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Conserved domains on  [gi|505805493|ref|WP_015703259|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit B family protein [Klebsiella]

Protein Classification

NADH-quinone oxidoreductase subunit B family protein( domain architecture ID 10007134)

NADH-quinone oxidoreductase subunit B (NuoB) family protein such as Escherichia coli formate hydrogenlyase subunit 7

EC:  1.-.-.-
Gene Ontology:  GO:0048038|GO:0008137|GO:0022900|GO:1990204
PubMed:  9299297|10449365
SCOP:  4000435

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
32-168 5.35e-85

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


:

Pssm-ID: 442491  Cd Length: 137  Bit Score: 249.32  E-value: 5.35e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  32 KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS 111
Cdd:COG3260    1 KVLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 505805493 112 YGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
Cdd:COG3260   81 VGDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
32-168 5.35e-85

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 249.32  E-value: 5.35e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  32 KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS 111
Cdd:COG3260    1 KVLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 505805493 112 YGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
Cdd:COG3260   81 VGDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
45-167 8.61e-41

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 138.57  E-value: 8.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  45 CGGCngCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMrSPALR-AWQSAPDPKICISYGACGNSGGIFH 123
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 505805493 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMalglLEQKI 167
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILK----LQKKI 159
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 51-167 1.49e-39

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 134.02  E-value: 1.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493   51 CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMrSPAL-RAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 505805493  129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAmalgLLEQKI 167
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKI 142
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
48-159 6.85e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 123.85  E-value: 6.85e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493   48 CNGCEIEIFATLSPLFDA-----ERFGIKVVPSPR----HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 505805493  119 GGIF---HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
Cdd:pfam01058  81 GGIPaagNNPSYGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
32-168 5.35e-85

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 249.32  E-value: 5.35e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  32 KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS 111
Cdd:COG3260    1 KVLGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 505805493 112 YGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
Cdd:COG3260   81 VGDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 51-173 4.64e-42

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 140.70  E-value: 4.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
Cdd:COG0377   26 CAIEMMAAGASRYDLERFGAEVPrASPRQADLMIVAGTVTKKMAPVLRRLYEQMPEPKWVIAMGACAISGGPYWDSYSVV 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 505805493 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMalglLEQKIHARQPG 173
Cdd:COG0377  106 QGVDKIIPVDVYVPGCPPRPEALLDGILK----LQEKIRRERLR 145
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
45-167 8.61e-41

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 138.57  E-value: 8.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  45 CGGCngCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMrSPALR-AWQSAPDPKICISYGACGNSGGIFH 123
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 505805493 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMalglLEQKI 167
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILK----LQKKI 159
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 51-167 1.49e-39

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 134.02  E-value: 1.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493   51 CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMrSPAL-RAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 505805493  129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAmalgLLEQKI 167
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKI 142
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
48-159 6.85e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 123.85  E-value: 6.85e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493   48 CNGCEIEIFATLSPLFDA-----ERFGIKVVPSPR----HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 505805493  119 GGIF---HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
Cdd:pfam01058  81 GGIPaagNNPSYGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
51-185 2.37e-30

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 113.93  E-value: 2.37e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
Cdd:PRK14819  43 CAIEMMATGLSRYDLARFGAELFrASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVL 122

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505805493 130 GGTDKIVPVDVYIPGCPPTPAATLYgfamALGLLEQKIHA------RQPGELDD-QPTELLHP 185
Cdd:PRK14819 123 RGIDLLIPVDVYIPGCPPRPEALLH----ALMTLQKQIDAqslgrvRWYGSGDKgQTKEFPVP 181
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 47-174 6.18e-29

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 108.07  E-value: 6.18e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  47 GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDl 125
Cdd:PRK14815  41 GLACCAIELMAVACSRFDISRFGAEVMRfSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYRS- 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 505805493 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLygfaMALGLLEQKIHARQPGE 174
Cdd:PRK14815 120 YSVLQGVDRILPVDVYISGCPPRPEAIL----DALIKLQKKIDTERAAR 164
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
51-156 6.29e-29

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 107.61  E-value: 6.29e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMrSPALR-AWQSAPDPKICISYGACGNSGGIFhDLYCV 128
Cdd:PRK14820  45 CGIEFMATMASHYDLARFGSERPSfSPRQADMLMVMGTIAKKM-APVLKqVYLQMAEPRWVVAVGACASSGGIF-DTYSV 122

                         90       100
                 ....*....|....*....|....*...
gi 505805493 129 WGGTDKIVPVDVYIPGCPPTPAATLYGF 156
Cdd:PRK14820 123 LQGIDRIIPVDVYVPGCPPRPEQIIDGV 150
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 51-156 9.67e-29

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 106.96  E-value: 9.67e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
Cdd:PRK14818  43 CGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCK 122

                         90       100
                 ....*....|....*....|....*.
gi 505805493 131 GTDKIVPVDVYIPGCPPTPAATLYGF 156
Cdd:PRK14818 123 GVDKVIPVDVYVPGCPPRPEALTEGL 148
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
47-171 6.36e-28

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 111.79  E-value: 6.36e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  47 GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFhDL 125
Cdd:PRK13292  30 GLSCCFVEMMTSFTSRYDISRFGAEVLrGTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DV 108

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 505805493 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGfamaLGLLEQKIHARQ 171
Cdd:PRK13292 109 YSVVQGVNQILPVDVYIPGCPPRPEAFLQG----LMLLQEKIRREE 150
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
51-155 3.21e-27

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 103.45  E-value: 3.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
Cdd:PRK14816  53 CGIEFMALGAARYDMARFGFEVArASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVL 132

                         90       100
                 ....*....|....*....|....*.
gi 505805493 130 GGTDKIVPVDVYIPGCPPTPAATLYG 155
Cdd:PRK14816 133 NGVDKILPVDVYIPGCPPRPEAFYYG 158
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 51-156 4.46e-26

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 100.73  E-value: 4.46e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-HDLYCVW 129
Cdd:PRK14813  40 CAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYwEHGYHVL 119

                         90       100
                 ....*....|....*....|....*..
gi 505805493 130 GGTDKIVPVDVYIPGCPPTPAATLYGF 156
Cdd:PRK14813 120 KGVDRIIPVDVYVPGCPPRPEALIGGL 146
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
21-179 1.01e-25

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 99.65  E-value: 1.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  21 ESIASMKASLLKKIKRSAYVYRVDCggcngCEIEIFATLSPLFDAERFGIKVvP--SPRHADILLFTGAVTrAMRSPAL- 97
Cdd:PRK14817  22 QGLVSKSLGWARKYSLFTYPFVTAC-----CGMEYMTMASARYDSDRFGAAM-PrfSPRQADLLMVVGTVN-CKQAPILq 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  98 RAWQSAPDPKICISYGACGNSGGiFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGfamaLGLLEQKIHARQPGELDD 177
Cdd:PRK14817  95 RVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDG----IMLLQKKIQNQSHKLIDR 169


                 ..
gi 505805493 178 QP 179
Cdd:PRK14817 170 KP 171
ndhK CHL00023
NADH dehydrogenase subunit K
 47-151 1.28e-25

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 100.17  E-value: 1.28e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  47 GCNGCEIEiFATL-SPLFDAERFGIkvVP--SPRHADILLFTGAVTRAMrSPAL-RAWQSAPDPKICISYGACGNSGGIF 122
Cdd:CHL00023  40 GTSCCFIE-FASLiGSRFDFDRYGL--VPrsSPRQADLILTAGTVTMKM-APSLvRLYEQMPEPKYVIAMGACTITGGMF 115

                         90       100       110
                 ....*....|....*....|....*....|
gi 505805493 123 H-DLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
Cdd:CHL00023 116 StDSYSTVRGVDKLIPVDVYLPGCPPKPEA 145
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 51-153 5.20e-25

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 97.79  E-value: 5.20e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  51 CEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMrSPALRA-WQSAPDPKICISYGACGNSGGIFHDlYCV 128
Cdd:PRK14814  45 CGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKM-APVLRQiYDQMAEPKFVISVGACASSGGMFHT-YGV 122

                         90       100
                 ....*....|....*....|....*
gi 505805493 129 WGGTDKIVPVDVYIPGCPPTPAATL 153
Cdd:PRK14814 123 LQGVDRILPVDVYVPGCPPRPEAIL 147
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
43-154 1.41e-10

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 59.94  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505805493  43 VDCGGCNGCEIEIFATLSPLFD-AERFGIK-------VVPSPRHADILLFTGAVT--------RAMRSPAlrawqsapdp 106
Cdd:COG1941    9 YWLAGCSGCQLSFLDLDERLLDlLELVEIVyfpeasdVKEIPEPVDVALVEGSIRneeneerlKEIREKS---------- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505805493 107 KICISYGACGNSGGI-----FHD----LYCVWGGT----------------------DKIVPVDVYIPGCPPTPAATLY 154
Cdd:COG1941   79 KILVALGACAVTGGIpalrnLYDleelLERVYGETpstnpqipgeelpelldrvrplSEVVKVDYELPGCPPDPDQILE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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