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Conserved domains on  [gi|506237333|ref|WP_015757108|]
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YecA family protein [Desulfofarcimen acetoxidans]

Protein Classification

YecA family protein( domain architecture ID 11462391)

YecA family protein similar to Escherichia coli uncharacterized protein YecA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 206-241 4.22e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


:

Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.14  E-value: 4.22e-10
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 506237333 206 DRWMLEIEKRLKPEfvgAQRNAPCPCGSAKKYKKCC 241
Cdd:COG3318   10 DLWALAIPRRAEPK---VGRNDPCPCGSGKKYKKCC 42
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 206-241 4.22e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.14  E-value: 4.22e-10
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 506237333 206 DRWMLEIEKRLKPEfvgAQRNAPCPCGSAKKYKKCC 241
Cdd:COG3318   10 DLWALAIPRRAEPK---VGRNDPCPCGSGKKYKKCC 42
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 223-241 2.94e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.77  E-value: 2.94e-08
                          10
                  ....*....|....*....
gi 506237333  223 AQRNAPCPCGSAKKYKKCC 241
Cdd:TIGR04102  89 PNRNDPCPCGSGKKYKKCC 107
PRK01617 PRK01617
hypothetical protein; Provisional
 225-241 1.25e-07

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 50.03  E-value: 1.25e-07
                         10
                 ....*....|....*..
gi 506237333 225 RNAPCPCGSAKKYKKCC 241
Cdd:PRK01617 136 RNDPCPCGSGKKFKKCC 152
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 225-242 1.27e-07

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 46.70  E-value: 1.27e-07
                          10
                  ....*....|....*...
gi 506237333  225 RNAPCPCGSAKKYKKCCY 242
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 206-241 4.22e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.14  E-value: 4.22e-10
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 506237333 206 DRWMLEIEKRLKPEfvgAQRNAPCPCGSAKKYKKCC 241
Cdd:COG3318   10 DLWALAIPRRAEPK---VGRNDPCPCGSGKKYKKCC 42
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 223-241 2.94e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.77  E-value: 2.94e-08
                          10
                  ....*....|....*....
gi 506237333  223 AQRNAPCPCGSAKKYKKCC 241
Cdd:TIGR04102  89 PNRNDPCPCGSGKKYKKCC 107
PRK01617 PRK01617
hypothetical protein; Provisional
 225-241 1.25e-07

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 50.03  E-value: 1.25e-07
                         10
                 ....*....|....*..
gi 506237333 225 RNAPCPCGSAKKYKKCC 241
Cdd:PRK01617 136 RNDPCPCGSGKKFKKCC 152
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 225-242 1.27e-07

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 46.70  E-value: 1.27e-07
                          10
                  ....*....|....*...
gi 506237333  225 RNAPCPCGSAKKYKKCCY 242
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 224-241 5.56e-07

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 50.41  E-value: 5.56e-07
                         10
                 ....*....|....*...
gi 506237333 224 QRNAPCPCGSAKKYKKCC 241
Cdd:COG0653  855 GRNDPCPCGSGKKYKHCH 872
PRK10396 PRK10396
hypothetical protein; Provisional
 205-241 1.48e-06

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 47.82  E-value: 1.48e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 506237333 205 YDRWM--LEIEKRLKPEFVGAQ--RNAPCPCGSAKKYKKCC 241
Cdd:PRK10396 179 HAYWMahPQEKAVQQPIKAEEKvgRNDPCPCGSGKKFKQCC 219
PRK05590 PRK05590
hypothetical protein; Provisional
 225-241 1.73e-06

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 46.89  E-value: 1.73e-06
                         10
                 ....*....|....*..
gi 506237333 225 RNAPCPCGSAKKYKKCC 241
Cdd:PRK05590 147 RNDPCPCGSGKKYKKCC 163
PRK00183 PRK00183
hypothetical protein; Provisional
 221-243 2.87e-05

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 43.25  E-value: 2.87e-05
                         10        20
                 ....*....|....*....|...
gi 506237333 221 VGAQRNAPCPCGSAKKYKKCCYG 243
Cdd:PRK00183 132 LKAGRNDPCPCGSGQKFKKCCAP 154
PRK02250 PRK02250
hypothetical protein; Provisional
 225-241 1.80e-04

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 41.02  E-value: 1.80e-04
                         10
                 ....*....|....*..
gi 506237333 225 RNAPCPCGSAKKYKKCC 241
Cdd:PRK02250 149 RNDPCICGSGKKFKKCC 165
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 227-241 3.13e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 41.99  E-value: 3.13e-04
                         10
                 ....*....|....*
gi 506237333 227 APCPCGSAKKYKKCC 241
Cdd:PRK12904 812 DPCPCGSGKKYKHCH 826
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 225-241 5.29e-04

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 39.44  E-value: 5.29e-04
                         10
                 ....*....|....*..
gi 506237333 225 RNAPCPCGSAKKYKKCC 241
Cdd:COG3012    2 SNSPCPCGSGKPYADCC 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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