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Conserved domains on  [gi|505384677|ref|WP_015571779|]
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MULTISPECIES: cytochrome d ubiquinol oxidase subunit II [Enterobacterales]

Protein Classification

cytochrome d ubiquinol oxidase subunit II( domain architecture ID 11441864)

cytochrome d ubiquinol oxidase subunit II is a component of a terminal oxidase that produces a proton motive force using protons and electrons from opposite sides of the membrane to generate water

EC:  7.1.1.7
PubMed:  21756872

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AppB COG1294
Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];
6-333 9.06e-122

Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];


:

Pssm-ID: 440905  Cd Length: 333  Bit Score: 353.28  E-value: 9.06e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   6 PVIWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALT 84
Cdd:COG1294    2 PLIWFLLIGVLLIGYVILDGFDLGVGILLPFAGkDDEERRVMINSIGPVWDGNEVWLVLGGGALFAAFPLAYATLFSGLY 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  85 IPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGGSLLATFSQGIVVGAMINGFDVE-GRRFVGSSLDWFTPFNLF 162
Cdd:COG1294   82 LPLLLILLALIFRGVAFEFRSKAdSPRWRRLWDWAFFIGSLLPAFLLGVALGNLLQGVPFDaDGDYTGGFFDLLNPFALL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 163 CGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTPLGWQFVAERWFTLPnffWFLPVPVLVAV 242
Cdd:COG1294  162 GGLASVALYLLLGATFLALKTEGELQERARRLARRLALATLVLFALVSLWTPLAAPALFANWFSYP---WLWPLPLLAVL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 243 FSLWIWRLTRnPDSHARPFLLTLGLIFLGFSGLGISLWPHIIPPH-----ITLWEAAAPPASQLFMLIGTLLIIPVILVY 317
Cdd:COG1294  239 AALLAVRALR-RGREGLAFLASALLIALAVAGLGISLFPYLLPSSdpassLTIWDAASSPYTLKIMLVVALIFLPIVLAY 317
                        330
                 ....*....|....*.
gi 505384677 318 TAWSYYVFRGKVSDTE 333
Cdd:COG1294  318 TAWVYRVFRGKVTAEE 333
 
Name Accession Description Interval E-value
AppB COG1294
Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];
6-333 9.06e-122

Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 440905  Cd Length: 333  Bit Score: 353.28  E-value: 9.06e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   6 PVIWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALT 84
Cdd:COG1294    2 PLIWFLLIGVLLIGYVILDGFDLGVGILLPFAGkDDEERRVMINSIGPVWDGNEVWLVLGGGALFAAFPLAYATLFSGLY 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  85 IPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGGSLLATFSQGIVVGAMINGFDVE-GRRFVGSSLDWFTPFNLF 162
Cdd:COG1294   82 LPLLLILLALIFRGVAFEFRSKAdSPRWRRLWDWAFFIGSLLPAFLLGVALGNLLQGVPFDaDGDYTGGFFDLLNPFALL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 163 CGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTPLGWQFVAERWFTLPnffWFLPVPVLVAV 242
Cdd:COG1294  162 GGLASVALYLLLGATFLALKTEGELQERARRLARRLALATLVLFALVSLWTPLAAPALFANWFSYP---WLWPLPLLAVL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 243 FSLWIWRLTRnPDSHARPFLLTLGLIFLGFSGLGISLWPHIIPPH-----ITLWEAAAPPASQLFMLIGTLLIIPVILVY 317
Cdd:COG1294  239 AALLAVRALR-RGREGLAFLASALLIALAVAGLGISLFPYLLPSSdpassLTIWDAASSPYTLKIMLVVALIFLPIVLAY 317
                        330
                 ....*....|....*.
gi 505384677 318 TAWSYYVFRGKVSDTE 333
Cdd:COG1294  318 TAWVYRVFRGKVTAEE 333
Cyt_bd_oxida_II pfam02322
Cytochrome bd terminal oxidase subunit II; This family consists of cytochrome bd type terminal ...
6-325 9.68e-108

Cytochrome bd terminal oxidase subunit II; This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family Swiss:O05192 is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.


Pssm-ID: 460532  Cd Length: 309  Bit Score: 316.70  E-value: 9.68e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677    6 PVIWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALT 84
Cdd:pfam02322   2 PLIWFLLIGLLLAGYVVLDGFDFGVGILLPFLGkTDEERRVMINSIGPVWDGNEVWLVLAGGALFAAFPLAYATLFSGLY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   85 IPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGGSLLATFSQGIVVGAMINGFDVEGRRFVGSSLDWFTPFNLFC 163
Cdd:pfam02322  82 LPLLLILLGLILRGVAFEFRSKAdSPRWRRTWDWAFFIGSLLAPFLLGVALGNLLQGVPFDADGFYGFFSDLLNPFALLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  164 GLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTplgwqfvaerWFTLPNFFWFLPVPVLVAVF 243
Cdd:pfam02322 162 GLAVVALFALLGALYLALKTEGELQERARRLARRLGLVLLVAFVAFLLWT----------PFAPWLWLVLALLAVLALLL 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  244 SLWIWRLTRnpdsHARPFLLTLGLIFLGFSGLGISLWPHIIPPHITLWEAAAPPASQLFMLIGTLLIIPVILVYTAWSYY 323
Cdd:pfam02322 232 AVLLLRAGR----EGLAFLASALTVLLVVAGLGISLFPYLLPSSLTIWNAASSPYTLKIMLIVALIGLPIVLAYTAWLYR 307

                  ..
gi 505384677  324 VF 325
Cdd:pfam02322 308 VF 309
cydB TIGR00203
cytochrome d oxidase, subunit II (cydB); part of a two component cytochrome D terminal complex. ...
8-330 1.70e-42

cytochrome d oxidase, subunit II (cydB); part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport]


Pssm-ID: 129307  Cd Length: 378  Bit Score: 151.17  E-value: 1.70e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677    8 IWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIP 86
Cdd:TIGR00203  10 IWWLLVGVLLVGFFVTDGFDMGVGMLTRFLGrNELERRIMINTIGPHWDGNQVWLLTAGGAIFAAWPNVYAAAFSGFYIA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   87 LTAMLIGLIFRGVAFEFRFK-ATPSHRKFWDYSFAGGSLLATFSQGIVVGAMING----FDVEGR-RFVGSSLDWFTPFN 160
Cdd:TIGR00203  90 MVLVLAALFFRPVAFEYRGKiDHLRWRKVWDWGLFIGSLVPPLVFGVAFGNLLQGvpfdFDENLRvHYTGSFFQLLNPFS 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  161 LFCGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIW-------------------TPLGWQFVA 221
Cdd:TIGR00203 170 LLCGVTSLGMCITHGAMWLQLRTVGDLHLRARKMAQKAALVVLVAFLLAGVWsaygidgfvvrsqdhnapsNPLNKEVAV 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  222 ERWFTLPNF-----FWFLPVPVLVAvFSLWIWRLTRNPDSHArpFLLTLGLIFLGFSGLGISLWPHIIPPH------ITL 290
Cdd:TIGR00203 250 EPGAWMNNFneepiLWIFPALGVVC-PLLTAVFIRKKKDGWA--FGMSSLTLAGVIGTAGISLFPFVMPSSlhpaysLTM 326
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 505384677  291 WEAAAPPASQLFMLIGTLLIIPVILVYTAWSYYVFRGKVS 330
Cdd:TIGR00203 327 WDATSSQLTLKVMLIAALVLLPIVLLYTIWSYYKMFGRVT 366
PRK15003 PRK15003
cytochrome d ubiquinol oxidase subunit II;
8-330 9.59e-36

cytochrome d ubiquinol oxidase subunit II;


Pssm-ID: 184965  Cd Length: 379  Bit Score: 133.16  E-value: 9.59e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   8 IWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIP 86
Cdd:PRK15003  10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGrNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVA 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  87 LTAMLIGLIFRGVAFEFRFK-ATPSHRKFWDYSFAGGSLLATFSQGIVVGAMING--FDVE---GRRFVGSSLDWFTPFN 160
Cdd:PRK15003  90 MILVLASLFFRPVGFDYRSKiEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGvpFNVDeylRLYYTGNFFQLLNPFG 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 161 LFCGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIW--------------------TPLGWQFV 220
Cdd:PRK15003 170 LLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWvmygidgyvvkstmdhyaasNPLNKEVV 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 221 AERWFTLPNF-----FWflPVPVLVAVFSLwIWRLTRNPDSHARPFL---LTLGLIFLgfsGLGISLWPHIIPP------ 286
Cdd:PRK15003 250 REAGAWLVNFnntpiLW--AIPALGVVLPL-LTILTARMDKAAWAFVfssLTLACIIL---TAGIAMFPFVMPSstmmna 323
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 505384677 287 HITLWEAAAPPASQLFMLIGTLLIIPVILVYTAWSYYVFRGKVS 330
Cdd:PRK15003 324 SLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367
 
Name Accession Description Interval E-value
AppB COG1294
Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];
6-333 9.06e-122

Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 440905  Cd Length: 333  Bit Score: 353.28  E-value: 9.06e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   6 PVIWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALT 84
Cdd:COG1294    2 PLIWFLLIGVLLIGYVILDGFDLGVGILLPFAGkDDEERRVMINSIGPVWDGNEVWLVLGGGALFAAFPLAYATLFSGLY 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  85 IPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGGSLLATFSQGIVVGAMINGFDVE-GRRFVGSSLDWFTPFNLF 162
Cdd:COG1294   82 LPLLLILLALIFRGVAFEFRSKAdSPRWRRLWDWAFFIGSLLPAFLLGVALGNLLQGVPFDaDGDYTGGFFDLLNPFALL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 163 CGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTPLGWQFVAERWFTLPnffWFLPVPVLVAV 242
Cdd:COG1294  162 GGLASVALYLLLGATFLALKTEGELQERARRLARRLALATLVLFALVSLWTPLAAPALFANWFSYP---WLWPLPLLAVL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 243 FSLWIWRLTRnPDSHARPFLLTLGLIFLGFSGLGISLWPHIIPPH-----ITLWEAAAPPASQLFMLIGTLLIIPVILVY 317
Cdd:COG1294  239 AALLAVRALR-RGREGLAFLASALLIALAVAGLGISLFPYLLPSSdpassLTIWDAASSPYTLKIMLVVALIFLPIVLAY 317
                        330
                 ....*....|....*.
gi 505384677 318 TAWSYYVFRGKVSDTE 333
Cdd:COG1294  318 TAWVYRVFRGKVTAEE 333
Cyt_bd_oxida_II pfam02322
Cytochrome bd terminal oxidase subunit II; This family consists of cytochrome bd type terminal ...
6-325 9.68e-108

Cytochrome bd terminal oxidase subunit II; This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family Swiss:O05192 is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.


Pssm-ID: 460532  Cd Length: 309  Bit Score: 316.70  E-value: 9.68e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677    6 PVIWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALT 84
Cdd:pfam02322   2 PLIWFLLIGLLLAGYVVLDGFDFGVGILLPFLGkTDEERRVMINSIGPVWDGNEVWLVLAGGALFAAFPLAYATLFSGLY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   85 IPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGGSLLATFSQGIVVGAMINGFDVEGRRFVGSSLDWFTPFNLFC 163
Cdd:pfam02322  82 LPLLLILLGLILRGVAFEFRSKAdSPRWRRTWDWAFFIGSLLAPFLLGVALGNLLQGVPFDADGFYGFFSDLLNPFALLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  164 GLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTplgwqfvaerWFTLPNFFWFLPVPVLVAVF 243
Cdd:pfam02322 162 GLAVVALFALLGALYLALKTEGELQERARRLARRLGLVLLVAFVAFLLWT----------PFAPWLWLVLALLAVLALLL 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  244 SLWIWRLTRnpdsHARPFLLTLGLIFLGFSGLGISLWPHIIPPHITLWEAAAPPASQLFMLIGTLLIIPVILVYTAWSYY 323
Cdd:pfam02322 232 AVLLLRAGR----EGLAFLASALTVLLVVAGLGISLFPYLLPSSLTIWNAASSPYTLKIMLIVALIGLPIVLAYTAWLYR 307

                  ..
gi 505384677  324 VF 325
Cdd:pfam02322 308 VF 309
cydB TIGR00203
cytochrome d oxidase, subunit II (cydB); part of a two component cytochrome D terminal complex. ...
8-330 1.70e-42

cytochrome d oxidase, subunit II (cydB); part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport]


Pssm-ID: 129307  Cd Length: 378  Bit Score: 151.17  E-value: 1.70e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677    8 IWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIP 86
Cdd:TIGR00203  10 IWWLLVGVLLVGFFVTDGFDMGVGMLTRFLGrNELERRIMINTIGPHWDGNQVWLLTAGGAIFAAWPNVYAAAFSGFYIA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   87 LTAMLIGLIFRGVAFEFRFK-ATPSHRKFWDYSFAGGSLLATFSQGIVVGAMING----FDVEGR-RFVGSSLDWFTPFN 160
Cdd:TIGR00203  90 MVLVLAALFFRPVAFEYRGKiDHLRWRKVWDWGLFIGSLVPPLVFGVAFGNLLQGvpfdFDENLRvHYTGSFFQLLNPFS 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  161 LFCGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIW-------------------TPLGWQFVA 221
Cdd:TIGR00203 170 LLCGVTSLGMCITHGAMWLQLRTVGDLHLRARKMAQKAALVVLVAFLLAGVWsaygidgfvvrsqdhnapsNPLNKEVAV 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  222 ERWFTLPNF-----FWFLPVPVLVAvFSLWIWRLTRNPDSHArpFLLTLGLIFLGFSGLGISLWPHIIPPH------ITL 290
Cdd:TIGR00203 250 EPGAWMNNFneepiLWIFPALGVVC-PLLTAVFIRKKKDGWA--FGMSSLTLAGVIGTAGISLFPFVMPSSlhpaysLTM 326
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 505384677  291 WEAAAPPASQLFMLIGTLLIIPVILVYTAWSYYVFRGKVS 330
Cdd:TIGR00203 327 WDATSSQLTLKVMLIAALVLLPIVLLYTIWSYYKMFGRVT 366
PRK15003 PRK15003
cytochrome d ubiquinol oxidase subunit II;
8-330 9.59e-36

cytochrome d ubiquinol oxidase subunit II;


Pssm-ID: 184965  Cd Length: 379  Bit Score: 133.16  E-value: 9.59e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   8 IWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIP 86
Cdd:PRK15003  10 IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGrNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVA 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  87 LTAMLIGLIFRGVAFEFRFK-ATPSHRKFWDYSFAGGSLLATFSQGIVVGAMING--FDVE---GRRFVGSSLDWFTPFN 160
Cdd:PRK15003  90 MILVLASLFFRPVGFDYRSKiEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGvpFNVDeylRLYYTGNFFQLLNPFG 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 161 LFCGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIW--------------------TPLGWQFV 220
Cdd:PRK15003 170 LLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWvmygidgyvvkstmdhyaasNPLNKEVV 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 221 AERWFTLPNF-----FWflPVPVLVAVFSLwIWRLTRNPDSHARPFL---LTLGLIFLgfsGLGISLWPHIIPP------ 286
Cdd:PRK15003 250 REAGAWLVNFnntpiLW--AIPALGVVLPL-LTILTARMDKAAWAFVfssLTLACIIL---TAGIAMFPFVMPSstmmna 323
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 505384677 287 HITLWEAAAPPASQLFMLIGTLLIIPVILVYTAWSYYVFRGKVS 330
Cdd:PRK15003 324 SLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367
PRK15028 PRK15028
cytochrome d ubiquinol oxidase subunit II;
8-330 1.02e-32

cytochrome d ubiquinol oxidase subunit II;


Pssm-ID: 184988  Cd Length: 378  Bit Score: 125.01  E-value: 1.02e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677   8 IWFAIIVFATLMYIIMDGFDLGIGMLFSFVG-DAKERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIP 86
Cdd:PRK15028  10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVArNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVA 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677  87 LTAMLIGLIFRGVAFEFRFK-ATPSHRKFWDYSFAGGSLLATFSQGIVVGAMING----FDVEGR-RFVGSSLDWFTPFN 160
Cdd:PRK15028  90 MILVLCSLFFRPLAFDYRGKiADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGvpfaFTPQLRvEYLGSFWQLLTPFP 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 161 LFCGLGLIVAYTLLATTWLIMKSEGALQNRMRELTRHVLLALIAVIAVVSIWTPLG------------------WQFVAE 222
Cdd:PRK15028 170 LLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGidgfvllaqdangpsnplMKLVAV 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384677 223 RWFTLPNFFWFLPVPVLVAVFSLWIWRLTRNPDSHARPF-------LLTLGLIFLGfsglGISLWPHIIPPHI------T 289
Cdd:PRK15028 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGwgflmasLMQFGVIFTA----GITLFPFVMPSSVspisslT 325
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 505384677 290 LWEAAAPPASQLFMLIGTLLIIPVILVYTAWSYYVFRGKVS 330
Cdd:PRK15028 326 LWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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