|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
1-506 |
0e+00 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 716.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 1 MDTS-LIYGIGGVAiGMLLGWLIASLRvqqtHAQHETELRLleqalqqaqqetaarqetlqrheqqsrqselELRNLHSQ 79
Cdd:PRK10361 1 MDFSiMVYAVIALV-GVAIGWLFASYQ----HAQQKAEQLA-------------------------------EREEMVAE 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 80 LAAGHEKLQQLNHWRNECELLNQELRAQREVNSAQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRIFE 159
Cdd:PRK10361 45 LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 160 HSGRKVDEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKGDNKTQGN 239
Cdd:PRK10361 125 HSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 240 WGEVVLSRVLEASGLREGHEYETQVNVRVDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYERYFNGEDEAEREAALSEHI 319
Cdd:PRK10361 205 WGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 320 ASLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPTTLLVALRTITNLWRYEHQ 399
Cdd:PRK10361 285 ASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQ 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 400 SQNAQRIADRAAKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSEGRGNLIGQIEGFRALGVEVKRPINPLLAQQAG 479
Cdd:PRK10361 365 SRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAV 444
|
490 500
....*....|....*....|....*...
gi 505189201 480 AQHDE-AEEANDDDVAALPQTNDDDDTA 506
Cdd:PRK10361 445 SQDEEyRLRSVPEQPNDEAYQRDDEYNQ 472
|
|
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
142-485 |
2.72e-153 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 440.76 E-value: 2.72e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 142 SEQRLTTQFENLANRIFEHSGRKVDEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAR 221
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 222 EAINLTKALKgDNKTQGNWGEVVLSRVLEASGLREGHEYETQVNVRVDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYER 301
Cdd:COG1322 83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 302 YFNGEDEAEREAALSEHIASLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPT 381
Cdd:COG1322 162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 382 TLLVALRTITNLWRYEHQSQNAQRIADRAAKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSegrGNLIGQIEGFRA 461
Cdd:COG1322 242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
|
330 340
....*....|....*....|....
gi 505189201 462 LGVEVKRPINPLLAQQAGAQHDEA 485
Cdd:COG1322 319 LGAEEKKELPELLEEAREEAEDEE 342
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
171-464 |
2.25e-132 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 385.31 E-value: 2.25e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 171 QSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKgDNKTQGNWGEVVLSRVLE 250
Cdd:pfam02646 1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 251 ASGLREGHEYETQVNVRvDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYERYFNGEDEAEREAALSEHIASLRGHIRMLG 330
Cdd:pfam02646 80 QSGLREGCDYETQVSLT-DEEGRLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 331 RKDYQQLPglrSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIADRA 410
Cdd:pfam02646 159 SKDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 505189201 411 AKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSegrGNLIGQIEGFRALGV 464
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
24-214 |
1.70e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 24 SLRVQQTHAQHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLNHWRNECELLNQE 103
Cdd:TIGR00618 182 ALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 104 L---RAQREVNSAQEAELREVTIRLEETRMAAE-----------EKQRLLINseQRLTTQFENLANRIFEHSGRKVDEQN 169
Cdd:TIGR00618 262 LkqlRARIEELRAQEAVLEETQERINRARKAAPlaahikavtqiEQQAQRIH--TELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 505189201 170 KQSLDRLLLPLREQLDGFRRQ--VQDSFGQEARERHTLTHEIRNLQQ 214
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAheVATSIREISCQQHTLTQHIHTLQQ 386
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
1-506 |
0e+00 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 716.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 1 MDTS-LIYGIGGVAiGMLLGWLIASLRvqqtHAQHETELRLleqalqqaqqetaarqetlqrheqqsrqselELRNLHSQ 79
Cdd:PRK10361 1 MDFSiMVYAVIALV-GVAIGWLFASYQ----HAQQKAEQLA-------------------------------EREEMVAE 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 80 LAAGHEKLQQLNHWRNECELLNQELRAQREVNSAQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRIFE 159
Cdd:PRK10361 45 LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 160 HSGRKVDEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKGDNKTQGN 239
Cdd:PRK10361 125 HSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 240 WGEVVLSRVLEASGLREGHEYETQVNVRVDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYERYFNGEDEAEREAALSEHI 319
Cdd:PRK10361 205 WGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 320 ASLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPTTLLVALRTITNLWRYEHQ 399
Cdd:PRK10361 285 ASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQ 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 400 SQNAQRIADRAAKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSEGRGNLIGQIEGFRALGVEVKRPINPLLAQQAG 479
Cdd:PRK10361 365 SRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAV 444
|
490 500
....*....|....*....|....*...
gi 505189201 480 AQHDE-AEEANDDDVAALPQTNDDDDTA 506
Cdd:PRK10361 445 SQDEEyRLRSVPEQPNDEAYQRDDEYNQ 472
|
|
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
142-485 |
2.72e-153 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 440.76 E-value: 2.72e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 142 SEQRLTTQFENLANRIFEHSGRKVDEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAR 221
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 222 EAINLTKALKgDNKTQGNWGEVVLSRVLEASGLREGHEYETQVNVRVDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYER 301
Cdd:COG1322 83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 302 YFNGEDEAEREAALSEHIASLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPT 381
Cdd:COG1322 162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 382 TLLVALRTITNLWRYEHQSQNAQRIADRAAKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSegrGNLIGQIEGFRA 461
Cdd:COG1322 242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
|
330 340
....*....|....*....|....
gi 505189201 462 LGVEVKRPINPLLAQQAGAQHDEA 485
Cdd:COG1322 319 LGAEEKKELPELLEEAREEAEDEE 342
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
171-464 |
2.25e-132 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 385.31 E-value: 2.25e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 171 QSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKgDNKTQGNWGEVVLSRVLE 250
Cdd:pfam02646 1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 251 ASGLREGHEYETQVNVRvDHQSRMQPDVIVRLPQGKDVVIDAKMSLIAYERYFNGEDEAEREAALSEHIASLRGHIRMLG 330
Cdd:pfam02646 80 QSGLREGCDYETQVSLT-DEEGRLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 331 RKDYQQLPglrSLDYVLMFIPVEPAFLLAIDREPELISEALKHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIADRA 410
Cdd:pfam02646 159 SKDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 505189201 411 AKLYDKMRLFVDDMSALGQSLDKAQGSYRQAMNKLSegrGNLIGQIEGFRALGV 464
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
28-237 |
8.27e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 8.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 28 QQTHAQHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLnhwRNECELLNQELRAQ 107
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL---EERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 108 REVNSAQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRIFEHSGRKVDEQNKQsldRLLLPLREQLDGF 187
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL---RAAAELAAQLEEL 405
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505189201 188 RRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKGDNKTQ 237
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
28-326 |
1.23e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 28 QQTHAQHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAaghEKLQQLNHWRNECELLNQELRAQ 107
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE---ELEEELAELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 108 REVNSAQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRIFEHSGRKVDEQNKQSLDRLLLPLREQLDGF 187
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 188 RRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREAINLTKALKGDNKTQGNWGEVVLSRVLEASGLREghEYETQVNVR 267
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA--RLLLLLEAE 500
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 505189201 268 VDHQSRMQPDVIVRLPQGKDVVIDAKMSLIayeryfngEDEAEREAALSEHIASLRGHI 326
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLI--------GVEAAYEAALEAALAAALQNI 551
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-221 |
2.63e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 33 QHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLNHWRNECELLNQELRAQREVNS 112
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 113 AQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRifehsgRKVDEQNKQSLDRLLLPLREQLDGFRRQVQ 192
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE------LAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180
....*....|....*....|....*....
gi 505189201 193 DSFGQEARERHTLTHEIRNLQQLNAQMAR 221
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLER 418
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1-202 |
1.05e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 1 MDTSLIYGIGGVAIGMLLGWLIASLRVQQTHAQHETELRLLEqalqqaqqetaarqetlqRHEQQSRQSELELRNLHSQL 80
Cdd:PRK12705 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQRLAKEAERILQEA------------------QKEAEEKLEAALLEAKELLL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 81 AAGHEKLQQLNHWRNECELLNQELRAQREVNSAQEAELREVTIRLeetrmaaEEKQRLLINSEQRLTTQFENLANRIFEH 160
Cdd:PRK12705 63 RERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQL-------EEREKALSARELELEELEKQLDNELYRV 135
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 505189201 161 SGRKVDEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARER 202
Cdd:PRK12705 136 AGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
24-214 |
1.70e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 24 SLRVQQTHAQHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLNHWRNECELLNQE 103
Cdd:TIGR00618 182 ALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 104 L---RAQREVNSAQEAELREVTIRLEETRMAAE-----------EKQRLLINseQRLTTQFENLANRIFEHSGRKVDEQN 169
Cdd:TIGR00618 262 LkqlRARIEELRAQEAVLEETQERINRARKAAPlaahikavtqiEQQAQRIH--TELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 505189201 170 KQSLDRLLLPLREQLDGFRRQ--VQDSFGQEARERHTLTHEIRNLQQ 214
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAheVATSIREISCQQHTLTQHIHTLQQ 386
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-229 |
2.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 26 RVQQTHAQHETELRLLEQALQQAQQETAARQETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLNHWRNECELLNQELR 105
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 106 AQREVNSAQEAELREVTIRLEETRMAAEEKQRLLINSEQRLTTQFENLANRIFEHSGRKVDEQNKQSldrlllPLREQLD 185
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE------SLERRIA 834
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 505189201 186 GFRRQVQDSFGQEARERHT---LTHEIRNLQQLNAQMAREAINLTKA 229
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNE 881
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
57-214 |
4.21e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189201 57 ETLQRHEQQSRQSELELRNLHSQLAAGHEKLQQLNHWRNECELLNQELRAQREVNSAQEAELREVTIRLEETRMAAEEKQ 136
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARI 594
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189201 137 RLLINSEQRLTTQFENLaNRIFEHSGRKVDeqNKQSLDRLLLPLREQLdgfrRQVQDSFGQEARERHTLTHEIRNLQQ 214
Cdd:COG3096 595 KELAARAPAWLAAQDAL-ERLREQSGEALA--DSQEVTAAMQQLLERE----REATVERDELAARKQALESQIERLSQ 665
|
|
| |
