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Conserved domains on  [gi|506320449|ref|WP_015840224|]
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MULTISPECIES: HI1450 family dsDNA-mimic protein [Pectobacterium]

Protein Classification

YciU family protein( domain architecture ID 10012250)

YciU family protein is a DUF440 domain-containing protein similar to Haemophilus influenzae highly acidic protein HI1450 that is a putative double-stranded DNA mimic

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK05094 PRK05094
dsDNA-mimic protein; Reviewed
1-107 3.15e-60

dsDNA-mimic protein; Reviewed


:

Pssm-ID: 179934  Cd Length: 107  Bit Score: 179.39  E-value: 3.15e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449   1 MDLNNRLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLAENEG 80
Cdd:PRK05094   1 MDLNNRLTEDETLEQAYDIFLELAADNLDPADILLFNLQFEERGGAELVDPAEDWQEHVGFDVDPDFFAEVWIGLANSED 80
                         90       100
                 ....*....|....*....|....*..
gi 506320449  81 DEITDIFARVLICREKDHKLCHILWKE 107
Cdd:PRK05094  81 DEIDDVFARFLISREKDHKLCHILWKE 107
 
Name Accession Description Interval E-value
PRK05094 PRK05094
dsDNA-mimic protein; Reviewed
1-107 3.15e-60

dsDNA-mimic protein; Reviewed


Pssm-ID: 179934  Cd Length: 107  Bit Score: 179.39  E-value: 3.15e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449   1 MDLNNRLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLAENEG 80
Cdd:PRK05094   1 MDLNNRLTEDETLEQAYDIFLELAADNLDPADILLFNLQFEERGGAELVDPAEDWQEHVGFDVDPDFFAEVWIGLANSED 80
                         90       100
                 ....*....|....*....|....*..
gi 506320449  81 DEITDIFARVLICREKDHKLCHILWKE 107
Cdd:PRK05094  81 DEIDDVFARFLISREKDHKLCHILWKE 107
YciU COG3099
Uncharacterized conserved protein YciU, UPF0263 family [Function unknown];
1-107 5.23e-51

Uncharacterized conserved protein YciU, UPF0263 family [Function unknown];


Pssm-ID: 442333  Cd Length: 107  Bit Score: 156.30  E-value: 5.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449   1 MDLNNRLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLAeNEG 80
Cdd:COG3099    2 MDLMNLLSEDELIDTAYDIFLELAADNLDPADILLFNLQFEERGAVELVDPGDDWEEEVGFDVDPEEFAEVWIGLV-NEE 80
                         90       100
                 ....*....|....*....|....*..
gi 506320449  81 DEITDIFARVLICREKDHKLCHILWKE 107
Cdd:COG3099   81 DEIDDVFARILISRDPDEKFCHILWKR 107
DUF440 pfam04269
Protein of unknown function, DUF440; This family consists of uncharacterized bacterial ...
6-107 7.59e-49

Protein of unknown function, DUF440; This family consists of uncharacterized bacterial proteins.


Pssm-ID: 427831  Cd Length: 101  Bit Score: 150.62  E-value: 7.59e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449    6 RLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLaENEGDEITD 85
Cdd:pfam04269   1 RLTEDEAIEQAYDIFLELAPDNLDPADILLFNLQFEERGGAEEVEPADDWEEEVGFEVDPEEYAEVWIGL-ENEQDEIDD 79
                          90       100
                  ....*....|....*....|..
gi 506320449   86 IFARVLICREKDHKLCHILWKE 107
Cdd:pfam04269  80 IFARILISRDKEHPFCHILWKE 101
 
Name Accession Description Interval E-value
PRK05094 PRK05094
dsDNA-mimic protein; Reviewed
1-107 3.15e-60

dsDNA-mimic protein; Reviewed


Pssm-ID: 179934  Cd Length: 107  Bit Score: 179.39  E-value: 3.15e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449   1 MDLNNRLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLAENEG 80
Cdd:PRK05094   1 MDLNNRLTEDETLEQAYDIFLELAADNLDPADILLFNLQFEERGGAELVDPAEDWQEHVGFDVDPDFFAEVWIGLANSED 80
                         90       100
                 ....*....|....*....|....*..
gi 506320449  81 DEITDIFARVLICREKDHKLCHILWKE 107
Cdd:PRK05094  81 DEIDDVFARFLISREKDHKLCHILWKE 107
YciU COG3099
Uncharacterized conserved protein YciU, UPF0263 family [Function unknown];
1-107 5.23e-51

Uncharacterized conserved protein YciU, UPF0263 family [Function unknown];


Pssm-ID: 442333  Cd Length: 107  Bit Score: 156.30  E-value: 5.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449   1 MDLNNRLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLAeNEG 80
Cdd:COG3099    2 MDLMNLLSEDELIDTAYDIFLELAADNLDPADILLFNLQFEERGAVELVDPGDDWEEEVGFDVDPEEFAEVWIGLV-NEE 80
                         90       100
                 ....*....|....*....|....*..
gi 506320449  81 DEITDIFARVLICREKDHKLCHILWKE 107
Cdd:COG3099   81 DEIDDVFARILISRDPDEKFCHILWKR 107
DUF440 pfam04269
Protein of unknown function, DUF440; This family consists of uncharacterized bacterial ...
6-107 7.59e-49

Protein of unknown function, DUF440; This family consists of uncharacterized bacterial proteins.


Pssm-ID: 427831  Cd Length: 101  Bit Score: 150.62  E-value: 7.59e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506320449    6 RLTEDEALEQAYDIFLELAADNLDPADILLFNLQFEERGGAELFDPAEDWAEHVDFDLNPDFFAEVVIGLaENEGDEITD 85
Cdd:pfam04269   1 RLTEDEAIEQAYDIFLELAPDNLDPADILLFNLQFEERGGAEEVEPADDWEEEVGFEVDPEEYAEVWIGL-ENEQDEIDD 79
                          90       100
                  ....*....|....*....|..
gi 506320449   86 IFARVLICREKDHKLCHILWKE 107
Cdd:pfam04269  80 IFARILISRDKEHPFCHILWKE 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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