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Conserved domains on  [gi|506508042|ref|WP_015975445|]
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MULTISPECIES: nuclease domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbcO super family cl06229
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 8-95 6.61e-29

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


The actual alignment was detected with superfamily member pfam07102:

Pssm-ID: 429293  Cd Length: 91  Bit Score: 99.79  E-value: 6.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506508042    8 AVRDAARDEECTVRIAGICNYRTDTTVFAHL-PDESKGMGTKADDLSGCFACSACHDALDGRRkHDLSAEEVEWYMRRAL 86
Cdd:pfam07102   2 KLRKAARGQECTVRIPGVCNGNPETTVLAHYrLAGTCGTGTKPDDLLAAFACSACHDAIDGRT-PILDAEELELYHAEGV 80


                  ....*....
gi 506508042   87 VRTWRRLFE 95
Cdd:pfam07102  81 LRTQRALRE 89
 
Name Accession Description Interval E-value
YbcO pfam07102
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 8-95 6.61e-29

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


Pssm-ID: 429293  Cd Length: 91  Bit Score: 99.79  E-value: 6.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506508042    8 AVRDAARDEECTVRIAGICNYRTDTTVFAHL-PDESKGMGTKADDLSGCFACSACHDALDGRRkHDLSAEEVEWYMRRAL 86
Cdd:pfam07102   2 KLRKAARGQECTVRIPGVCNGNPETTVLAHYrLAGTCGTGTKPDDLLAAFACSACHDAIDGRT-PILDAEELELYHAEGV 80


                  ....*....
gi 506508042   87 VRTWRRLFE 95
Cdd:pfam07102  81 LRTQRALRE 89
 
Name Accession Description Interval E-value
YbcO pfam07102
Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. ...
 8-95 6.61e-29

Putative nuclease YbcO; This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.


Pssm-ID: 429293  Cd Length: 91  Bit Score: 99.79  E-value: 6.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506508042    8 AVRDAARDEECTVRIAGICNYRTDTTVFAHL-PDESKGMGTKADDLSGCFACSACHDALDGRRkHDLSAEEVEWYMRRAL 86
Cdd:pfam07102   2 KLRKAARGQECTVRIPGVCNGNPETTVLAHYrLAGTCGTGTKPDDLLAAFACSACHDAIDGRT-PILDAEELELYHAEGV 80


                  ....*....
gi 506508042   87 VRTWRRLFE 95
Cdd:pfam07102  81 LRTQRALRE 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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