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Conserved domains on  [gi|507083942|ref|WP_016154690|]
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MULTISPECIES: PTS IIA-like nitrogen regulatory protein PtsN [Citrobacter]

Protein Classification

PTS IIA-like nitrogen regulatory protein PtsN( domain architecture ID 10793494)

PTS IIA-like nitrogen regulatory protein PtsN may play a role in regulating nitrogen assimilation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
2-155 3.13e-107

PTS IIA-like nitrogen regulatory protein PtsN;


:

Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 302.44  E-value: 3.13e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   2 TNNDTTLQLSNVLNQECTRAGVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTM 81
Cdd:PRK10896   1 MNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083942  82 RAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITD 155
Cdd:PRK10896  81 RAVGVFVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITE 154
 
Name Accession Description Interval E-value
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
2-155 3.13e-107

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 302.44  E-value: 3.13e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   2 TNNDTTLQLSNVLNQECTRAGVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTM 81
Cdd:PRK10896   1 MNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083942  82 RAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITD 155
Cdd:PRK10896  81 RAVGVFVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITE 154
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 9-155 1.22e-74

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 219.59  E-value: 1.22e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942    9 QLSNVLNQECTRAGVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTmRAVGVFV 88
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELSLPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLK-QPVGVFI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507083942   89 QLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDqELYQIITD 155
Cdd:TIGR01419  80 RLDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAE-EIYQILTD 145
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 9-157 5.74e-50

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 157.32  E-value: 5.74e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   9 QLSNVLNQECTRAGVHCQSKKRALEIISELAAKQ-LSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEeDTMRAVGVF 87
Cdd:COG1762    2 MLSDLLTPELILLDLEASSKEEAIEELAELLAEKgYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPE-GVKKPGIAV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  88 VQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITDTE 157
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELLKEAE 150
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 14-153 3.04e-40

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 132.30  E-value: 3.04e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  14 LNQECTRAGVHCQSKKRALEIISELAAKQlSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTMRAVGVFVQLETP 93
Cdd:cd00211    1 LTKENIRLNLKAKSKEEAIEELAQLLVAA-GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKS-EAVKKPGIAVLRLKEP 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  94 IAFDAIDNQPVDLLFALLVPADQtkTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQII 153
Cdd:cd00211   79 VDFGSLDGQPVHLIFLLAAPDSN--EHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
13-153 9.44e-39

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 128.48  E-value: 9.44e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   13 VLNQECTRAGVHCQSKKRALEIISELAAKQLsLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTmRAVGVFVQLET 92
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADKLVEAG-YVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVK-KPGIAVLTLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083942   93 PIAFDAIDNQPVDLLFALLVPADQtKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQII 153
Cdd:pfam00359  79 PVDFGSEDGKPVKLIFLLAAPDNE-ASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
 
Name Accession Description Interval E-value
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
2-155 3.13e-107

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 302.44  E-value: 3.13e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   2 TNNDTTLQLSNVLNQECTRAGVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTM 81
Cdd:PRK10896   1 MNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083942  82 RAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITD 155
Cdd:PRK10896  81 RAVGVFVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITE 154
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 9-155 1.22e-74

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 219.59  E-value: 1.22e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942    9 QLSNVLNQECTRAGVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTmRAVGVFV 88
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELSLPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLK-QPVGVFI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507083942   89 QLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDqELYQIITD 155
Cdd:TIGR01419  80 RLDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAE-EIYQILTD 145
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 9-157 5.74e-50

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 157.32  E-value: 5.74e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   9 QLSNVLNQECTRAGVHCQSKKRALEIISELAAKQ-LSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEeDTMRAVGVF 87
Cdd:COG1762    2 MLSDLLTPELILLDLEASSKEEAIEELAELLAEKgYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPE-GVKKPGIAV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  88 VQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITDTE 157
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELLKEAE 150
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 14-153 3.04e-40

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 132.30  E-value: 3.04e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  14 LNQECTRAGVHCQSKKRALEIISELAAKQlSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTMRAVGVFVQLETP 93
Cdd:cd00211    1 LTKENIRLNLKAKSKEEAIEELAQLLVAA-GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKS-EAVKKPGIAVLRLKEP 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  94 IAFDAIDNQPVDLLFALLVPADQtkTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQII 153
Cdd:cd00211   79 VDFGSLDGQPVHLIFLLAAPDSN--EHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
13-153 9.44e-39

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 128.48  E-value: 9.44e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   13 VLNQECTRAGVHCQSKKRALEIISELAAKQLsLPSQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTmRAVGVFVQLET 92
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADKLVEAG-YVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVK-KPGIAVLTLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083942   93 PIAFDAIDNQPVDLLFALLVPADQtKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQII 153
Cdd:pfam00359  79 PVDFGSEDGKPVKLIFLLAAPDNE-ASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
fruA TIGR00848
PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family ...
 13-140 1.81e-22

PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273298 [Multi-domain]  Cd Length: 129  Bit Score: 86.56  E-value: 1.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942   13 VLNQECTRAGVHCQSKKRALE-IISELAAKQLSLPSQVVFEAILTREKMGSTGIGNGIAIPHGKleEDTMRAVGV-FVQL 90
Cdd:TIGR00848   1 LLNKDLIFLDQQFTSKEDVIKfLANKLLENGYISDTEEFLEDLLKREEEGTTGIGDGVAIPHAK--SAAVKQPFVaIARL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 507083942   91 ETPIAFDAIDNQPVDLLFALLVPADQT-KTHLHTLSLVAKRLADKTICRRL 140
Cdd:TIGR00848  79 VKGVDWQSLDGKPVKLIFLIAVPKDEAgNTHLKALSQLARLLLNDEFRAKL 129
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 27-163 4.26e-19

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 82.86  E-value: 4.26e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  27 SKKRALEIISELAAKQLSLPSQVVF-EAILTREKMGSTGIGNGIAIPHGKLEEDTMRAVGVfVQLETPIAFDAID-NQPV 104
Cdd:PRK09765  20 SREEAIHALAQRLAALGKISSTEQFlEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAV-ATLSEPLQWEGVDgPEAV 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942 105 DLLFALLVPADQT-KTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIITDTEGGLDEA 163
Cdd:PRK09765  99 DLIFLLAIPPNEAgTTHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSA 158
PRK09913 PRK09913
PTS fructose transporter subunit IIA;
31-156 5.81e-17

PTS fructose transporter subunit IIA;


Pssm-ID: 182141 [Multi-domain]  Cd Length: 148  Bit Score: 73.00  E-value: 5.81e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  31 ALEIISELAAKQLSL----PSQVVFEAILTREKMGSTGIGNGIAIPHGKlEEDTMRAVGVFVQLETPIAFDAIDNQPVDL 106
Cdd:PRK09913  18 AYSILKQLATIALQNgfitDSHQFLQTLLLREKMHSTGFGSGVAVPHGK-SACVKQPFVLFARKAQAIDWQASDGEDVNC 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 507083942 107 LFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDqELYQIITDT 156
Cdd:PRK09913  97 WICLGVPQSGEEDQVKIIGTLCRKIIHQDFIHQLKQGDTD-QVLALLNQT 145
MtlA2 COG4668
Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and ...
 13-154 6.29e-17

Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism];


Pssm-ID: 443705 [Multi-domain]  Cd Length: 143  Bit Score: 72.50  E-value: 6.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  13 VLNQECTRAGVHCQSKKRALEIISE-LAAKQLSLPSQVvfEAILTREKMGSTGIGNGIAIPHGklEEDTMRAV---GV-F 87
Cdd:COG4668    3 ILTKENIRLNASAANKEEAIRLAGQlLVEAGYVEPEYI--DAMLEREAQVSTYLGNGIAIPHG--TNEAKDLVlktGIsV 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507083942  88 VQLETPIAFDaiDNQPVDLLFALlvpADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQIIT 154
Cdd:COG4668   79 LQFPDGVDWG--DGNTVYLVIGI---AAKSDEHLEILRQLARVLSDEENVEKLAKATDAEEILALLT 140
PRK10372 PRK10372
PTS ascorbate transporter subunit IIA;
65-156 1.02e-09

PTS ascorbate transporter subunit IIA;


Pssm-ID: 182417 [Multi-domain]  Cd Length: 154  Bit Score: 54.21  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  65 IGNGIAIPHGKLEEDTMRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVaKRLADKTICRRLRAAQ 144
Cdd:PRK10372  60 IAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDILITMAAVDANTHQEVGIMQIV-NLFEDEANFDRLRACR 138

                         90
                 ....*....|..
gi 507083942 145 SDQELYQIITDT 156
Cdd:PRK10372 139 TEQEVLDLIDRT 150
PRK11109 PRK11109
fused PTS fructose transporter subunit IIA/HPr protein;
52-154 5.20e-06

fused PTS fructose transporter subunit IIA/HPr protein;


Pssm-ID: 236849 [Multi-domain]  Cd Length: 375  Bit Score: 44.94  E-value: 5.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  52 EAILTREKMGSTGIGNGIAIPHGKLE-EDTMRAVGVFV-QLETPIAFDaiDNQPVDLLFALLVPADQtktHLHTLSLVAK 129
Cdd:PRK11109  41 DGMLAREQQTSTFLGNGIAIPHGTTDtRDLVLKTGVQVfQFPQGVTWG--DGQTAYVAIGIAAKSDE---HLGLLRQLTH 115

                         90       100
                 ....*....|....*....|....*
gi 507083942 130 RLADKTICRRLRAAQSDQELYQIIT 154
Cdd:PRK11109 116 VLSDDSVAEQLKSATTAEELRALLM 140
PRK15083 PRK15083
PTS system mannitol-specific transporter subunit IICBA; Provisional
 22-153 1.19e-05

PTS system mannitol-specific transporter subunit IICBA; Provisional


Pssm-ID: 237905 [Multi-domain]  Cd Length: 639  Bit Score: 44.27  E-value: 1.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083942  22 GVHCQSKKRALEIISE-LAAKQLSLPSQVvfEAILTREKMGSTGIGNGIAIPHGKLE-EDTMRAVG-VFVQLETPIAF-D 97
Cdd:PRK15083 505 GLKAATKEEAIRFAGEqLVKGGYVEPEYV--DAMLDREKLTSTYLGESIAVPHGTVEaKDRVLKTGvVFCQYPEGVRFgE 582

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 507083942  98 AIDNqpvdllFALLV--PADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDQELYQII 153
Cdd:PRK15083 583 EEDD------IARLVigIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELL 634
PRK13779 PRK13779
bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional
 37-81 1.87e-04

bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional


Pssm-ID: 237502 [Multi-domain]  Cd Length: 503  Bit Score: 40.63  E-value: 1.87e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 507083942  37 ELAAKQLSLPSQV---VFEAILTREKMGSTGIGNGIAIPHGKLEEDTM 81
Cdd:PRK13779  23 EMAAAALEQAGNVengYLQGMLARELQTSTFLGNGIAIPHGTLDTRHM 70
PRK09863 PRK09863
putative frv operon regulatory protein; Provisional
 53-116 5.78e-03

putative frv operon regulatory protein; Provisional


Pssm-ID: 182121 [Multi-domain]  Cd Length: 584  Bit Score: 36.37  E-value: 5.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083942  53 AILTREKMGSTGIGNGIAIPHGKLEEDTmRAVGVFVQLETPIafdAIDNQPVDLLFALLVPADQ 116
Cdd:PRK09863 489 RIIAREGAGNQLILNHLSIPHCWTEQER-RYRGFAITLAQPI---EVNNEVIYLVLIVLAAADA 548
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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