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Conserved domains on  [gi|507082121|ref|WP_016152871|]
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MULTISPECIES: DUF1427 family protein [Citrobacter]

Protein Classification

DUF1427 family protein( domain architecture ID 10022546)

DUF1427 family protein such as the XapX domain-containing protein, which may be a component of a xanthosine utilization system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XapX TIGR03510
XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 ...
 3-49 2.46e-07

XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General]


:

Pssm-ID: 274620  Cd Length: 49  Bit Score: 41.75  E-value: 2.46e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 507082121   3 IILSLIAGAIIGFIFTLIKLPIPAPAAWPGVFGIIGVLSGNQIFNYL 49
Cdd:TIGR03510  2 YLLSLLAGLLVGALYSLLDVPSPAPPVLAGLVGLLGMLLGEQAVPWV 48
 
Name Accession Description Interval E-value
XapX TIGR03510
XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 ...
 3-49 2.46e-07

XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General]


Pssm-ID: 274620  Cd Length: 49  Bit Score: 41.75  E-value: 2.46e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 507082121   3 IILSLIAGAIIGFIFTLIKLPIPAPAAWPGVFGIIGVLSGNQIFNYL 49
Cdd:TIGR03510  2 YLLSLLAGLLVGALYSLLDVPSPAPPVLAGLVGLLGMLLGEQAVPWV 48
 
Name Accession Description Interval E-value
XapX TIGR03510
XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 ...
 3-49 2.46e-07

XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General]


Pssm-ID: 274620  Cd Length: 49  Bit Score: 41.75  E-value: 2.46e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 507082121   3 IILSLIAGAIIGFIFTLIKLPIPAPAAWPGVFGIIGVLSGNQIFNYL 49
Cdd:TIGR03510  2 YLLSLLAGLLVGALYSLLDVPSPAPPVLAGLVGLLGMLLGEQAVPWV 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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