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Conserved domains on  [gi|507083437|ref|WP_016154185|]
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MULTISPECIES: formate hydrogenlyase subunit HycF [Citrobacter]

Protein Classification

formate hydrogenlyase complex iron-sulfur subunit( domain architecture ID 11485882)

formate hydrogenlyase complex iron-sulfur subunit is a 4Fe-4S dicluster domain-containing protein that may function as an electron transfer protein for the hydrogenase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 1-180 5.39e-120

formate hydrogenlyase complex iron-sulfur subunit; Provisional


:

Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 336.62  E-value: 5.39e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   1 MFTFIKKVIKTGAPTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHELAWQFNLGRCIFCAR 80
Cdd:PRK12387   1 MFKLIKKVIKTGTATSSYPLEPIAVDKNFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  81 CEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPDCKR 160
Cdd:PRK12387  81 CEEVCPTAAIKLSQEFELAVWKKEDLLQQSEFALCNCRVCGRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR 160

                        170       180
                 ....*....|....*....|
gi 507083437 161 QKCLVPSDRIELTRHMKEAS 180
Cdd:PRK12387 161 QKCLVPSDRIELTRHMKEAI 180
 
Name Accession Description Interval E-value
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 1-180 5.39e-120

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 336.62  E-value: 5.39e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   1 MFTFIKKVIKTGAPTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHELAWQFNLGRCIFCAR 80
Cdd:PRK12387   1 MFKLIKKVIKTGTATSSYPLEPIAVDKNFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  81 CEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPDCKR 160
Cdd:PRK12387  81 CEEVCPTAAIKLSQEFELAVWKKEDLLQQSEFALCNCRVCGRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR 160

                        170       180
                 ....*....|....*....|
gi 507083437 161 QKCLVPSDRIELTRHMKEAS 180
Cdd:PRK12387 161 QKCLVPSDRIELTRHMKEAI 180
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 33-173 2.88e-20

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 81.67  E-value: 2.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  33 PEHNPQQCIGCAACVNACPSNALTVETDLVThELAWQFNLGRCIFCARCEEVCPTAAIKLSQEY-ELAVWKKEDFLQQSR 111
Cdd:cd10549    1 LKYDPEKCIGCGICVKACPTDAIELGPNGAI-ARGPEIDEDKCVFCGACVEVCPTGAIELTPEGkEYVPKEKEAEIDEEK 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083437 112 faLCNCRVCNRPFAVQkeidyAIALlkhngdSRAENHRESFETCPDCKR--QKClvPSDRIELT 173
Cdd:cd10549   80 --CIGCGLCVKVCPVD-----AITL------EDELEIVIDKEKCIGCGIcaEVC--PVNAIKLV 128
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 14-106 9.11e-20

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 80.15  E-value: 9.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   14 PTSSYPLEPIAVDKNFRG-----KPEHNPQQCIGCAACVNACPSNALTVET----DLVTHELAWQFNLGRCIFCARCEEV 84
Cdd:TIGR01971  14 VTVQYPEEKLYLPPRFRGrivltRDPNGEEKCIGCTLCAAVCPADAIRVVPaegeDGKRRLKFYEINFGRCIFCGLCEEA 93

                          90       100
                  ....*....|....*....|..
gi 507083437   85 CPTAAIKLSQEYELAVWKKEDF 106
Cdd:TIGR01971  94 CPTDAIVLTPEFELATYTRSDL 115
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 37-105 1.78e-16

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 69.77  E-value: 1.78e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507083437  37 PQQCIGCAACVNACPSNALTVETDlvTHELAWQFNLGRCIFCARCEEVCPTAAIKLSQeYELAVWKKED 105
Cdd:COG1143    1 EDKCIGCGLCVRVCPVDAITIEDG--EPGKVYVIDPDKCIGCGLCVEVCPTGAISMTP-FELAVEDREE 66
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 40-89 1.26e-09

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 51.76  E-value: 1.26e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 507083437   40 CIGCAACVNACPSNALTV-ETDLVTHELAWQFNLGRCIFCARCEEVCPTAA 89
Cdd:pfam12838   1 CIGCGACVAACPVGAITLdEVGEKKGTKTVVIDPERCVGCGACVAVCPTGA 51
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 40-90 3.34e-05

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 42.92  E-value: 3.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 507083437  40 CIGCAACVNACPSNALTVETDlvthELAWQfnlGRCIFCARCEEVCPTAAI 90
Cdd:NF038196 187 CIGCGICAKVCPVNNIEMEDG----KPVWG---HNCTHCLACIHRCPKEAI 230
 
Name Accession Description Interval E-value
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 1-180 5.39e-120

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 336.62  E-value: 5.39e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   1 MFTFIKKVIKTGAPTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHELAWQFNLGRCIFCAR 80
Cdd:PRK12387   1 MFKLIKKVIKTGTATSSYPLEPIAVDKNFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  81 CEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPDCKR 160
Cdd:PRK12387  81 CEEVCPTAAIKLSQEFELAVWKKEDLLQQSEFALCNCRVCGRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR 160

                        170       180
                 ....*....|....*....|
gi 507083437 161 QKCLVPSDRIELTRHMKEAS 180
Cdd:PRK12387 161 QKCLVPSDRIELTRHMKEAI 180
PRK08222 PRK08222
hydrogenase 4 subunit H; Validated
 1-180 8.15e-68

hydrogenase 4 subunit H; Validated


Pssm-ID: 181301 [Multi-domain]  Cd Length: 181  Bit Score: 204.60  E-value: 8.15e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   1 MFTFIKKVIKTGAPTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHELAWQFNLGRCIFCAR 80
Cdd:PRK08222   1 MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  81 CEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKH--NGDSRAENHRESFETCPDC 158
Cdd:PRK08222  81 CEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQqqNAPQNREMLRAQASVCPEC 160

                        170       180
                 ....*....|....*....|..
gi 507083437 159 KRQKCLVpSDRIELTRHMKEAS 180
Cdd:PRK08222 161 KQRATLI-NDDTDVPLVAKEQL 181
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 33-173 2.88e-20

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 81.67  E-value: 2.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  33 PEHNPQQCIGCAACVNACPSNALTVETDLVThELAWQFNLGRCIFCARCEEVCPTAAIKLSQEY-ELAVWKKEDFLQQSR 111
Cdd:cd10549    1 LKYDPEKCIGCGICVKACPTDAIELGPNGAI-ARGPEIDEDKCVFCGACVEVCPTGAIELTPEGkEYVPKEKEAEIDEEK 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083437 112 faLCNCRVCNRPFAVQkeidyAIALlkhngdSRAENHRESFETCPDCKR--QKClvPSDRIELT 173
Cdd:cd10549   80 --CIGCGLCVKVCPVD-----AITL------EDELEIVIDKEKCIGCGIcaEVC--PVNAIKLV 128
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
3-107 3.13e-20

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 82.24  E-value: 3.13e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   3 TFIKKVIktgapTSSYPLEPIAVDKNFRG-----KPEHNPQQCIGCAACVNACPSNALTVETDLVT----HELAWQFNLG 73
Cdd:PRK05888  23 YFFKKKV-----TIQYPEEKLPLSPRFRGrhalrRDPNGEERCIACKLCAAICPADAITIEAAEREdgrrRTTRYDINFG 97

                         90       100       110
                 ....*....|....*....|....*....|....
gi 507083437  74 RCIFCARCEEVCPTAAIKLSQEYELAVWKKEDFL 107
Cdd:PRK05888  98 RCIFCGFCEEACPTDAIVETPDFELATETREELI 131
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 14-106 9.11e-20

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 80.15  E-value: 9.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   14 PTSSYPLEPIAVDKNFRG-----KPEHNPQQCIGCAACVNACPSNALTVET----DLVTHELAWQFNLGRCIFCARCEEV 84
Cdd:TIGR01971  14 VTVQYPEEKLYLPPRFRGrivltRDPNGEEKCIGCTLCAAVCPADAIRVVPaegeDGKRRLKFYEINFGRCIFCGLCEEA 93

                          90       100
                  ....*....|....*....|..
gi 507083437   85 CPTAAIKLSQEYELAVWKKEDF 106
Cdd:TIGR01971  94 CPTDAIVLTPEFELATYTRSDL 115
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 3-105 1.30e-16

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 71.79  E-value: 1.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   3 TFIKKVIKTGApTSSYP-LEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHELaWqfnLGRCIFCARC 81
Cdd:PRK08348   7 TVLRNLFKKPA-TNLFPaTEPVPVPEDFRGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVAL-W---TGRCVFCGQC 81

                         90       100
                 ....*....|....*....|....
gi 507083437  82 EEVCPTAAIKLSQEYELAVWKKED 105
Cdd:PRK08348  82 VDVCPTGALQMSDDFLLASYDRFD 105
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 37-105 1.78e-16

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 69.77  E-value: 1.78e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507083437  37 PQQCIGCAACVNACPSNALTVETDlvTHELAWQFNLGRCIFCARCEEVCPTAAIKLSQeYELAVWKKED 105
Cdd:COG1143    1 EDKCIGCGLCVRVCPVDAITIEDG--EPGKVYVIDPDKCIGCGLCVEVCPTGAISMTP-FELAVEDREE 66
ndhI CHL00014
NADH dehydrogenase subunit I
 15-101 7.58e-14

NADH dehydrogenase subunit I


Pssm-ID: 214334 [Multi-domain]  Cd Length: 167  Bit Score: 65.55  E-value: 7.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  15 TSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTV----ETDLVTHEL-AWQFNLGRCIFCARCEEVCPTAA 89
Cdd:CHL00014  36 TIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVdwklETDIRKKRLlNYSIDFGVCIFCGNCVEYCPTNC 115

                         90
                 ....*....|..
gi 507083437  90 IKLSQEYELAVW 101
Cdd:CHL00014 116 LSMTEEYELSTY 127
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
31-103 3.27e-12

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 58.97  E-value: 3.27e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  31 GKPEHNPQQCIGCAACVNACPSNALTVETDlvthelAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKK 103
Cdd:COG2768    4 GKPYVDEEKCIGCGACVKVCPVGAISIEDG------KAVIDPEKCIGCGACIEVCPVGAIKIEWEEDEEFQEK 70
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 32-94 2.03e-11

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 56.60  E-value: 2.03e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVETDLVThelawqFNLGRCIFCARCEEVCPTAAIKLSQ 94
Cdd:COG2221    9 PPKIDEEKCIGCGLCVAVCPTGAISLDDGKLV------IDEEKCIGCGACIRVCPTGAIKGEK 65
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 36-100 1.09e-09

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 52.02  E-value: 1.09e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 507083437  36 NPQQCIGCAACVNACPSNALTVETDLVTHELAwqfNLGRCIFCARCEEVCPTAAIKLSQEYELAV 100
Cdd:COG1146    6 DTDKCIGCGACVEVCPVDVLELDEEGKKALVI---NPEECIGCGACELVCPVGAITVEDDEPEEQ 67
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 40-89 1.26e-09

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 51.76  E-value: 1.26e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 507083437   40 CIGCAACVNACPSNALTV-ETDLVTHELAWQFNLGRCIFCARCEEVCPTAA 89
Cdd:pfam12838   1 CIGCGACVAACPVGAITLdEVGEKKGTKTVVIDPERCVGCGACVAVCPTGA 51
PRK13984 PRK13984
putative oxidoreductase; Provisional
 29-107 2.05e-09

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 55.54  E-value: 2.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  29 FRGKPEHNPQQCIGCAACVNACPSNALT-VETDLVTHELAWQ-----FNLGRCIFCARCEEVCPTAAIKLSQEYELAVWK 102
Cdd:PRK13984  36 YRGFHINDWEKCIGCGTCSKICPTDAITmVEVPDLPQEYGKKpqrpvIDYGRCSFCALCVDICTTGSLKMTREYIHISPD 115


                 ....*
gi 507083437 103 KEDFL 107
Cdd:PRK13984 116 PEDFI 120
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 30-92 2.32e-09

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 51.27  E-value: 2.32e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  30 RGKPEHNPQQCIGCAACVNACPSNALTVETDlvtheLAWQFNLGRCIFCARCEEVCPTAAIKL 92
Cdd:COG1149    3 RKIPVIDEEKCIGCGLCVEVCPEGAIKLDDG-----GAPVVDPDLCTGCGACVGVCPTGAITL 60
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 32-97 4.94e-09

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 50.82  E-value: 4.94e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVETDLVThelawQFNLGRCIFCARCEEVCPTAAIKLSQEYE 97
Cdd:COG1144   24 RPVVDEDKCIGCGLCWIVCPDGAIRVDDGKYY-----GIDYDYCKGCGICAEVCPVKAIEMVPEEK 84
NapF COG1145
Ferredoxin [Energy production and conversion];
32-92 9.93e-09

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 53.19  E-value: 9.93e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVETDLVTHelawQFNLGRCIFCARCEEVCPTAAIKL 92
Cdd:COG1145  176 KAVIDAEKCIGCGLCVKVCPTGAIRLKDGKPQI----VVDPDKCIGCGACVKVCPVGAISL 232
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
30-100 1.49e-08

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 50.81  E-value: 1.49e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  30 RGKPEHNPQQCIGC--AACVNACPSNALTVETDLVthelawQFNLGRCIFCARCEEVCPTAAIKLSQEYELAV 100
Cdd:COG1142   42 RKAGVSAPVQCRHCedAPCAEVCPVGAITRDDGAV------VVDEEKCIGCGLCVLACPFGAITMVGEKSRAV 108
PRK13795 PRK13795
hypothetical protein; Provisional
 40-91 7.03e-08

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 51.15  E-value: 7.03e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 507083437  40 CIGCAACVNACPSNALTVETDLVTHELAWqfnlGRCIFCARCEEVCPTAAIK 91
Cdd:PRK13795 583 CVGCGVCVGACPTGAIRIEEGKRKISVDE----EKCIHCGKCTEVCPVVKYK 630
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 33-104 7.62e-08

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 50.91  E-value: 7.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  33 PEHNPQQCIGCAACVNACPSNaltvetdLVTHELAW-----------QFNLGRCIFCARCEEVCPtAAIKLSQEYELAvw 101
Cdd:COG4656  359 PPPEEQPCIRCGRCVDACPMG-------LLPQQLYWyaragdfdkaeEYNLMDCIECGCCSYVCP-SKIPLVQYIRLA-- 428


                 ...
gi 507083437 102 KKE 104
Cdd:COG4656  429 KAE 431
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 36-95 1.35e-07

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 46.96  E-value: 1.35e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  36 NPQQCIGCAACVNACPSNALTVETDLVthelawQFNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:COG4231   20 DEDKCTGCGACVKVCPADAIEEGDGKA------VIDPDLCIGCGSCVQVCPVDAIKLEKR 73
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
32-93 1.95e-07

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 49.29  E-value: 1.95e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 507083437  32 KPEHNPQQCIGCAACVNACPsnaltveTDLVTHELawQFNLGRCIFCARCEEVCPTAAIKLS 93
Cdd:COG0348  204 RVRYDRGDCIDCGLCVKVCP-------MGIDIRKG--EINQSECINCGRCIDACPKDAIRFS 256
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 33-99 3.19e-07

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 49.26  E-value: 3.19e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083437   33 PEHNPQQCIGCAACVNACPSNALTVETDLVT----HELAWQFNLGRCIFCARCEEVCPtAAIKLSQEYELA 99
Cdd:TIGR01945 358 PESPEKPCIRCGKCVQVCPMNLLPQQLNWLAladeFDEAEEHNLMDCIECGCCSYVCP-SNIPLVQYIRQA 427
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
33-92 5.79e-07

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 48.32  E-value: 5.79e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  33 PEHNPQQCIGCAACVNACPSNALTVETDLVThelawQFNLGRCIFCARCEEVCPTAAIKL 92
Cdd:COG1148  491 AEVDPEKCTGCGRCVEVCPYGAISIDEKGVA-----EVNPALCKGCGTCAAACPSGAISL 545
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 39-95 6.07e-07

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 48.33  E-value: 6.07e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 507083437  39 QCIGCAACVNACPSNALTVetdlVTHELAWQFNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:PRK12771 511 NCFECDNCYGACPQDAIIK----LGPGRRYHFDYDKCTGCHICADVCPCGAIEMGPG 563
Rama_corrin_act TIGR04270
methylamine methyltransferase corrinoid protein reductive activase; Members of this family ...
 40-94 6.28e-07

methylamine methyltransferase corrinoid protein reductive activase; Members of this family occur as paralogs in species capable of generating methane from mono-, di-, and tri-methylamine. Members include RamA (Reductive Activation of Methyltransfer, Amines) from Methanosarcina barkeri MS (DSM 800). Member proteins have two C-terminal motifs with four Cys each, likely to bind one 4Fe-4S cluster per motif.


Pssm-ID: 211993 [Multi-domain]  Cd Length: 535  Bit Score: 48.22  E-value: 6.28e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437   40 CIGCAACVNACPSNALTV-ETDLVThelawqFNLGRCI--FCARCEEVCPTAAIKLSQ 94
Cdd:TIGR04270 481 CIACQKCVKECPGKALSIlESEPPR------IDTDRCLgtACRRCERVCPEKVFDIRN 532
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
40-90 9.26e-07

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 47.62  E-value: 9.26e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 507083437  40 CIGCAACVNACPSNALTVETDL--VTHELawqfnlgrCIFCARCEEVCPTAAI 90
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLavIDQEK--------CTSCGKCVEKCPTKAI 259
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
22-91 1.05e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 47.71  E-value: 1.05e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  22 PIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVThelawqFNLGRCIFCARCEEVCPTAAIK 91
Cdd:COG4624   75 GIIIIDKRGPSIIRDKEKCKNCYPCVRACPVKAIKVDDGKAE------IDEEKCISCGQCVAVCPFGAIT 138
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 32-86 1.25e-06

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 43.78  E-value: 1.25e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437   32 KPEHNPQQCIGCAACVNACPSNALTV-ETDLVTHELAWQFNLGRCIFCARCEEVCP 86
Cdd:pfam13237   1 KVVIDPDKCIGCGRCTAACPAGLTRVgAIVERLEGEAVRIGVWKCIGCGACVEACP 56
Fer4_9 pfam13187
4Fe-4S dicluster domain;
39-90 1.90e-06

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 43.31  E-value: 1.90e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 507083437   39 QCIGCAACVNACPSNALTVETDLVTHELAWQFNlgRCIFCARCEEVCPTAAI 90
Cdd:pfam13187   1 KCTGCGACVAACPAGAIVPDLVGQTIRGDIAGL--ACIGCGACVDACPRGAI 50
PRK06273 PRK06273
ferredoxin; Provisional
 40-86 3.31e-06

ferredoxin; Provisional


Pssm-ID: 235764 [Multi-domain]  Cd Length: 165  Bit Score: 45.09  E-value: 3.31e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 507083437  40 CIGCAACVNACPSNALTVE-------TDLVTHELAWQFNLGRCIFCARCEEVCP 86
Cdd:PRK06273  51 CIGCGGCANVCPTKAIEMIpvepvkiTEGYVKTKIPKIDYEKCVYCLYCHDFCP 104
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 36-92 3.51e-06

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 46.17  E-value: 3.51e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 507083437  36 NPQQCIGC--AACVNACPSNALTVETDLVthelawQFNLGRCIFCARCEEVCPTAAIKL 92
Cdd:PRK12809  52 NPVACHHCnnAPCVTACPVNALTFQSDSV------QLDEQKCIGCKRCAIACPFGVVEM 104
PRK09898 PRK09898
ferredoxin-like protein;
38-92 4.66e-06

ferredoxin-like protein;


Pssm-ID: 182135 [Multi-domain]  Cd Length: 208  Bit Score: 45.21  E-value: 4.66e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 507083437  38 QQCIGCAACVNACPSNALTVETDLVTHelawqfnlGRCIFCARCEEVCPTAAIKL 92
Cdd:PRK09898 154 KRCIGCSACTTACPWMMATVNTESKKS--------SKCVLCGECANACPTGALKI 200
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 36-111 7.88e-06

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 45.12  E-value: 7.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  36 NPQQCIGCAACVNACPSNALTVETDLVTHELAwQFNLGRCIFCA------RCEEVCPTAAIKLSQEYELAVWKKEDFLQQ 109
Cdd:PRK12769  83 NQQKCIGCKSCVVACPFGTMQIVLTPVAAGKV-KATAHKCDLCAgrengpACVENCPADALQLVTEQALSGMAKSRRLRT 161


                 ..
gi 507083437 110 SR 111
Cdd:PRK12769 162 AR 163
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 40-91 8.06e-06

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 43.78  E-value: 8.06e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  40 CIGCAACVNACPSNAL---TVETDLvthELAWQ----FNLGRCIFCA-RCEEVCPTAAIK 91
Cdd:cd16373   16 CIRCGLCVEACPTGVIqpaGLEDGL---EGGRTpyldPREGPCDLCCdACVEVCPTGALR 72
SdhB/FrdB COG0479
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and ...
 39-90 2.32e-05

Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440247 [Multi-domain]  Cd Length: 230  Bit Score: 43.20  E-value: 2.32e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437  39 QCIGCAACVNACPS-------------------NALT--VETDLVTHELAWQFNLGRCIFCARCEEVCP-----TAAI 90
Cdd:COG0479  143 ECILCGACVAACPNvwanpdflgpaalaqayrfALDPrdEETEERLEALEDEEGVWRCTTCGNCTEVCPkgippTKAI 220
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
31-92 2.50e-05

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 41.95  E-value: 2.50e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437  31 GKPEHNPQQCIGCAACVNACPSNALTVETDLVTHElawqfnLGRCIFCA------RCEEVCPTAAIKL 92
Cdd:COG1142   74 GAVVVDEEKCIGCGLCVLACPFGAITMVGEKSRAV------AVKCDLCGgreggpACVEACPTGALRL 135
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 38-95 2.55e-05

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 42.23  E-value: 2.55e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437  38 QQCIGCAACVNACPSNALTVetdLVTHELAWQFNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:cd10564   13 DLCTRCGDCVEACPEGIIVR---GDGGFPELDFSRGECTFCGACAEACPEGALDPARE 67
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 37-100 3.19e-05

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 41.61  E-value: 3.19e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  37 PQQCIGC--AACVNACPSNALTVETDLVTHelawqFNLGRCIFCARCEEVCPTAAIKLSQEYELAV 100
Cdd:cd04410   47 PVSCMHCedPPCVKACPTGAIYKDEDGIVL-----IDEDKCIGCGSCVEACPYGAIVFDPEPGKAV 107
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 33-113 3.27e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 43.40  E-value: 3.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  33 PEHNPQQ-CIGCAACVNACPSnaltvetDLVTHELAW-----------QFNLGRCIFCARCEEVCPtAAIKLSQEYELA- 99
Cdd:PRK05035 364 PPPPPEQpCIRCGACADACPA-------SLLPQQLYWfakaeehdkaqEYNLFDCIECGACAYVCP-SNIPLVQYYRQAk 435

                         90
                 ....*....|....*.
gi 507083437 100 --VWKKEDFLQQSRFA 113
Cdd:PRK05035 436 aeIRAIEQEKKKAEEA 451
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 40-90 3.34e-05

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 42.92  E-value: 3.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 507083437  40 CIGCAACVNACPSNALTVETDlvthELAWQfnlGRCIFCARCEEVCPTAAI 90
Cdd:NF038196 187 CIGCGICAKVCPVNNIEMEDG----KPVWG---HNCTHCLACIHRCPKEAI 230
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 40-135 3.68e-05

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 42.67  E-value: 3.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  40 CIGCAACVNACPSNALTVETDLVTHELAwqfnlGRCIFCARCEEVCPTAAIKL---SQEYELAVWKKEDFLQQSRFALCN 116
Cdd:COG2878  139 CIGCGDCIKACPFDAIVGAAKGMHTVDE-----DKCTGCGLCVEACPVDCIEMvpvSPTVVVSSWDKGKAVRKVVGCIGL 213

                         90
                 ....*....|....*....
gi 507083437 117 CRVCNRPFAVQKEIDYAIA 135
Cdd:COG2878  214 CCKKCCPAAAITVNNLAAI 232
napF TIGR00402
ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of ...
 14-90 4.44e-05

ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation. [Energy metabolism, Electron transport]


Pssm-ID: 273060 [Multi-domain]  Cd Length: 101  Bit Score: 40.70  E-value: 4.44e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 507083437   14 PTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALtVETDLVTHELawQFNLGRCIFCARCEEVCPTAAI 90
Cdd:TIGR00402  10 PATSSTIEKTQIRPPWSARESLFSAVCTRCGECASACENNIL-QLGQQGQPTV--EFDNAECDFCGKCAEACPTNAF 83
PsrB cd10551
polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial ...
 35-90 5.30e-05

polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.


Pssm-ID: 319873 [Multi-domain]  Cd Length: 185  Bit Score: 41.75  E-value: 5.30e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507083437  35 HNPQQCIGCAACVNACPSNALTV-ETDLVTHELAWQFNLGR---CIFCA---------RCEEVCPTAAI 90
Cdd:cd10551   80 VDYDKCIGCRYCMAACPYGARYFnPEEPHEFGEVPVRPKGVvekCTFCYhrldegllpACVEACPTGAR 148
ACS_1 cd01916
Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and ...
 39-87 5.60e-05

Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.


Pssm-ID: 238897 [Multi-domain]  Cd Length: 731  Bit Score: 42.78  E-value: 5.60e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  39 QCIGCAACVNACPsNALTVETDLvthELAWQFNLG-------RCIFCARCEEVCPT 87
Cdd:cd01916  366 KCTDCGWCTRACP-NSLRIKEAM---EAAKEGDFSgladlfdQCVGCGRCEQECPK 417
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 40-93 5.67e-05

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 42.18  E-value: 5.67e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 507083437  40 CIGCAACVNACPSNALTVETDLVTHElawqfNLGRCIFCARCEEVCPTAAIKLS 93
Cdd:PRK00783 171 CDECEKCVEACPRGVLELKEGKLVVT-----DLLNCSLCKLCERACPGKAIRVS 219
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 24-92 6.91e-05

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 40.78  E-value: 6.91e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507083437  24 AVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHElawqfnlgRCIFCARCEEVCPTAAIKL 92
Cdd:cd16372   63 AITRDANGVVMINKKLCVGCLMCVGFCPEGAMFKHEDYPEPF--------KCIACGICVKACPTGALEL 123
HycB_like cd10554
HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a ...
 37-100 1.85e-04

HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.


Pssm-ID: 319876 [Multi-domain]  Cd Length: 149  Bit Score: 39.94  E-value: 1.85e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  37 PQQCIGC--AACVNACPSNALTVETDLVthelawQFNLGRCIFCARCEEVCPTAAIKLSQEYELAV 100
Cdd:cd10554   53 PVQCRQCedAPCANVCPVGAISQEDGVV------QVDEERCIGCKLCVLACPFGAIEMAPTTVPGV 112
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 23-58 1.92e-04

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 38.17  E-value: 1.92e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 507083437  23 IAVDKNfrGKPEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:COG1149   28 IKLDDG--GAPVVDPDLCTGCGACVGVCPTGAITLE 61
HybA COG0437
Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and ...
 35-91 2.03e-04

Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and conversion];


Pssm-ID: 440206 [Multi-domain]  Cd Length: 184  Bit Score: 39.93  E-value: 2.03e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083437  35 HNPQQCIGCAACVNACPSNALtvetdlvthelawQFNLGR-----CIFCA---------RCEEVCPTAAIK 91
Cdd:COG0437   87 VDYDKCIGCRYCVAACPYGAP-------------RFNPETgvvekCTFCAdrldegllpACVEACPTGALV 144
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 31-90 2.07e-04

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 39.53  E-value: 2.07e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  31 GKPEHNPQQ--CIGCAACVNACPSNALTVETDL--------VTHELAWQFnlgrcIFCARCEEVCPTAAI 90
Cdd:cd10564   36 GFPELDFSRgeCTFCGACAEACPEGALDPAREApwplraeiGDSCLALQG-----VECRSCQDACPTQAI 100
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 34-92 2.28e-04

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 39.29  E-value: 2.28e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437  34 EHNPQQCIGCAACVNACPSNALTVETDLVTHElawqfnlgRCIFCA---------RCEEVCPTAAIKL 92
Cdd:cd04410   76 LIDEDKCIGCGSCVEACPYGAIVFDPEPGKAV--------KCDLCGdrldeglepACVKACPTGALTF 135
PRK12576 PRK12576
succinate dehydrogenase/fumarate reductase iron-sulfur subunit;
26-86 2.63e-04

succinate dehydrogenase/fumarate reductase iron-sulfur subunit;


Pssm-ID: 237143 [Multi-domain]  Cd Length: 279  Bit Score: 40.12  E-value: 2.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  26 DKNFRGKPEHNPQ-----QCIGCAACVNACPS------------------------NALTVETDLVTHELAWqfnlgRCI 76
Cdd:PRK12576 135 KAEHRLKPEDQKElwkfaQCIWCGLCVSACPVvaidpeflgpaahakgyrfladprDTITEERMKILIDSSW-----RCT 209

                         90
                 ....*....|
gi 507083437  77 FCARCEEVCP 86
Cdd:PRK12576 210 YCYSCSNVCP 219
PRK14028 PRK14028
pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
 6-95 2.95e-04

pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional


Pssm-ID: 172522 [Multi-domain]  Cd Length: 312  Bit Score: 40.37  E-value: 2.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437   6 KKVIKTGA--PTSSYPLepiaVDKNFR-GKPEHNPQQCIGCAACVNACPSNALtVEtdlvthelAWQ------------- 69
Cdd:PRK14028 216 QEVNKAGAvfPGSSFPY----LTGGWRiDKPVIDHSKCIMCRKCWLYCPDDAI-IE--------AWReaegprgrkfrmk 282

                         90       100
                 ....*....|....*....|....*....
gi 507083437  70 ---FNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:PRK14028 283 midFDYQYCKGCGVCAEVCPTGAIQMVRE 311
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 37-92 3.31e-04

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 39.40  E-value: 3.31e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437   37 PQQCIGCAACVNACPSNALtVETDLVTHELAWQFnlgrCIFCARCEEVCPTAAIKL 92
Cdd:TIGR01944 112 EDNCIGCTKCIQACPVDAI-VGAAKAMHTVIADE----CTGCDLCVEPCPTDCIEM 162
QueG COG1600
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ...
 34-86 3.53e-04

Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441208 [Multi-domain]  Cd Length: 345  Bit Score: 40.19  E-value: 3.53e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  34 EHNPQQCIGCAACVNACPSNA---------------LTVET-DLVTHELAWqfNLGRCIF-CARCEEVCP 86
Cdd:COG1600  180 EPVEDHCGSCTRCLDACPTGAivapyvldarrcisyLTIELkGPIPEELRP--KMGNRIYgCDDCQDVCP 247
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 43-98 4.01e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 38.78  E-value: 4.01e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 507083437  43 CAACVNACPSNALTVETDLVTHE---LAwQFNLGRCI------FCARCEEVCPTAAIKLSQEYEL 98
Cdd:cd16373   59 CDACVEVCPTGALRPLDLEEQKVkmgVA-VIDKDRCLawqggtDCGVCVEACPTEAIAIVLEDDV 122
psaC CHL00065
photosystem I subunit VII
 40-87 4.30e-04

photosystem I subunit VII


Pssm-ID: 177005 [Multi-domain]  Cd Length: 81  Bit Score: 37.43  E-value: 4.30e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 507083437  40 CIGCAACVNACPSNAL-TVETD-LVTHELAWQFNLGRCIFCARCEEVCPT 87
Cdd:CHL00065  11 CIGCTQCVRACPTDVLeMIPWDgCKAKQIASAPRTEDCVGCKRCESACPT 60
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 40-91 4.42e-04

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 38.52  E-value: 4.42e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507083437  40 CIGCAACVNACP-SNALTVETD------LVTHELAWQFNLGRCIFC--ARCEEVCPTAAIK 91
Cdd:cd04410    8 CIGCGTCEVACKqEHGLRPGPDwsrikvIEGGGLERAFLPVSCMHCedPPCVKACPTGAIY 68
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
31-92 5.16e-04

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 39.53  E-value: 5.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  31 GKPEHNPQQCIGCAACVNACPSNALTVETD-------LVTHELAWQFN----LGrCIFCARCEEVCPTAAIKL 92
Cdd:PRK07118 161 GLPVVDEDKCTGCGACVKACPRNVIELIPKsarvfvaCNSKDKGKAVKkvceVG-CIGCGKCVKACPAGAITM 232
Fer4_16 pfam13484
4Fe-4S double cluster binding domain;
40-86 5.89e-04

4Fe-4S double cluster binding domain;


Pssm-ID: 463893 [Multi-domain]  Cd Length: 65  Bit Score: 36.70  E-value: 5.89e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437   40 CIGCAACVNACPSNAL----------------TVETDLVTHELAWQFNLGRCIFCARCEEVCP 86
Cdd:pfam13484   1 CGSCGKCIDACPTGAIvgpegvldarrcisylTIEKKGLIPDELRCLLGNRCYGCDICQDVCP 63
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
24-58 5.89e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 39.46  E-value: 5.89e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 507083437  24 AVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:COG1148  512 AISIDEKGVAEVNPALCKGCGTCAAACPSGAISLK 546
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 40-92 6.24e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 37.94  E-value: 6.24e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 507083437  40 CIGCAACVNACPSNALTV--ETDLVThelawqfnlgRCIFCA---RCEEVCPTAAIKL 92
Cdd:cd10550   82 CIGCGMCVEACPFGAIRVdpETGKAI----------KCDLCGgdpACVKVCPTGALEF 129
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 31-61 6.30e-04

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 36.94  E-value: 6.30e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 507083437  31 GKPEHNPQQCIGCAACVNACPSNALTVETDL 61
Cdd:COG4231   44 GKAVIDPDLCIGCGSCVQVCPVDAIKLEKRV 74
HybA COG0437
Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and ...
 37-95 6.96e-04

Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and conversion];


Pssm-ID: 440206 [Multi-domain]  Cd Length: 184  Bit Score: 38.39  E-value: 6.96e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 507083437  37 PQQCIGC--AACVNACPSNALTV-ETDLVTHelawqfNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:COG0437   57 PVLCNHCddPPCVKVCPTGATYKrEDGIVLV------DYDKCIGCRYCVAACPYGAPRFNPE 112
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 25-65 8.62e-04

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 36.26  E-value: 8.62e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 507083437  25 VDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLVTHE 65
Cdd:COG1143   22 EDGEPGKVYVIDPDKCIGCGLCVEVCPTGAISMTPFELAVE 62
DMSOR_beta_like cd16374
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 36-98 8.97e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319896 [Multi-domain]  Cd Length: 139  Bit Score: 37.64  E-value: 8.97e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 507083437  36 NPQQCIGCAACVNACPSNALTVETDLvthelawqFNLGRCIFCAR---------CEEVCPTAAIKLSQEYEL 98
Cdd:cd16374   71 DPDKCIGCGMCAMACPFGVPRFDPSL--------KVAVKCDLCIDrrregklpaCVEACPTGALKFGDIEEL 134
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 23-95 9.44e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 37.56  E-value: 9.44e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 507083437  23 IAVDKNFRgKPEHNPQQCIGC--AACVNACPSNALTVetDLVTHelAWQFNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:cd10550   33 IRVVRFEP-EGLDVPVVCRQCedAPCVEACPVGAISR--DEETG--AVVVDEDKCIGCGMCVEACPFGAIRVDPE 102
porD PRK09625
pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
 32-105 1.05e-03

pyruvate flavodoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 236596 [Multi-domain]  Cd Length: 133  Bit Score: 37.42  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVETDLVThelawQFNLGRCIFCARCEEVCPTAAIKL-------SQEYELAVW-KK 103
Cdd:PRK09625  53 KPVHNNEICINCFNCWVYCPDAAILSRDKKLK-----GVDYSHCKGCGVCVEVCPTNPKSLlmfeeqiENETALTQWpKK 127


                 ..
gi 507083437 104 ED 105
Cdd:PRK09625 128 EE 129
GlpC COG0247
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ...
 39-86 1.23e-03

Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];


Pssm-ID: 440017 [Multi-domain]  Cd Length: 420  Bit Score: 38.52  E-value: 1.23e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  39 QCIGCAACVNACPSNALT------------VETDLVTHELAWQFN------LGRCIFCARCEEVCP 86
Cdd:COG0247   79 ACVGCGFCRAMCPSYKATgdekdsprgrinLLREVLEGELPLDLSeevyevLDLCLTCKACETACP 144
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 38-104 1.28e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 38.47  E-value: 1.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083437  38 QQCIGCAACVNACPSNALTVETDLVThelawqfnlgRCIFCAR-------CEEVCPTAAIKLSQEYELAVWKKE 104
Cdd:PRK12809  85 QKCIGCKRCAIACPFGVVEMVDTIAQ----------KCDLCNQrssgtqaCIEVCPTQALRLMDDKGLQQIKVA 148
DMSOR_beta_like cd16374
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 37-100 1.65e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319896 [Multi-domain]  Cd Length: 139  Bit Score: 36.87  E-value: 1.65e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507083437  37 PQQCIGC--AACVNACPSNALTVETDLvthelAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAV 100
Cdd:cd16374   40 PVRCRHCedAPCMEVCPTGAIYRDEDG-----AVLVDPDKCIGCGMCAMACPFGVPRFDPSLKVAV 100
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 44-95 1.65e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 37.16  E-value: 1.65e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 507083437  44 AACVNACPSNALTVETD-LVTHelawqfNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:cd16371   60 PACVKVCPTGAITKREDgIVVV------DQDKCIGCGYCVWACPYGAPQYNPE 106
PLN00071 PLN00071
photosystem I subunit VII; Provisional
 40-87 1.69e-03

photosystem I subunit VII; Provisional


Pssm-ID: 177700 [Multi-domain]  Cd Length: 81  Bit Score: 36.08  E-value: 1.69e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 507083437  40 CIGCAACVNACPSNAL-TVETD-LVTHELAWQFNLGRCIFCARCEEVCPT 87
Cdd:PLN00071  11 CIGCTQCVRACPTDVLeMIPWDgCKAKQIASAPRTEDCVGCKRCESACPT 60
porD PRK09624
pyruvate ferredoxin oxidoreductase subunit delta; Reviewed
 32-95 1.97e-03

pyruvate ferredoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 170017 [Multi-domain]  Cd Length: 105  Bit Score: 36.16  E-value: 1.97e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVEtdlvtHELAWQFNLGRCIFCARCEEVCPTAAIKLSQE 95
Cdd:PRK09624  45 MPEFNRDKCVRCYLCYIYCPEPAIYLD-----EEGYPVFDYDYCKGCGICANECPTKAIEMVRE 103
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 31-58 2.61e-03

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 35.03  E-value: 2.61e-03
                         10        20
                 ....*....|....*....|....*...
gi 507083437  31 GKPEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:COG2221   37 GKLVIDEEKCIGCGACIRVCPTGAIKGE 64
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 33-58 2.80e-03

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 36.45  E-value: 2.80e-03
                         10        20
                 ....*....|....*....|....*.
gi 507083437  33 PEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:cd10564  112 PELDADACTGCGACVSVCPVGAITLT 137
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
40-92 3.11e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 37.22  E-value: 3.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 507083437  40 CIGCAACVNACPSNALTVETDLVthelawQFNLGRCIFCARCEEVCPTAAIKL 92
Cdd:PRK07118 141 CLGLGSCVAACPFDAIHIENGLP------VVDEDKCTGCGACVKACPRNVIEL 187
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 35-92 3.40e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 36.00  E-value: 3.40e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 507083437  35 HNPQQCIGCAACVNACPSNALtvetdlvthelawQFN-----LGRCIFCAR---------CEEVCPTAAIKL 92
Cdd:cd16371   81 VDQDKCIGCGYCVWACPYGAP-------------QYNpetgkMDKCDMCVDrldegekpaCVAACPTRALDF 139
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 38-91 4.21e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 36.08  E-value: 4.21e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 507083437  38 QQCIGCAACVNACPSNAltVETDLVTHELAWQFNLGRCIFCARCEEVCPT---AAIK 91
Cdd:cd16373   97 QGGTDCGVCVEACPTEA--IAIVLEDDVLRPVVDEDKCVGCGLCEYVCPVeppKAIV 151
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 24-58 5.21e-03

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 34.64  E-value: 5.21e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 507083437  24 AVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:COG1144   46 AIRVDDGKYYGIDYDYCKGCGICAEVCPVKAIEMV 80
NapF COG1145
Ferredoxin [Energy production and conversion];
34-59 6.36e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 36.24  E-value: 6.36e-03
                         10        20
                 ....*....|....*....|....*.
gi 507083437  34 EHNPQQCIGCAACVNACPSNALTVET 59
Cdd:COG1145  209 VVDPDKCIGCGACVKVCPVGAISLEP 234
PRK10882 PRK10882
hydrogenase 2 operon protein HybA;
35-90 6.39e-03

hydrogenase 2 operon protein HybA;


Pssm-ID: 236786 [Multi-domain]  Cd Length: 328  Bit Score: 36.19  E-value: 6.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507083437  35 HNPQQCIGCAACVNACPSNALTVETD-----LVTHELAWQFNLGRCIFCAR--CEEVCPTAAI 90
Cdd:PRK10882 140 YDKDVCTGCRYCMVACPFNVPKYDYNnpfgaIHKCELCNQKGVERLDKGGLpgCVEVCPTGAV 202
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
30-60 6.48e-03

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 33.94  E-value: 6.48e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 507083437  30 RGKPEHNPQQCIGCAACVNACPSNALTVETD 60
Cdd:COG2768   32 DGKAVIDPEKCIGCGACIEVCPVGAIKIEWE 62
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
40-61 6.55e-03

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 36.54  E-value: 6.55e-03
                         10        20
                 ....*....|....*....|..
gi 507083437  40 CIGCAACVNACPSNALTVETDL 61
Cdd:COG4624  122 CISCGQCVAVCPFGAITEKSDI 143
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
40-59 7.54e-03

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 35.81  E-value: 7.54e-03
                         10        20
                 ....*....|....*....|
gi 507083437  40 CIGCAACVNACPSNALTVET 59
Cdd:COG0348  238 CINCGRCIDACPKDAIRFSS 257
PRK10194 PRK10194
ferredoxin-type protein NapF;
32-58 8.48e-03

ferredoxin-type protein NapF;


Pssm-ID: 182296 [Multi-domain]  Cd Length: 163  Bit Score: 35.38  E-value: 8.48e-03
                         10        20
                 ....*....|....*....|....*..
gi 507083437  32 KPEHNPQQCIGCAACVNACPSNALTVE 58
Cdd:PRK10194 132 QPQLNSQLCNGCGACAASCPVSAITAE 158
vorD PRK09623
3-methyl-2-oxobutanoate dehydrogenase subunit delta;
18-95 8.95e-03

3-methyl-2-oxobutanoate dehydrogenase subunit delta;


Pssm-ID: 170016 [Multi-domain]  Cd Length: 105  Bit Score: 34.54  E-value: 8.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083437  18 YPLEPIAVDK---NFRG-----KPEHNPQQCIGCAACVNACPSNALTVETDLVThelawQFNLGRCIFCARCEEVCPTAA 89
Cdd:PRK09623  23 YPEAPISLGTtlsNFTGdwrtfMPVVDESKCVKCYICWKFCPEPAIYIKEDGYV-----AIDYDYCKGCGICANECPTKA 97


                 ....*.
gi 507083437  90 IKLSQE 95
Cdd:PRK09623  98 ITMVKE 103
CooF_like cd10563
CooF, iron-sulfur subunit of carbon monoxide dehydrogenase; This family includes CooF, the ...
 34-92 9.20e-03

CooF, iron-sulfur subunit of carbon monoxide dehydrogenase; This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.


Pssm-ID: 319885 [Multi-domain]  Cd Length: 140  Bit Score: 34.92  E-value: 9.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083437  34 EHNPQQCIGCAACVNACPSNALTVETdlvTHELAWqfnlgRCIFCA-----RCEEVCPTAAIKL 92
Cdd:cd10563   84 IHDEEKCVGCWMCVMVCPYGAIRPDK---ERKVAL-----KCDLCPdretpACVEACPTGALVL 139
Fer4_6 pfam12837
4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to ...
 32-55 9.61e-03

4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 432822 [Multi-domain]  Cd Length: 24  Bit Score: 32.59  E-value: 9.61e-03
                          10        20
                  ....*....|....*....|....
gi 507083437   32 KPEHNPQQCIGCAACVNACPSNAL 55
Cdd:pfam12837   1 VVEVDPDKCIGCGRCVVVCPYGAI 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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