFVI 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 129 AILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVG 208
Cdd:PRK11285 130 ARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIG 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 209 INIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGA 288
Cdd:PRK11285 210 GNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQP-MTSIGFELIVISACVLGGVSLKGGIAKISGVVAGV 288
|
...
gi 507084792 289 LII 291
Cdd:PRK11285 289 LIL 291
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
56-305 |
7.43e-36 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 131.82 E-value: 7.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAG-HSLPVVLLAALGSGILAGLWNGILVAILKIQ 134
Cdd:PRK09699 40 TQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGvDPFLAALIGGVLVGGALGAINGCLVNWTGLH 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 135 PFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAA 214
Cdd:PRK09699 120 PFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 215 KNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIrGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGM 294
Cdd:PRK09699 200 FYSGIDVKFHILVVFIISGVCAGLAGVVSTARL-GAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTI 278
|
250
....*....|.
gi 507084792 295 NTGILLSGFPP 305
Cdd:PRK09699 279 NNGLNILQVQT 289
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
58-304 |
2.81e-35 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 131.39 E-value: 2.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 58 ILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFV 137
Cdd:PRK15432 40 VFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 138 ATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLF-PTPVIIALLTLVVFWLLTrKTALGMFIEAVGINIRAAKN 216
Cdd:PRK15432 120 ATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGIsPIGWLTLILILAMAWLLA-KTAFGRSFYATGDNLQGARQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 217 AGVNTRIIVMLTYVLSGLCAAIAGIIVTADIrGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNT 296
Cdd:PRK15432 199 LGVRTEAIRIVAFSLNGCMAALAGIVFASQI-GFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDS 277
|
....*...
gi 507084792 297 GILLSGFP 304
Cdd:PRK15432 278 VLVLLRIP 285
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
45-309 |
1.99e-32 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 124.11 E-value: 1.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 45 ILQDGRLFgSPIDILN---RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTV-AGHSLPVVLLAALGSGILA 120
Cdd:NF040906 20 ILTGGILL-RPLNVTNlilQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVnWGMPWWLAVLLCLLVGALI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 121 GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSG--------------SLLL---------- 176
Cdd:NF040906 99 GAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflpdlfggtglhllTLLLgvlaaaalvw 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 177 -------------FPTP---------VIIALLTLVVFWLL-----------------------TRKTALGMFIEAVGINI 211
Cdd:NF040906 179 sqlrgrrrrikygLEVEpmalfiaklVLIAAAILFFTYLLasyrglpnvliilgvlilvysfvTNRTVIGRHIYAVGGNE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 212 RAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALII 291
Cdd:NF040906 259 KAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATP-KAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVM 337
|
330
....*....|....*...
gi 507084792 292 QGMNTGILLSGFPPELNQ 309
Cdd:NF040906 338 GVLNNGMSILGIGIDWQQ 355
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
56-305 |
1.32e-28 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 112.86 E-value: 1.32e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGH------------SLPVVLLAALGSGILAGLW 123
Cdd:PRK09478 43 SNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankvfpelatmPIALVILIVCAIGAVIGLI 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 124 NGILVAILKIQPFVATLILMVAGRGVAQLIT---SGQIVTFNSPELSWFGSGSLLL----FPTPVIIALLTLVVFWLLTR 196
Cdd:PRK09478 123 NGLIIAYLNVTPFIATLGTMIIVYGINSLYYdfvGASPISGFDSGFSTFAQGFVALgsfrLSYITFYALIAVAFVWVLWN 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 197 KTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGAdANNAGLWLELDAILAVVIGGGSLMG 276
Cdd:PRK09478 203 KTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSA-TNNLGFMYELDAIAACVVGGVSFSG 281
|
250 260
....*....|....*....|....*....
gi 507084792 277 GRFNLLLSVVGALIIQGMNTGILLSGFPP 305
Cdd:PRK09478 282 GVGTVIGVVTGVIIFTVINYGLTYIGVNP 310
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
57-290 |
1.11e-25 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 104.65 E-value: 1.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 57 DILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLA-ALGSGILAGLWNGILVAILKIQP 135
Cdd:PRK11618 37 NLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPlVLVMGAAFGAFMGALIHYLKLPA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 136 FVATLILMVAGRGVAQLItSGQIVTFNSP------ELSW--FGSGSLLLfptPVIIALLTLVVFWLLTRKTALGMFIEAV 207
Cdd:PRK11618 117 FIVTLAGMFLARGVSFLV-SEESIPINHPfydtlsSLAWklPGGGRLSA---MALIMLAVVAIGIFLAHRTRFGNNVYAI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 208 GINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRgADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVG 287
Cdd:PRK11618 193 GGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTS-AGYALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFG 271
|
...
gi 507084792 288 ALI 290
Cdd:PRK11618 272 VLI 274
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
66-307 |
2.98e-23 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 96.96 E-value: 2.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 66 ALLAIGMTLVIATGGI-DLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATLILMV 144
Cdd:cd06574 5 AILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 145 AGRGVAQLITSGQIVTFNS-----PELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAGV 219
Cdd:cd06574 85 GLYSINLRIMGGPNIPLGTrdtllGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 220 NTRIIVMLTYVLSGLCAAIAGIIVTADIRGADAnNAGLWLELDAILAVVIGGGSLMGGRFNLLLS--VVGALIIQGMNTG 297
Cdd:cd06574 165 NVDRTRILGLVISNALAALGGALYAQYQGFADV-NMGIGTGVIGLAAVIIGGAIVGRRTIKASILgvIIGAILYRIALAL 243
|
250
....*....|
gi 507084792 298 ILLSGFPPEL 307
Cdd:cd06574 244 ALGSGLIPSD 253
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
65-308 |
2.60e-19 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 87.19 E-value: 2.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 65 VALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATLILMV 144
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLY 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 145 AGRGVAQLI------TSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAG 218
Cdd:PRK15038 125 LFGGSALLLsgmagaTGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 219 VNTRIIVMLTYVLSGLCAAIAGIIVTADIrGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGI 298
Cdd:PRK15038 205 IPVNRTLCALYAMTGLASAIAAVLLVSYF-GSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGL 283
|
250
....*....|
gi 507084792 299 LLSGFPPELN 308
Cdd:PRK15038 284 QMAGVPNQIS 293
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
66-291 |
1.39e-16 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 78.57 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 66 ALLAIGMTLVIATGG-IDLSVGAVMAIAG-ATTAAMTVAGHSLPVVLLAALGSGILAGLwnGILVAILK-------IQPF 136
Cdd:COG0559 19 ALIALGLTLIFGVMGvINFAHGEFVMLGAyVAYTLATLLGLPLWLALLLAVLVAALLGV--LLERLVIRplrgappLALL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 137 VATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVF---WLLTRKTALGMFIEAVGINIRA 213
Cdd:COG0559 97 LATIGLSLVLQGLVLLIFGADPRSFPALLSGSVELGGVSIPAYRLFIIVVALVLLaalWLFLRRTRLGLAMRAVAQNREA 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507084792 214 AKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTAdIRGADANNAGLWLeLDAILAVVIGG-GSLMGgrfnlllSVVGALII 291
Cdd:COG0559 177 ARLMGINVDRVIALTFALGAALAGLAGVLLAP-IYSVSPTMGFLLG-LKAFAAVVLGGlGSIPG-------AVVGGLLL 246
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
66-291 |
7.07e-16 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 76.32 E-value: 7.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 66 ALLAIGMTLVIATGG-IDLSVGAVMAIAGATTAAMTVAGHSLPVV--LLAALGSGILAGLWNGILVAILK----IQPFVA 138
Cdd:cd06582 9 ALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLalLLALLVAALLGVLLERLVLRPLRgaplLTLLIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 139 TLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVF---WLLTRKTALGMFIEAVGINIRAAK 215
Cdd:cd06582 89 FGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLaalYLFLRRTRLGRAIRAVAQNPEAAR 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507084792 216 NAGVNTRIIVMLTYVLSGLCAAIAGIIVtADIRGADAnNAGLWLELDAILAVVIGG-GSLMGgrfnlllSVVGALII 291
Cdd:cd06582 169 LLGINVRRVFALTFALGAALAGLAGVLL-APITGVSP-TMGLLLLLKAFAAVVLGGlGSIPG-------AVVGGLLL 236
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
82-305 |
3.44e-13 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 68.99 E-value: 3.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 82 DLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATLILMVA---------GRGVAQL 152
Cdd:COG4120 34 DLTVDGSFPLGAAVAAVLIVAGVNPFLATLAAFLAGALAGLVTGLLHTKLKIPPLLAGILTMTAlysinlrimGKPNIPL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 153 ITSGQIVTfNSPELSWFGSGSLLLFPTpVIIALLTLVVFWLLtrKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLS 232
Cdd:COG4120 114 LGEDTIFT-LLPDLGLPGDWAKLLVLL-VIVLVIKLLLDWFL--KTELGLALRATGDNPQMARALGINTDRMKILGLALS 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507084792 233 GLCAAIAGIIVTADIRGADAnNAGLWLELDAiLAVVIGGGSLMGGR---FNLLLSVVGALIIQGMNTGILLSGFPP 305
Cdd:COG4120 190 NGLVALSGALVAQYQGFADV-NMGIGTIVIG-LASVIIGEVLFGSRsilRRLLAVVLGSILYRLIIALALQLGLPP 263
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
56-304 |
1.54e-12 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 67.03 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 56 IDILNRAAPVALLAIGMTLVIATGG-IDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKI 133
Cdd:COG4177 5 LSLLTLILIYAILALGLNLLLGYTGlLSLGHAAFFGIGAYAAAlLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 134 QPF-VATLILMVAGRGVA---QLITSGQIVTFNSPELSWFG---SGSLLLFPTPVIIALLTLVVFWLLTRkTALGMFIEA 206
Cdd:COG4177 85 DYLaIATLAFAEIVRLLAlnlESLTGGADGLSGIPRPTLFGldlGSPLAFYYLVLALLVLVLLLLRRLVR-SRFGRALRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 207 VGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIGG-GSLMGgrfnlllSV 285
Cdd:COG4177 164 IRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLSIEILLMVVLGGlGSLLG-------PV 236
|
250
....*....|....*....
gi 507084792 286 VGALIIQGMNTgiLLSGFP 304
Cdd:COG4177 237 LGAVLLVLLPE--LLRSLP 253
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
42-242 |
5.57e-12 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 65.91 E-value: 5.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 42 YQVILQDGrlFGSPI---DILNRAAPVALLAIGMTLVIATG----GID--LSVGAVMAIAgattAAMTVAGHSLPVVLLA 112
Cdd:COG4603 45 YSALFQGA--FGSPYglgETLVKATPLILTGLAVAVAFRAGlfniGAEgqLYLGALAAAA----VGLALPGLPGPLHLPL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 113 ALGSGILAG-LWnGILVAILKIQP------------FVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSgslLLFPT 179
Cdd:COG4603 119 ALLAGALAGaLW-AAIPGLLKARFgvnevittlmlnYIALYLVNYLVRGPLRDPGSGFPQTPPIPESARLPR---LLPGT 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507084792 180 PV----IIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGII 242
Cdd:COG4603 195 RLhlglLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAV 261
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
62-297 |
1.27e-11 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 63.61 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 62 AAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGH-----SLPVVLLAALGSGILAGLWNGILVAILKIQPF 136
Cdd:cd06580 1 ATPLILAALGVAISFRAGVFNIGLEGQMLLGAFAAALVALYLGlpatgSLPLGLLAAALAGALWALLPALLKAKLGVNEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 137 VATLILMVAGRGVAQLItsgqivtfnspelswfgsgslllfptpVIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKN 216
Cdd:cd06580 81 ISGLMLNYIALGLTSYL---------------------------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARY 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 217 AGVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIgggslmgGRFNLLLSVVGALIIQGMNT 296
Cdd:cd06580 134 AGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEGMSAGYGFIAIAVALL-------GRWNPLGILLAALLFGALEA 206
|
.
gi 507084792 297 G 297
Cdd:cd06580 207 G 207
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
66-309 |
2.85e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 62.85 E-value: 2.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 66 ALLAIGMTLVIATGG-IDLSVGAVMAIAGATTA-AMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPF-VATLIL 142
Cdd:cd06581 5 AILALGLNLLLGYAGqLSLGHAAFFGIGAYTAAlLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 143 MVAGRGVA---QLITSGQIVTFNSPELSWFGSGSLLLFPTPVIIALLTLVVFWLLTR--KTALGMFIEAVGINIRAAKNA 217
Cdd:cd06581 85 AEIVRLLAlnwSSLTGGSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRlvRSPFGRALRAIRENEVAAEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 218 GVNTRIIVMLTYVLSGLCAAIAGIIVTADIRGADANNAGLWLELDAILAVVIGG-GSLMGgrfnlllSVVGALIIQGMNT 296
Cdd:cd06581 165 GINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGlGSLLG-------PVLGAALLVLLPE 237
|
250
....*....|...
gi 507084792 297 giLLSGFPPELNQ 309
Cdd:cd06581 238 --LLRSLGPGLRL 248
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
62-240 |
5.76e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 53.53 E-value: 5.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 62 AAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILAGLWNGILVAILKIQPFVATLI 141
Cdd:COG1079 18 ATPLLLAALGGLFSERAGVLNIGLEGMMLMGAFAGFAVAYLTGSPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507084792 142 LMVAGRGVAQLI---------TSGQIVTFNSPELSWFGS----GSLLLFPTP-VIIALLTLVVFWLLTRKTALGMFIEAV 207
Cdd:COG1079 98 LNLLALGLTAFLgrllfgqggQTPSIPGLPPIPIPGLSDipvlGPLLFGQSPlVYLALLLVPLVWWVLYRTRFGLRLRAV 177
|
170 180 190
....*....|....*....|....*....|...
gi 507084792 208 GINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAG 240
Cdd:COG1079 178 GENPAAADALGINVYRIRYLAVLIGGALAGLGG 210
|
|
| |
