|
Name |
Accession |
Description |
Interval |
E-value |
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
2-256 |
0e+00 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 508.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM 81
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIENLLVAQHQHLKSGVFAGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
250
....*....|....*
gi 505189189 242 IRNNPDVIRAYLGEE 256
Cdd:PRK11300 241 IRNNPDVIKAYLGEA 255
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
4-256 |
2.06e-140 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 394.41 E-value: 2.06e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:COG0411 2 DPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTFQHVRLFREMTVIENLLVAQHQHLKSGVFAGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRL 163
Cdd:COG0411 82 ARTFQNPRLFPELTVLENVLVAAHARLGRGLLAALLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:COG0411 162 EIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVR 241
|
250
....*....|...
gi 505189189 244 NNPDVIRAYLGEE 256
Cdd:COG0411 242 ADPRVIEAYLGEE 254
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
7-248 |
1.77e-113 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 325.16 E-value: 1.77e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAQHQHLKSGVFAGllktpAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLA-----RARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG-ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
..
gi 505189189 247 DV 248
Cdd:cd03219 235 RV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-255 |
6.35e-78 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 235.78 E-value: 6.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:COG4674 9 PILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGIG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLLVAQHQHlkSGVFAGLlktpaFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:COG4674 89 RKFQKPTVFEELTVFENLELALKGD--RGVFASL-----FARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:COG4674 162 IGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKH--SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQA 239
|
250
....*....|.
gi 505189189 245 NPDVIRAYLGE 255
Cdd:COG4674 240 DPRVIEVYLGR 250
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-254 |
4.16e-63 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 197.51 E-value: 4.16e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:COG0410 2 PMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtfqHV----RLFREMTVIENLLVAQHQHLKSGVFAGLlktpafrraeaealaraaewLERVG-----LLSMANRSAGNL 155
Cdd:COG0410 82 ----YVpegrRIFPSLTVEENLLLGAYARRDRAEVRAD--------------------LERVYelfprLKERRRQRAGTL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:COG0410 138 SGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVL 216
|
250
....*....|....*....
gi 505189189 236 QGTPAEIRNNPDVIRAYLG 254
Cdd:COG0410 217 EGTAAELLADPEVREAYLG 235
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
7-256 |
1.03e-58 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 186.04 E-value: 1.03e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVrt 86
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLvaqhqhlksgVFAGLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:COG1131 79 PQEPALYPDLTVRENLR----------FFARLYGLPR-----KEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG1131 144 LALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
250
....*....|..
gi 505189189 247 --DVIRAYLGEE 256
Cdd:COG1131 223 leDVFLELTGEE 234
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
7-254 |
1.19e-58 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 185.82 E-value: 1.19e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAQHQHLKSgvfagllktpafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLS---------------KKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
....*...
gi 505189189 247 DVIRAYLG 254
Cdd:cd03218 225 LVRKVYLG 232
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
7-245 |
1.59e-58 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 185.33 E-value: 1.59e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAQHQHLKSGVFAGllktpafrraeaealaraaewLERV-----GLLSMANRSAGNLAYGQQR 161
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKAR---------------------LERVyelfpRLKERRKQLAGTLSGGEQQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03224 140 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
....
gi 505189189 242 IRNN 245
Cdd:cd03224 219 LLAD 222
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
4-253 |
6.03e-58 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 184.41 E-value: 6.03e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI----A 79
Cdd:COG1127 3 EPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELyelrR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RMGVVrtFQHVRLFREMTVIENLLVAQHQHLKsgvfagllKTPAfrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:COG1127 83 RIGML--FQGGALFDSLTVFENVAFPLREHTD--------LSEA------EIRELVLEKLELVGLPGAADKMPSELSGGM 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTP 239
Cdd:COG1127 147 RKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTP 226
|
250
....*....|....*
gi 505189189 240 AEIRNNPD-VIRAYL 253
Cdd:COG1127 227 EELLASDDpWVRQFL 241
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
5-256 |
2.55e-57 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 182.54 E-value: 2.55e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLL-VAQHQHLKSgvfagllktpafrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRL 163
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILaVLELRKLSK----------------KEREERLEELLEEFGITHLRKSKAYSLSGGERRRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKER-GIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEIL 224
|
250
....*....|...
gi 505189189 244 NNPDVIRAYLGEE 256
Cdd:COG1137 225 NNPLVRKVYLGED 237
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
7-256 |
1.23e-56 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 180.93 E-value: 1.23e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLL-VAQHQHLKSgvfagllktpafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMaVLEIRKDLD---------------RAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:TIGR04406 147 ARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKERG-IGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVAN 225
|
250
....*....|.
gi 505189189 246 PDVIRAYLGEE 256
Cdd:TIGR04406 226 EKVRRVYLGEQ 236
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
7-248 |
2.55e-52 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 169.60 E-value: 2.55e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAG----QAIARMG 82
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaelyRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVrtFQHVRLFREMTVIENLLVAQHQHLKsgvfagllktpafrRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:cd03261 81 ML--FQSGALFDSLTVFENVAFPLREHTR--------------LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
....*...
gi 505189189 243 RN--NPDV 248
Cdd:cd03261 225 RAsdDPLV 232
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-245 |
2.38e-48 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 160.02 E-value: 2.38e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVr 85
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVL- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 tFQHVRLFREMTVIENLLvaqhqhlksgVFAgllktPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:COG4555 80 -PDERGLYDRLTVRENIR----------YFA-----ELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVAL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVsVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:COG4555 144 ARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKT-VLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-252 |
4.31e-48 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 159.10 E-value: 4.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLeGLAGQAIA- 79
Cdd:COG1121 1 MMMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP-RRARRRIGy 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 ---RMGVVRTFQhvrlfreMTVIEnlLVAqhqhlkSGVFAgllKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLA 156
Cdd:COG1121 80 vpqRAEVDWDFP-------ITVRD--VVL------MGRYG---RRGLFRRPSRADREAVDEALERVGLEDLADRPIGELS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNqGTPLAQ 236
Cdd:COG1121 142 GGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELR-REGKTILVVTHDLGAVREYFDRVLLLN-RGLVAH 219
|
250
....*....|....*.
gi 505189189 237 GTPAEIRNNPDVIRAY 252
Cdd:COG1121 220 GPPEEVLTPENLSRAY 235
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
4-246 |
1.53e-46 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 158.34 E-value: 1.53e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqAIAR-MG 82
Cdd:COG3842 3 MPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLP--PEKRnVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVrtFQHVRLFREMTVIENllVAqhqhlksgvFaGL--LKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:COG3842 81 MV--FQDYALFPHLTVAEN--VA---------F-GLrmRGVPK-----AEIRARVAELLELVGLEGLADRYPHQLSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:COG3842 142 QRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPE 221
|
....*.
gi 505189189 241 EIRNNP 246
Cdd:COG3842 222 EIYERP 227
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
7-231 |
1.77e-46 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 152.55 E-value: 1.77e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVrt 86
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLlvaqhqhlksgvfagllktpafrraeaealaraaewlervgLLSManrsagnlayGQQRRLEIA 166
Cdd:cd03230 79 PEEPSLYENLTVRENL-----------------------------------------KLSG----------GMKQRLALA 107
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGK-TILLSSHILEEAERLCDRVAILNNG 171
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
7-251 |
1.91e-46 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 154.41 E-value: 1.91e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GVV 84
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVR--LFrEMTVIENllVAqhqhlksgvFaGL--LKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:COG1122 81 --FQNPDdqLF-APTVEED--VA---------F-GPenLGLPR-----EEIRERVEEALELVGLEHLADRPPHELSGGQK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:COG1122 141 QRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGK-TVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
250
....*....|.
gi 505189189 241 EIRNNPDVIRA 251
Cdd:COG1122 220 EVFSDYELLEE 230
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-246 |
5.85e-45 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 157.76 E-value: 5.85e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF-----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI 78
Cdd:COG1123 258 EPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 A----RMGVVrtFQHVR--LFREMTVIENLLVAQHQHlksgvfaGLLKTPAfrraeaeALARAAEWLERVGL-LSMANRS 151
Cdd:COG1123 338 RelrrRVQMV--FQDPYssLNPRMTVGDIIAEPLRLH-------GLLSRAE-------RRERVAELLERVGLpPDLADRY 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:COG1123 402 PHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDG 481
|
250
....*....|....*
gi 505189189 232 TPLAQGTPAEIRNNP 246
Cdd:COG1123 482 RIVEDGPTEEVFANP 496
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
7-242 |
4.80e-44 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 148.87 E-value: 4.80e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFG-GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI----ARM 81
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqlrRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVrtFQHVRLFREMTVIENLLV---AQHQHLKS--GVFAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGNLA 156
Cdd:cd03256 81 GMI--FQQFNLIERLSVLENVLSgrlGRRSTWRSlfGLFPKEEKQRALAA------------LERVGLLDKAYQRADQLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226
|
....*.
gi 505189189 237 GTPAEI 242
Cdd:cd03256 227 GPPAEL 232
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
7-243 |
7.27e-44 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 147.65 E-value: 7.27e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGL--LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:cd03263 1 LQIRNLTKTYKKGtkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVRLFREMTVIENL-LVAQhqhLKsgvfaGLLKTPAFRRAEAEalaraaewLERVGLLSMANRSAGNLAYGQQRRL 163
Cdd:cd03263 81 --PQFDALFDELTVREHLrFYAR---LK-----GLPKSEIKEEVELL--------LRVLGLTDKANKRARTLSGGMKRKL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
7-243 |
3.35e-43 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 145.98 E-value: 3.35e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVrt 86
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVaqhqhlksgvFAGLLKTPafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03265 79 FQDLSVDDELTGWENLYI----------HARLYGVP-----GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
7-232 |
7.60e-43 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 143.48 E-value: 7.60e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA---RMGV 83
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPlrrRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VrtFQHVRLFREMTVIENLlvaqhQHLKSGvfagllktpafrraeaealaraaewlervgllsmanrsagnlayGQQRRL 163
Cdd:cd03229 81 V--FQDFALFPHLTVLENI-----ALGLSG--------------------------------------------GQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
5-256 |
1.16e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 145.20 E-value: 1.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI----A 79
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALrrlrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RMGVVrtFQHVRLFREMTVIENLLV---AQHQHLKS--GVFAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGN 154
Cdd:COG3638 81 RIGMI--FQQFNLVPRLSVLTNVLAgrlGRTSTWRSllGLFPPEDRERALEA------------LERVGLADKAYQRADQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPL 234
Cdd:COG3638 147 LSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
|
250 260
....*....|....*....|..
gi 505189189 235 AQGTPAEIrnNPDVIRAYLGEE 256
Cdd:COG3638 227 FDGPPAEL--TDAVLREIYGGE 246
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-237 |
1.26e-42 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 144.20 E-value: 1.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLeglAGQAIARMGVVRT 86
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV---TGVPPERRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAqhqhLKsgvfagLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03259 78 FQDYALFPHLTVAENIAFG----LK------LRGVPK-----AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
6-242 |
1.87e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 144.80 E-value: 1.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVV 84
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARrIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVRLFREMTVIENLLVAQHQHLKsgvfagllktpAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:COG1120 81 --PQEPPAPFGLTVRELVALGRYPHLG-----------LFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:COG1120 148 IARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-231 |
6.69e-42 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 149.41 E-value: 6.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEgLAG--QAIARm 81
Cdd:COG3845 3 PPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVR-IRSprDAIAL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIENLLVaqhqhlksgvfaGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVL------------GLEPTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:COG3845 149 RVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGK-SIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
8-232 |
6.12e-41 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 139.91 E-value: 6.12e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGL--LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GVV 84
Cdd:cd03225 1 ELKNLSFSYPDGarPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVR--LFREmTVIE-------NLLVAQHQhlksgvfagllktpafrraeaeALARAAEWLERVGLLSMANRSAGNL 155
Cdd:cd03225 81 --FQNPDdqFFGP-TVEEevafgleNLGLPEEE----------------------IEERVEEALELVGLEGLRDRSPFTL 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:cd03225 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK-TIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-256 |
1.53e-40 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 145.55 E-value: 1.53e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTFQHVRLFREMTVIENLlvaqhqhlksgvFAGLLKTPAFRRAEAEALARAAEWLERVGL-LSmANRSAGNLAYGQQRR 162
Cdd:COG1129 82 AIIHQELNLVPNLSVAENI------------FLGREPRRGGLIDWRAMRRRARELLARLGLdID-PDTPVGDLSVAQQQL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:COG1129 149 VEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
250
....*....|....
gi 505189189 243 rNNPDVIRAYLGEE 256
Cdd:COG1129 228 -TEDELVRLMVGRE 240
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-254 |
6.79e-40 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 137.82 E-value: 6.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLeGLAGQAIA----RM 81
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDSKKDINklrrKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVrtFQHVRLFREMTVIENLLVAQHQHLKSGvfagllKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:COG1126 80 GMV--FQQFNLFPHLTVLENVTLAPIKVKKMS------KAEA--------EERAMELLERVGLADKADAYPAQLSGGQQQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDE-LDhLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:COG1126 144 RVAIARALAMEPKVMLFDEPTSALDPELVGEvLD-VMRDLAKEG-MTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPE 221
|
250
....*....|....*.
gi 505189189 241 EIRNNP--DVIRAYLG 254
Cdd:COG1126 222 EFFENPqhERTRAFLS 237
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
8-237 |
7.90e-40 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 136.89 E-value: 7.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEglagQAIARMGVVRTF 87
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QHV-RLFReMTVIEnlLVAqhqhlkSGVFAgllKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03235 77 RSIdRDFP-ISVRD--VVL------MGLYG---HKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNqGTPLAQG 237
Cdd:cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM-TILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-246 |
9.62e-40 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 140.67 E-value: 9.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSvqplLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL-----------RDRh 69
Cdd:COG1118 1 MS----IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLngrdlftnlppRER- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 70 leglagqaiaRMGVVrtFQHVRLFREMTVIENllVAqhqhlksgvfAGLLKTPAFRRAEAEALARaaeWLERVGLLSMAN 149
Cdd:COG1118 76 ----------RVGFV--FQHYALFPHMTVAEN--IA----------FGLRVRPPSKAEIRARVEE---LLELVQLEGLAD 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVN 229
Cdd:COG1118 129 RYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMN 208
|
250
....*....|....*..
gi 505189189 230 QGTPLAQGTPAEIRNNP 246
Cdd:COG1118 209 QGRIEQVGTPDEVYDRP 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
7-231 |
1.02e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 136.85 E-value: 1.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-- 80
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 ---MGVVrtFQHVRLFREMTVIENLLVAQHqhlksgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAY 157
Cdd:cd03255 81 rrhIGFV--FQSFNLLPDLTALENVELPLL-------LAGVPKKER--------RERAEELLERVGLGDRLNHYPSELSG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 158 GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVmGISDRIYVVNQG 231
Cdd:cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDG 216
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
7-246 |
1.16e-39 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 136.98 E-value: 1.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqaIARMGVVRT 86
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP---PHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAqhqhLKsgvfagLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03300 78 FQNYALFPHLTVFENIAFG----LR------LKKLPK-----AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDeldHLIVELRDRHK---VSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:cd03300 143 RALVNEPKVLLLDEPLGALDLKLRK---DMQLELKRLQKelgITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219
|
...
gi 505189189 244 NNP 246
Cdd:cd03300 220 EEP 222
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
7-246 |
1.46e-39 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 137.09 E-value: 1.46e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQaiaRMGVVRT 86
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ---ERNVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENllVAqhqhlksgvFAGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03296 80 FQHYALFRHMTVFDN--VA---------FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
6-250 |
1.92e-39 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 137.04 E-value: 1.92e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFG-GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI----AR 80
Cdd:TIGR02315 1 MLEVENLSKVYPnGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLrklrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVrtFQHVRLFREMTVIENLL---VAQHQHLKS--GVFAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGNL 155
Cdd:TIGR02315 81 IGMI--FQHYNLIERLTVLENVLhgrLGYKPTWRSllGRFSEEDKERALSA------------LERVGLADKAYQRADQL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226
|
250
....*....|....*
gi 505189189 236 QGTPAEIrnNPDVIR 250
Cdd:TIGR02315 227 DGAPSEL--DDEVLR 239
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-244 |
2.78e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 137.93 E-value: 2.78e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM----G 82
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGYLpeerG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 vvrtfqhvrLFREMTVIENLL-VAQhqhLKsgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:COG4152 82 ---------LYPKMKVGEQLVyLAR---LK-----GLSKAEA--------KRRADEWLERLGLGDRANKKVEELSKGNQQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:COG4152 137 KVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDE 215
|
...
gi 505189189 242 IRN 244
Cdd:COG4152 216 IRR 218
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
8-237 |
3.65e-39 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 134.10 E-value: 3.65e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVVRT 86
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARkIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 fqhvrlfremtvienllvaqhqhlksgvfagllktpafrraeaealaraaeWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03214 81 ---------------------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLA 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-227 |
4.00e-39 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 136.37 E-value: 4.00e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQ-PLLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAg 75
Cdd:COG1116 1 MSAAaPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 qaiARMGVVrtFQHVRLFREMTVIENLLVAqhqhLKsgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNL 155
Cdd:COG1116 80 ---PDRGVV--FQEPALLPWLTVLDNVALG----LE---LRGVPKAER--------RERARELLELVGLAGFEDAYPHQL 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMK--LVMgiSDRIYV 227
Cdd:COG1116 140 SGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDeaVFL--ADRVVV 211
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
4-247 |
6.02e-39 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 138.63 E-value: 6.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAiaR-MG 82
Cdd:TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK--RdYG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVrtFQHVRLFREMTVIENllVAQHQHLKSGVFAGLLKTpafrraeaealarAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:TIGR03265 80 IV--FQSYALFPNLTVADN--IAYGLKNRGMGRAEVAER-------------VAELLDLVGLPGSERKYPGQLSGGQQQR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:TIGR03265 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
....*
gi 505189189 243 RNNPD 247
Cdd:TIGR03265 223 YRHPA 227
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
7-253 |
7.18e-39 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 134.96 E-value: 7.18e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLV------AQHQHLKSGVFAGLlktPAfrraeaealaraaewlervgLLSMANRSAGNLAYGQQ 160
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTglaalpRRSRKIPDEIYELF---PV--------------------LKEMLGRRGGDLSGGQQ 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:TIGR03410 138 QQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGD 217
|
250
....*....|...
gi 505189189 241 EIrnNPDVIRAYL 253
Cdd:TIGR03410 218 EL--DEDKVRRYL 228
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-256 |
7.20e-39 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 135.41 E-value: 7.20e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVR 85
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQHVRLFREMTVIENLL-VAQHQHlksgvfagllktpafRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMaVLQIRD---------------DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
250
....*....|..
gi 505189189 245 NPDVIRAYLGEE 256
Cdd:PRK10895 227 DEHVKRVYLGED 238
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
7-227 |
1.93e-38 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 133.75 E-value: 1.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqaiARMG 82
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG----PDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVrtFQHVRLFREMTVIENLLVAqhqhLKsgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:cd03293 77 YV--FQQDALLPWLTVLDNVALG----LE---LQGVPKAEA--------RERAEELLELVGLSGFENAYPHQLSGGMRQR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYV 227
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
4-231 |
4.02e-38 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 132.86 E-value: 4.02e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFG----GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA 79
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RM-----GVVrtFQHVRLFREMTVIENLLVAQhqhlksgVFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGN 154
Cdd:COG1136 82 RLrrrhiGFV--FQFFNLLPELTALENVALPL-------LLAGVSRKER--------RERARELLERVGLGDRLDHRPSQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLvMGISDRIYVVNQG 231
Cdd:COG1136 145 LSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPEL-AARADRVIRLRDG 220
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
22-183 |
5.74e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 130.08 E-value: 5.74e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGVVrtFQHVRLFREMTVIE 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYV--FQDPQLFPRLTVRE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLLVAQHqhlksgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGN----LAYGQQRRLEIARCMVTRPELL 176
Cdd:pfam00005 79 NLRLGLL-------LKGLSKREK--------DARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLL 143
|
....*..
gi 505189189 177 MLDEPAA 183
Cdd:pfam00005 144 LLDEPTA 150
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-214 |
2.76e-37 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 130.29 E-value: 2.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVRLFREMTVIENLLVAQHQHlksGVFAGLLKTPAfrraeaealaraaeWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:COG4133 81 --GHADGLKPELTVRENLRFWAALY---GLRADREAIDE--------------ALEAVGLAGLADLPVRQLSAGQKRRVA 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHD 214
Cdd:COG4133 142 LARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLAR-GGAVLLTTHQ 190
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
7-237 |
9.86e-36 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 126.24 E-value: 9.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 fqhvrLFREMTVIENLLvaqhqHLKSgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03269 81 -----LYPKMKVIDQLV-----YLAQ--LKGLKKEEA--------RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK-TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-251 |
2.54e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 131.56 E-value: 2.54e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF--GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSG---GTIKLRDRHLEGLAGQAI 78
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 AR-MGVVrtFQH-------VRLFREMT-VIENLLVAQHQHLKsgvfagllktpafrraeaealaRAAEWLERVGLLSMAN 149
Cdd:COG1123 82 GRrIGMV--FQDpmtqlnpVTVGDQIAeALENLGLSRAEARA----------------------RVLELLEAVGLERRLD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVN 229
Cdd:COG1123 138 RYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMD 217
|
250 260
....*....|....*....|..
gi 505189189 230 QGTPLAQGTPAEIRNNPDVIRA 251
Cdd:COG1123 218 DGRIVEDGPPEEILAAPQALAA 239
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
7-237 |
3.53e-35 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 124.64 E-value: 3.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGqAIARMGVVRT 86
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-ALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQhvRLFREMTVIENLLVAQHQHLKSgvfagllktpafrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03268 80 AP--GFYPNLTARENLRLLARLLGIR-------------------KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI-TVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-256 |
1.39e-34 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 129.52 E-value: 1.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 3 VQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMG 82
Cdd:PRK09700 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVRTFQHVRLFREMTVIENLLVAQHQHLKsgVFAGLLKTPAFRRAEAEALaraaewLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKK--VCGVNIIDWREMRVRAAMM------LLRVGLKVDLDEKVANLSISHKQM 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
250
....*....|....
gi 505189189 243 RNNpDVIRAYLGEE 256
Cdd:PRK09700 233 SND-DIVRLMVGRE 245
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
7-255 |
1.64e-34 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 123.71 E-value: 1.64e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAvnNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDrhlEGLAGQAIARMGVVRT 86
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNG---QDLTALPPAERPVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIEN----------LLVAQHQHLKSGvfagllktpafrraeaealaraaewLERVGLLSMANRSAGNLA 156
Cdd:COG3840 77 FQENNLFPHLTVAQNiglglrpglkLTAEQRAQVEQA-------------------------LERVGLAGLLDRLPGQLS 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:COG3840 132 GGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAAD 211
|
250 260
....*....|....*....|.
gi 505189189 237 GTPAEI--RNNPDVIRAYLGE 255
Cdd:COG3840 212 GPTAALldGEPPPALAAYLGI 232
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
7-232 |
1.91e-34 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 121.38 E-value: 1.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQhvrlfremtvienllvaqhqhlksgvfagllktpafrraeaealaraaewlervgllsmanrsagnLAYGQQRRLEIA 166
Cdd:cd03216 81 YQ------------------------------------------------------------------LSVGERQMVEIA 94
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-252 |
2.47e-34 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 124.07 E-value: 2.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GVV 84
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRrAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RtfQHVRL---FremTVIEnllvaqhqhlksgvFAGLLKTPAFRRAEAEALARAAEwLERVGLLSMANRSAGNLAYGQQR 161
Cdd:COG4559 81 P--QHSSLafpF---TVEE--------------VVALGRAPHGSSAAQDRQIVREA-LALVGLAHLAGRSYQTLSGGEQQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMV-------TRPELLMLDEPAAGLNPKEtdelDHLIVEL-RD--RHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:COG4559 141 RVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAH----QHAVLRLaRQlaRRGGGVVAVLHDLNLAAQYADRILLLHQG 216
|
250 260
....*....|....*....|.
gi 505189189 232 TPLAQGTPAEIRNNPDVIRAY 252
Cdd:COG4559 217 RLVAQGTPEEVLTDELLERVY 237
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
21-252 |
3.19e-34 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 124.10 E-value: 3.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI----ARMGVVrtFQ---HvRLF 93
Cdd:TIGR04521 20 ALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLkdlrKKVGLV--FQfpeH-QLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 94 rEMTVIE-------NLLVAQhQHLKSGVFAgllktpafrraeaealaraaeWLERVGL-LSMANRSAGNLAYGQQRRLEI 165
Cdd:TIGR04521 97 -EETVYKdiafgpkNLGLSE-EEAEERVKE---------------------ALELVGLdEEYLERSPFELSGGQMRRVAI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:TIGR04521 154 AGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSD 233
|
....*..
gi 505189189 246 PDVIRAY 252
Cdd:TIGR04521 234 VDELEKI 240
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-246 |
3.35e-34 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 123.37 E-value: 3.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFG----GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR- 80
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVrtFQHVR--LFREMTVIEnllvaqhqhlksgvfagLLKTPAFRRAEAEALARAAEWLERVGL-LSMANRSAGNLAY 157
Cdd:COG1124 81 VQMV--FQDPYasLHPRHTVDR-----------------ILAEPLRIHGLPDREERIAELLEQVGLpPSFLDRYPHQLSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 158 GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:COG1124 142 GQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEEL 221
|
....*....
gi 505189189 238 TPAEIRNNP 246
Cdd:COG1124 222 TVADLLAGP 230
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
7-231 |
3.75e-34 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 122.25 E-value: 3.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGlAGQAI----ARMG 82
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD-DKKNInelrQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVrtFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:cd03262 80 MV--FQQFNLFPHLTVLENITLAPIKVK------GMSKAEA--------EERALELLEKVGLADKADAYPAQLSGGQQQR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-252 |
6.23e-34 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 122.89 E-value: 6.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRP-SGGTIKLRDRHLEGLAGQAI-ARM 81
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPtYGNDVRLFGERRGGEDVWELrKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIENLLvaqhqhlkSGVFA--GLLKTPafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:COG1119 81 GLVSPALQLRFPRDETVLDVVL--------SGFFDsiGLYREP-----TDEQRERARELLELLGLAHLADRPFGTLSQGE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMK-LVMGISDRIyVVNQGTPLAQGT 238
Cdd:COG1119 148 QRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEeIPPGITHVL-LLKDGRVVAAGP 226
|
250
....*....|....
gi 505189189 239 PAEIRNNPDVIRAY 252
Cdd:COG1119 227 KEEVLTSENLSEAF 240
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
6-246 |
7.80e-34 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 121.92 E-value: 7.80e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAG----QA 77
Cdd:cd03258 1 MIELKNVSKVFGDtggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkelrKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 78 IARMGVVrtFQHVRLFREMTVIENLLVAqhqhLKsgvFAGLLKTpafrraeaEALARAAEWLERVGLLSMANRSAGNLAY 157
Cdd:cd03258 81 RRRIGMI--FQHFNLLSSRTVFENVALP----LE---IAGVPKA--------EIEERVLELLELVGLEDKADAYPAQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 158 GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223
|
....*....
gi 505189189 238 TPAEIRNNP 246
Cdd:cd03258 224 TVEEVFANP 232
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
2-246 |
1.08e-33 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 125.33 E-value: 1.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLA--GQAIA 79
Cdd:PRK11607 15 ALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPpyQRPIN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RMgvvrtFQHVRLFREMTVIENLLVAQHQHlksgvfagllKTPafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:PRK11607 95 MM-----FQSYALFPHMTVEQNIAFGLKQD----------KLP-----KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTP 239
Cdd:PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234
|
....*..
gi 505189189 240 AEIRNNP 246
Cdd:PRK11607 235 EEIYEHP 241
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-242 |
2.95e-33 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 120.36 E-value: 2.95e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFY-----RPSGGTIKLRDRHLEGLAGQAIA-- 79
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 -RMGVVrtFQHVRLFReMTVIENLLVAQHQHlksgvfaGLLKTPAFRRAEAEAlaraaewLERVGLLSMANR--SAGNLA 156
Cdd:cd03260 81 rRVGMV--FQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEA-------LRKAALWDEVKDrlHALGLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEF 221
|
....*.
gi 505189189 237 GTPAEI 242
Cdd:cd03260 222 GPTEQI 227
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-231 |
4.82e-33 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 119.92 E-value: 4.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM 81
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GvvRTFQHVrlFRE--------MTVIENLLVAQHQHLKsgvfaglLKTPAFRRAEAEALaraaewLERVGLLS-MANRSA 152
Cdd:cd03257 81 R--KEIQMV--FQDpmsslnprMTIGEQIAEPLRIHGK-------LSKKEARKEAVLLL------LVGVGLPEeVLNRYP 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
7-231 |
2.13e-32 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 117.85 E-value: 2.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA----RM 81
Cdd:COG2884 2 IRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrrRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVrtFQHVRLFREMTVIENLLVA------QHQHLKSGVFAgllktpafrraeaealaraaeWLERVGLLSMANRSAGNL 155
Cdd:COG2884 82 GVV--FQDFRLLPDRTVYENVALPlrvtgkSRKEIRRRVRE---------------------VLDLVGLSDKAKALPHEL 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:COG2884 139 SGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEIN-RRGTTVLIATHDLELVDRMPKRVLELEDG 213
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
7-246 |
5.65e-32 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 120.18 E-value: 5.65e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqAIAR-MGVVr 85
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLP--PKDRnIAMV- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 tFQHVRLFREMTVIENLLVAqhqhLKsgvfagLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:COG3839 81 -FQSYALYPHMTVYENIAFP----LK------LRKVPK-----AEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:COG3839 145 GRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDR 224
|
.
gi 505189189 246 P 246
Cdd:COG3839 225 P 225
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
4-253 |
6.25e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 122.95 E-value: 6.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF--GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-AR 80
Cdd:COG4987 331 GPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLrRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVrtFQHVRLFReMTVIENLLVAQHQhlksgvfAG---LLKTpafrraeaealaraaewLERVGLLSMANRSAGNLAY 157
Cdd:COG4987 411 IAVV--PQRPHLFD-TTLRENLRLARPD-------ATdeeLWAA-----------------LERVGLGDWLAALPDGLDT 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 158 -----------GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDE-LDHLIVELRDRhkvSVLLIEHDMkLVMGISDRI 225
Cdd:COG4987 464 wlgeggrrlsgGERRRLALARALLRDAPILLLDEPTEGLDAATEQAlLADLLEALAGR---TVLLITHRL-AGLERMDRI 539
|
250 260
....*....|....*....|....*...
gi 505189189 226 YVVNQGTPLAQGTPAEIRNNPDVIRAYL 253
Cdd:COG4987 540 LVLEDGRIVEQGTHEELLAQNGRYRQLY 567
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-252 |
8.14e-32 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 118.75 E-value: 8.14e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLlQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR 80
Cdd:PRK13537 3 MSVAPI-DFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHvrLFREMTVIENLLV-AQHQHLKSGVFAGLLKTpafrraeaealaraaeWLERVGLLSMANRSAGNLAYGQ 159
Cdd:PRK13537 82 VGVVPQFDN--LDPDFTVRENLLVfGRYFGLSAAAARALVPP----------------LLEFAKLENKADAKVGELSGGM 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETdeldHLIVE----LRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQAR----HLMWErlrsLLARGK-TILLTTHFMEEAERLCDRLCVIEEGRKIA 218
|
250 260
....*....|....*....|
gi 505189189 236 QGTPAEIRNNP---DVIRAY 252
Cdd:PRK13537 219 EGAPHALIESEigcDVIEIY 238
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-232 |
1.08e-31 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 114.26 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIaRMGVVRTF 87
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QhvrlfremtvienllvaqhqhlksgvfagllktpafrraeaealaraaewlervgllsmanrsagnLAYGQQRRLEIAR 167
Cdd:cd00267 80 Q------------------------------------------------------------------LSGGQRQRVALAR 93
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 168 CMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR-TVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-256 |
1.82e-31 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 121.19 E-value: 1.82e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSG---GTIklrdrHLEG--LAGQAI 78
Cdd:PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGtyeGEI-----IFEGeeLQASNI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 A---RMGVVRTFQHVRLFREMTVIENLlvaqhqhlksgvFAGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNL 155
Cdd:PRK13549 77 RdteRAGIAIIHQELALVKELSVLENI------------FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223
|
250 260
....*....|....*....|.
gi 505189189 236 QgTPAEIRNNPDVIRAYLGEE 256
Cdd:PRK13549 224 T-RPAAGMTEDDIITMMVGRE 243
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-246 |
2.21e-31 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 118.90 E-value: 2.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQaiaR 80
Cdd:PRK09452 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE---N 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRLFREMTVIENllVAQHQHLKsgvfagllKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:PRK09452 86 RHVNTVFQSYALFPHMTVFEN--VAFGLRMQ--------KTPA-----AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
....*.
gi 505189189 241 EIRNNP 246
Cdd:PRK09452 231 EIYEEP 236
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
5-241 |
5.48e-31 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 115.25 E-value: 5.48e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GV 83
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRrAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRtfQHVRLFREMTVIEnllvaqhqhlksgVFA-GLLktpAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:PRK13548 81 LP--QHSSLSFPFTVEE-------------VVAmGRA---PHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMV------TRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:PRK13548 143 VQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222
|
....*
gi 505189189 237 GTPAE 241
Cdd:PRK13548 223 GTPAE 227
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
7-237 |
1.00e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 113.44 E-value: 1.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGeIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRt 86
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 fQHVRLFREMTVIENLlvaQHQHLKSGVFAGLLKtpafrraeaealARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03264 79 -QEFGVYPNFTVREFL---DYIAWLKGIPSKEVK------------ARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVEL-RDRhkvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELgEDR---IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-247 |
2.26e-30 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 114.09 E-value: 2.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-- 78
Cdd:PRK11831 2 QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLyt 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 ARMGVVRTFQHVRLFREMTVIENLL--VAQHQHLKsgvfAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGNLA 156
Cdd:PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAypLREHTQLP----APLLHSTVMMK------------LEAVGLRGAAKLMPSELS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225
|
250
....*....|.
gi 505189189 237 GTPAEIRNNPD 247
Cdd:PRK11831 226 GSAQALQANPD 236
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
21-249 |
2.93e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 113.99 E-value: 2.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL--EGLAGQAI-ARMGVVRTFQHVRLFREmT 97
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdKKVKLSDIrKKVGLVFQYPEYQLFEE-T 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIENL------LVAQHQHLKSGVFAGLlktpafrraeaealaraaewlERVGL--LSMANRSAGNLAYGQQRRLEIARCM 169
Cdd:PRK13637 101 IEKDIafgpinLGLSEEEIENRVKRAM---------------------NIVGLdyEDYKDKSPFELSGGQKRRVAIAGVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 170 VTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVI 249
Cdd:PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
6-256 |
3.08e-30 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 117.62 E-value: 3.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSG---GTIKLRDRHLEGLAGQAIARMG 82
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGtwdGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVRTFQHVRLFREMTVIENLLVAQHQHLKsgvfAGLLKTPAFRRAEAEAlaraaewLERVGLLSMAN-RSAGNLAYGQQR 161
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLP----GGRMAYNAMYLRAKNL-------LRELQLDADNVtRPVGDYGGGQQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQgTPAE 241
Cdd:TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMS 226
|
250
....*....|....*
gi 505189189 242 IRNNPDVIRAYLGEE 256
Cdd:TIGR02633 227 TMSEDDIITMMVGRE 241
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
4-254 |
7.60e-30 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 111.89 E-value: 7.60e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTFQHVRLFREMTVIENLLVAqhqhlksGVFAgllktpafrraeaeALARAAEWLERV-----GLLSMANRSAGNLAYG 158
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLAMG-------GFFA--------------ERDQFQERIKWVyelfpRLHERRIQRAGTMSGG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 159 QQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGT 238
Cdd:PRK11614 142 EQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
|
250
....*....|....*.
gi 505189189 239 PAEIRNNPDVIRAYLG 254
Cdd:PRK11614 221 GDALLANEAVRSAYLG 236
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
15-246 |
1.45e-29 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 111.97 E-value: 1.45e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 15 RFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI--------KLRDRHLEGLAGQaiaRMGVVrt 86
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVlidgqdiaAMSRKELRELRRK---KISMV-- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENL---LVAQHQHLKsgvfagllktpafrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQQRRL 163
Cdd:cd03294 108 FQSFALLPHRTVLENVafgLEVQGVPRA------------------EREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIR 243
Cdd:cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
...
gi 505189189 244 NNP 246
Cdd:cd03294 250 TNP 252
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
17-256 |
2.61e-29 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 113.02 E-value: 2.61e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 17 GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDrhlEGLAGQAIARMGVVR------TFQHV 90
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG---ENIMKQSPVELREVRrkkigmVFQQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 91 RLFREMTVIENLLVAQHqhlksgvfagLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMV 170
Cdd:TIGR01186 81 ALFPHMTILQNTSLGPE----------LLGWPE-----QERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 171 TRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP--DV 248
Cdd:TIGR01186 146 AEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPanEY 225
|
....*...
gi 505189189 249 IRAYLGEE 256
Cdd:TIGR01186 226 VEEFIGKV 233
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
7-231 |
2.68e-29 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 108.24 E-value: 2.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGG--LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGV 83
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLrKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VrtFQHVRLFrEMTVIENLLvaqhqhlkSGvfagllktpafrraeaealaraaewlervgllsmanrsagnlayGQQRRL 163
Cdd:cd03228 81 V--PQDPFLF-SGTIRENIL--------SG--------------------------------------------GQRQRI 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMgISDRIYVVNQG 231
Cdd:cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIAHRLSTIR-DADRIIVLDDG 170
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-246 |
4.42e-29 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 112.48 E-value: 4.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQpllqVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglAGQAIAR 80
Cdd:PRK10851 1 MSIE----IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF--------HGTDVSR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 M-------GVVrtFQHVRLFREMTVIENL-----LVAQHQHLKSGVfaglLKTPAfrraeaealaraAEWLERVGLLSMA 148
Cdd:PRK10851 69 LhardrkvGFV--FQHYALFRHMTVFDNIafgltVLPRRERPNAAA----IKAKV------------TQLLEMVQLAHLA 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 149 NRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVV 228
Cdd:PRK10851 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM 210
|
250
....*....|....*...
gi 505189189 229 NQGTPLAQGTPAEIRNNP 246
Cdd:PRK10851 211 SQGNIEQAGTPDQVWREP 228
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
4-241 |
7.97e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 114.08 E-value: 7.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARM 81
Cdd:COG4988 334 PPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWrRQI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRtfQHVRLFrEMTVIENLLVAQHQHlksgvfagllkTPAfrraeaealaRAAEWLERVGLLSMANR----------- 150
Cdd:COG4988 414 AWVP--QNPYLF-AGTIRENLRLGRPDA-----------SDE----------ELEAALEAAGLDEFVAAlpdgldtplge 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMgISDRIYVVNQ 230
Cdd:COG4988 470 GGRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLA-QADRILVLDD 546
|
250
....*....|.
gi 505189189 231 GTPLAQGTPAE 241
Cdd:COG4988 547 GRIVEQGTHEE 557
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-256 |
1.03e-28 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 108.93 E-value: 1.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGL-LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVV 84
Cdd:cd03295 1 IEFENVTKRYGGGkKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRkIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHVRLFREMTVIENL-LVAQhqhlksgvfagLLKTPafrraEAEALARAAEWLERVGL--LSMANRSAGNLAYGQQR 161
Cdd:cd03295 81 --IQQIGLFPHMTVEENIaLVPK-----------LLKWP-----KEKIRERADELLALVGLdpAEFADRYPHELSGGQQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222
|
250
....*....|....*..
gi 505189189 242 IRNNP--DVIRAYLGEE 256
Cdd:cd03295 223 ILRSPanDFVAEFVGAD 239
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
7-250 |
1.32e-28 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 109.29 E-value: 1.32e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLA---GQ------- 76
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRdkdGQlkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 --AIARMGVVRTFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMAN-RSAG 153
Cdd:PRK10619 86 qlRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL------GLSKQEA--------RERAVKYLAKVGIDERAQgKYPV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVlLIEHDMKLVMGISDRIYVVNQGTP 233
Cdd:PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV-VVTHEMGFARHVSSHVIFLHQGKI 230
|
250
....*....|....*..
gi 505189189 234 LAQGTPAEIRNNPDVIR 250
Cdd:PRK10619 231 EEEGAPEQLFGNPQSPR 247
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
18-250 |
4.90e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 107.86 E-value: 4.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 18 GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGVVRTFQHV--RLFR 94
Cdd:PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLeVRKTVGIVFQNPddQLFA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EmTVIENllVAqhqhlksgvFAGL-LKTPafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRP 173
Cdd:PRK13639 94 P-TVEED--VA---------FGPLnLGLS-----KEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 174 ELLMLDEPAAGLNPKETDELDHLIVELrDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVIR 250
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
11-255 |
8.94e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 107.61 E-value: 8.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 11 GLSMRFGGLlavNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAG----QAI-ARMGVVR 85
Cdd:PRK13641 15 GTPMEKKGL---DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGnknlKKLrKKVSLVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQHVRLFrEMTVIENLLVAQHQhlksgvfagllktpaFRRAEAEALARAAEWLERVGL-LSMANRSAGNLAYGQQRRLE 164
Cdd:PRK13641 92 QFPEAQLF-ENTVLKDVEFGPKN---------------FGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
|
250
....*....|..
gi 505189189 245 NPD-VIRAYLGE 255
Cdd:PRK13641 235 DKEwLKKHYLDE 246
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-255 |
1.46e-27 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 107.99 E-value: 1.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRT 86
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQhvRLFREMTVIENLLVAQHQhlksgvfagllktpaFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:PRK13536 122 FD--NLDLEFTVRENLLVFGRY---------------FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETdeldHLIVE----LRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13536 185 RALINDPQLLILDEPTTGLDPHAR----HLIWErlrsLLARGK-TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
250
....*....|....*.
gi 505189189 243 RNNP---DVIRAYLGE 255
Cdd:PRK13536 260 IDEHigcQVIEIYGGD 275
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
27-231 |
2.24e-27 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 104.56 E-value: 2.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 27 LTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGqaiARMGVVRTFQHVRLFREMTVIENLLVAQ 106
Cdd:TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP---YQRPVSMLFQENNLFAHLTVRQNIGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 107 HQHLKsgvfagllktpafrrAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLN 186
Cdd:TIGR01277 96 HPGLK---------------LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 505189189 187 PKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
7-246 |
2.29e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 107.47 E-value: 2.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI--AR 80
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELraAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 --MGVVrtFQHVRLFREMTVIENllVAqhqhlksgvF----AGL-----------LktpafrraeaealaraaewLERVG 143
Cdd:COG1135 82 rkIGMI--FQHFNLLSSRTVAEN--VA---------LpleiAGVpkaeirkrvaeL-------------------LELVG 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 144 LLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDE-LDhLIVELRDRHKVSVLLIEHDMKLVMGIS 222
Cdd:COG1135 130 LSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSiLD-LLKDINRELGLTIVLITHEMDVVRRIC 208
|
250 260
....*....|....*....|....
gi 505189189 223 DRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG1135 209 DRVAVLENGRIVEQGPVLDVFANP 232
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-256 |
3.17e-27 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 108.01 E-value: 3.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMgVV 84
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLLVAQHQHLksGVFAGLLKTpafrraeaeALARAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHR--SRFDTWTET---------DRAAVERAMERTGVAQFADRPVTSLSGGERQRVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIeHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRn 244
Cdd:PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPPADVL- 227
|
250
....*....|..
gi 505189189 245 NPDVIRAYLGEE 256
Cdd:PRK09536 228 TADTLRAAFDAR 239
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
7-244 |
4.73e-27 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 109.54 E-value: 4.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGL--LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIK-----LRDRHLEGLAGQaia 79
Cdd:COG2274 474 IELENVSFRYPGDspPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILidgidLRQIDPASLRRQ--- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 rMGVVrtFQHVRLFrEMTVIENLLVAQHQHLKSGVFAgllktpafrraeaealaraaeWLERVGLLSMANR--------- 150
Cdd:COG2274 551 -IGVV--LQDVFLF-SGTIRENITLGDPDATDEEIIE---------------------AARLAGLHDFIEAlpmgydtvv 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 --SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELrdRHKVSVLLIEHDMKLVMgISDRIYVV 228
Cdd:COG2274 606 geGGSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRL--LKGRTVIIIAHRLSTIR-LADRIIVL 682
|
250
....*....|....*.
gi 505189189 229 NQGTPLAQGTPAEIRN 244
Cdd:COG2274 683 DKGRIVEDGTHEELLA 698
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
7-246 |
6.82e-27 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.95 E-value: 6.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSmRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQaiaRMGVVRT 86
Cdd:cd03299 1 LKVENLS-KDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE---KRDISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAQHQHL--KSGVFAGLLKTPAFrraeaealaraaewlerVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKvdKKEIERKVLEIAEM-----------------LGIDHLLNRKPETLSGGEQQRVA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
..
gi 505189189 245 NP 246
Cdd:cd03299 220 KP 221
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-214 |
8.42e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.17 E-value: 8.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqaiAR 80
Cdd:COG4525 2 SMLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPG----AD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVrtFQHVRLFREMTVIENLLVAqhqhLKsgvFAGLLKtpafrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:COG4525 78 RGVV--FQKDALLPWLNVLDNVAFG----LR---LRGVPK--------AERRARAEELLALVGLADFARRRIWQLSGGMR 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHD 214
Cdd:COG4525 141 QRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
24-256 |
1.31e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 105.57 E-value: 1.31e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL-EGLAGQAIA----RMGVVrtFQHVRLFREMTV 98
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLqDSARGIFLPphrrRIGYV--FQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 IENLLVAQHQHLKSGvfagllKTPAFRRaeaealaraaeWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLML 178
Cdd:COG4148 95 RGNLLYGRKRAPRAE------RRISFDE-----------VVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 179 DEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVIRAYLGEE 256
Cdd:COG4148 158 DEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGEE 235
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-242 |
2.20e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 103.56 E-value: 2.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGL--LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL-EGLAGQAIAR 80
Cdd:PRK13635 3 EEIIRVEHISFRYPDAatYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLsEETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVrtFQHV-RLFREMTV-------IENLLVAQHQHLKSGVFAgllktpafrraeaealaraaewLERVGLLSMANRSA 152
Cdd:PRK13635 83 VGMV--FQNPdNQFVGATVqddvafgLENIGVPREEMVERVDQA----------------------LRQVGMEDFLNREP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGT 232
Cdd:PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGE 217
|
250
....*....|
gi 505189189 233 PLAQGTPAEI 242
Cdd:PRK13635 218 ILEEGTPEEI 227
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
6-250 |
2.46e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 103.77 E-value: 2.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFG-GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIkLRDrhleglaGQAI--ARMG 82
Cdd:PRK13636 5 ILKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFD-------GKPIdySRKG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVRTFQHVRLFREMTVIENLLVAQHQHLKSGVFAglLKTPafrraEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRR 162
Cdd:PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN--LKLP-----EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
....*...
gi 505189189 243 RNNPDVIR 250
Cdd:PRK13636 230 FAEKEMLR 237
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
7-246 |
3.88e-26 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 102.52 E-value: 3.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRD------RHLEGLAGQAIA- 79
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDitidtaRSLSQQKGLIRQl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RMGVVRTFQHVRLFREMTVIENLLVAqhqhlkSGVFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEG------PVIVKGEPKEEA--------TARARELLAKVGLAGKETSYPRRLSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTP 239
Cdd:PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228
|
....*..
gi 505189189 240 AEIRNNP 246
Cdd:PRK11264 229 KALFADP 235
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
21-237 |
5.83e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 101.64 E-value: 5.83e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL--------RDRHLeglagqaiARMGVVRTfQHVRL 92
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVaglvpwkrRKKFL--------RRIGVVFG-QKTQL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 93 FREMTVIENLLVAQHQH-LKSGVFAGLLKtpafrraeaealaraaewlERVGLLSMA---NRSAGNLAYGQQRRLEIARC 168
Cdd:cd03267 107 WWDLPVIDSFYLLAAIYdLPPARFKKRLD-------------------ELSELLDLEellDTPVRQLSLGQRMRAEIAAA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 169 MVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03267 168 LLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
4-250 |
1.08e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 101.61 E-value: 1.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGG--LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglagqaiarM 81
Cdd:PRK13632 5 SVMIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI---------------D 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIenllVAQH---QHLKSGVFAGLlktpAF-----RRAEAEALARAAEWLERVGLLSMANRSAG 153
Cdd:PRK13632 70 GITISKENLKEIRKKIGI----IFQNpdnQFIGATVEDDI----AFglenkKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMgISDRIYVVNQGTP 233
Cdd:PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKL 220
|
250
....*....|....*..
gi 505189189 234 LAQGTPAEIRNNPDVIR 250
Cdd:PRK13632 221 IAQGKPKEILNNKEILE 237
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
4-231 |
1.22e-25 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 104.61 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLE-GLAGQAIArMG 82
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRfASTTAALA-AG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVRTFQHVRLFREMTVIENLLVAQHQHlKSGVF-AGLLKTPAfrraeaealaraAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPH-KGGIVnRRLLNYEA------------REQLEHLGVDIDPDTPLKYLSIGQRQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVsVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV-ILYVSHRMEEIFALCDAITVFKDG 216
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
37-246 |
1.37e-25 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 102.57 E-value: 1.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 37 LIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDrhlEGLAGQAIARMGVVRTFQHVRLFREMTVIENLLVAQHQHlksgvfa 116
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDG---EDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 117 gllKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHL 196
Cdd:TIGR01187 71 ---KVPR-----AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLE 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505189189 197 IVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:TIGR01187 143 LKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-237 |
2.09e-25 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 99.75 E-value: 2.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR--DRHLEGLagQAIA 79
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDgfDVVKEPA--EARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 RMGVVrtFQHVRLFREMTVIENLlvaqhqhlksGVFAGL--LKTPAFrraeaealARAAEWL-ERVGLLSMANRSAGNLA 156
Cdd:cd03266 79 RLGFV--SDSTGLYDRLTARENL----------EYFAGLygLKGDEL--------TARLEELaDRLGMEELLDRRVGGFS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQ 236
Cdd:cd03266 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK-CILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
.
gi 505189189 237 G 237
Cdd:cd03266 218 G 218
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
6-215 |
2.60e-25 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 100.16 E-value: 2.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAgqaiARMGVVr 85
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG----AERGVV- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 tFQHVRLFREMTVIENllVAQHQHLksgvfAGLLKTpafrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:PRK11248 76 -FQNEGLLPWRNVQDN--VAFGLQL-----AGVEKM--------QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGI 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDM 215
Cdd:PRK11248 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-231 |
4.58e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 97.50 E-value: 4.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRfgglLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:cd03215 3 PVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 -----RtfQHVRLFREMTVIENLLVAQhqhlksgvfagllktpafrraeaealaraaewlervgLLSmanrsAGNlaygQ 159
Cdd:cd03215 79 yvpedR--KREGLVLDLSVAENIALSS-------------------------------------LLS-----GGN----Q 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 160 QRRLeIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03215 111 QKVV-LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK-AVLLISSELDELLGLCDRILVMYEG 180
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
7-231 |
4.66e-25 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 98.48 E-value: 4.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGqaiARMGVVRT 86
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVRLFREMTVIENLLVAqhqhLKsgvfagLLKTPAFRRAeaealaraaewlERV-------GLLSMANRSAGNLAYGQ 159
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFG----LK------LRKVPKDEID------------ERVrevaellQIEHLLDRKPKQLSGGQ 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03301 136 RQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
5-246 |
7.04e-25 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 102.84 E-value: 7.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF---GGLL--------AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSGGTIKLRDRHLEGL 73
Cdd:COG4172 274 PLLEARDLKVWFpikRGLFrrtvghvkAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 74 AGQAI----ARMGVVrtFQ------HVRLFREMTVIENLLVaqHQHLKSGvfagllktpafrraeAEALARAAEWLERVG 143
Cdd:COG4172 353 SRRALrplrRRMQVV--FQdpfgslSPRMTVGQIIAEGLRV--HGPGLSA---------------AERRARVAEALEEVG 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 144 LL-SMANRsagnlaY------GQQRRLEIARCMVTRPELLMLDEPaaglnpkeTDELD--------HLIVELRDRHKVSV 208
Cdd:COG4172 414 LDpAARHR------YphefsgGQRQRIAIARALILEPKLLVLDEP--------TSALDvsvqaqilDLLRDLQREHGLAY 479
|
250 260 270
....*....|....*....|....*....|....*...
gi 505189189 209 LLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG4172 480 LFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAP 517
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
22-231 |
7.18e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 98.69 E-value: 7.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMGVVR--TFQHVRLFREMTVI 99
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE--------GKQITEPGPDRmvVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLLVAQHQhlksgVFAGLLKTpafrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLD 179
Cdd:TIGR01184 73 ENIALAVDR-----VLPDLSKS--------ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 505189189 180 EPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
6-249 |
1.03e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 99.92 E-value: 1.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGG-----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRD----RHLEGLAGQ 76
Cdd:PRK13631 21 ILRVKNLYCVFDEkqeneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDiyigDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 AIARMGVVRTFQhvRLFREMTVIenLLVAQHQHLKSGVFAGLLKTP-AFRRAEAEALARAAEWLERVGL-LSMANRSAGN 154
Cdd:PRK13631 101 TNPYSKKIKNFK--ELRRRVSMV--FQFPEYQLFKDTIEKDIMFGPvALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPL 234
Cdd:PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK-TVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
250
....*....|....*
gi 505189189 235 AQGTPAEIRNNPDVI 249
Cdd:PRK13631 256 KTGTPYEIFTDQHII 270
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
8-225 |
1.15e-24 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 97.33 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFG-GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEglAGQAIARMGVVrt 86
Cdd:cd03226 1 RIENISFSYKkGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK--AKERRKSIGYV-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHVR--LFREmTVIENLLV-AQHQHLKSGVFAGLLKTpafrraeaealaraaewlerVGLLSMANRSAGNLAYGQQRRL 163
Cdd:cd03226 77 MQDVDyqLFTD-SVREELLLgLKELDAGNEQAETVLKD--------------------LDLYALKERHPLSLSGGQKQRL 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRI 225
Cdd:cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRV 196
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
5-247 |
1.31e-24 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 98.33 E-value: 1.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL--------RDRHLEGLAG- 75
Cdd:COG4598 7 PALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVggeeirlkPDRDGELVPAd 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 ----QAI-ARMGVVrtFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMANR 150
Cdd:COG4598 87 rrqlQRIrTRLGMV--FQSFNLWSHMTVLENVIEAPVHVL------GRPKAEA--------IERAEALLAKVGLADKRDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQ 230
Cdd:COG4598 151 YPAHLSGGQQQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGR-TMLVVTHEMGFARDVSSHVVFLHQ 229
|
250
....*....|....*..
gi 505189189 231 GTPLAQGTPAEIRNNPD 247
Cdd:COG4598 230 GRIEEQGPPAEVFGNPK 246
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
17-231 |
1.48e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 97.09 E-value: 1.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 17 GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA----RMGVVrtFQHVRL 92
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrrKIGVV--FQDFRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 93 FREMTVIENLLVA------QHQHLKSGVFAGllktpafrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:cd03292 90 LPDRNVYENVAFAlevtgvPPREIRKRVPAA---------------------LELVGLSHKHRALPAELSGGEQQRVAIA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERG 212
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-231 |
1.74e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 98.23 E-value: 1.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFG-GL----LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM 81
Cdd:COG1101 2 LELKNLSKTFNpGTvnekRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 gVVRTFQHVRL--FREMTVIENLLVAQHQHLKSGVFAGLLKTpafrraeaeALARAAEWLERVGLlSMANR---SAGNLA 156
Cdd:COG1101 82 -IGRVFQDPMMgtAPSMTIEENLALAYRRGKRRGLRRGLTKK---------RRELFRELLATLGL-GLENRldtKVGLLS 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMK--LVMGisDRIYVVNQG 231
Cdd:COG1101 151 GGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEqaLDYG--NRLIMMHEG 225
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-247 |
2.04e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 98.55 E-value: 2.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-----MGVVRTFQHVRLFR 94
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKplrkkVGIVFQFPEHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EmTVienllvaqhqhLKSGVFAGLlktpAFRRAEAEALARAAEWLERVGL-LSMANRSAGNLAYGQQRRLEIARCMVTRP 173
Cdd:PRK13634 101 E-TV-----------EKDICFGPM----NFGVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 174 ELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPD 247
Cdd:PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
24-237 |
2.76e-24 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 96.60 E-value: 2.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEgEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA-----RMGVVrtFQHVRLFREMTV 98
Cdd:cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLppqqrKIGLV--FQQYALFPHLNV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 IENLLVAQHQHLKSgvfagllktpafrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLML 178
Cdd:cd03297 93 RENLAFGLKRKRNR-----------------EDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 179 DEPAAGLNPKETDEldhLIVELRDRHK---VSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03297 156 DEPFSALDRALRLQ---LLPELKQIKKnlnIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-246 |
5.52e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 98.64 E-value: 5.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDrhlEGLAGQAIAR 80
Cdd:PRK11432 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG---EDVTHRSIQQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRLFREMTVIENLlvaqhqhlksGVFAGLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:PRK11432 78 RDICMVFQSYALFPHMSLGENV----------GYGLKMLGVPK-----EERKQRVKEALELVDLAGFEDRYVDQISGGQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
|
....*.
gi 505189189 241 EIRNNP 246
Cdd:PRK11432 223 ELYRQP 228
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-231 |
6.77e-24 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 96.53 E-value: 6.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRH--LEGLAGQAI 78
Cdd:PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgqLRDLYALSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 ARM--------GVVRtfQHVRLFREMTVI------ENLLVAQHQHLksgvfaGLLKTPAfrraeaealaraAEWLERVGL 144
Cdd:PRK11701 81 AERrrllrtewGFVH--QHPRDGLRMQVSaggnigERLMAVGARHY------GDIRATA------------GDWLERVEI 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 -LSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLN----PKETDELDHLIVELRdrhkVSVLLIEHDMKLVM 219
Cdd:PRK11701 141 dAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDvsvqARLLDLLRGLVRELG----LAVVIVTHDLAVAR 216
|
250
....*....|..
gi 505189189 220 GISDRIYVVNQG 231
Cdd:PRK11701 217 LLAHRLLVMKQG 228
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
7-197 |
1.24e-23 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 94.35 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL---EGLAGQAIARMGv 83
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaeqRDEPHENILYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 vrtfqHVR-LFREMTVIENL--LVAQHQHLKSGVFAGllktpafrraeaealaraaewLERVGLLSMANRSAGNLAYGQQ 160
Cdd:TIGR01189 80 -----HLPgLKPELSALENLhfWAAIHGGAQRTIEDA---------------------LAAVGLTGFEDLPAAQLSAGQQ 133
|
170 180 190
....*....|....*....|....*....|....*..
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLI 197
Cdd:TIGR01189 134 RRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL 170
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
6-246 |
1.57e-23 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 95.16 E-value: 1.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGlaGQAIARM---- 81
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND--PKVDERLirqe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 -GVVrtFQHVRLFREMTVIENLLVAQHQhlksgvFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQ 160
Cdd:PRK09493 79 aGMV--FQQFYLFPHLTALENVMFGPLR------VRGASKEEA--------EKQARELLAKVGLAERAHHYPSELSGGQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPketdELDHLIVE-LRD--RHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:PRK09493 143 QRVAIARALAVKPKLMLFDEPTSALDP----ELRHEVLKvMQDlaEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218
|
....*....
gi 505189189 238 TPAEIRNNP 246
Cdd:PRK09493 219 DPQVLIKNP 227
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1-253 |
2.09e-23 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 97.80 E-value: 2.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSmrfgglLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI--------KLRDRHLeg 72
Cdd:PRK10070 29 LSKEQILEKTGLS------LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVlidgvdiaKISDAEL-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 lagQAIARMGVVRTFQHVRLFREMTVIENLLVAQHQhlkSGVFAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSA 152
Cdd:PRK10070 101 ---REVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL---AGINAEERREKALDA------------LRQVGLENYAHSYP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242
|
250 260
....*....|....*....|...
gi 505189189 233 PLAQGTPAEIRNNP--DVIRAYL 253
Cdd:PRK10070 243 VVQVGTPDEILNNPanDYVRTFF 265
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
27-237 |
3.72e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 93.33 E-value: 3.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 27 LTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrHLEGLAGQAIARMGVVRTFQHVRLFREMTVIENLlvaq 106
Cdd:cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI---NGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNV---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 107 hqhlksgvfaGLLKTPAFRRAEAEALARAAEwLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLN 186
Cdd:cd03298 92 ----------GLGLSPGLKLTAEDRQAIEVA-LARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 505189189 187 PKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
21-252 |
5.97e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.80 E-value: 5.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQ-----AIARMGVVRTFQHVRLFRE 95
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQkeikpVRKKVGVVFQFPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 mTVIENLLVAQHQHlksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLL-SMANRSAGNLAYGQQRRLEIARCMVTRPE 174
Cdd:PRK13643 101 -TVLKDVAFGPQNF-------GIPKEKA--------EKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 175 LLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVIRAY 252
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQ-TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAH 241
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
5-231 |
1.10e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 93.20 E-value: 1.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLqVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIklrdrhLEGLAGQAIARMGVV 84
Cdd:PRK11247 12 PLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL------LAGTAPLAEAREDTR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLLVAqhqhLKsgvfaGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK11247 85 LMFQDARLLPWKKVIDNVGLG----LK-----GQWRDAALQA------------LAAVGLADRANEWPAALSGGQKQRVA 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
9-214 |
1.33e-22 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 96.29 E-value: 1.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 9 VEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRhleglagqaiARMGVVRtfQ 88
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG----------LRIGYLP--Q 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 89 HVRLFREMTVIENLLVAqHQHLKSGV--FAGLLKTPAFRRAEAEALARAAEWLERVG----------LLS-------MAN 149
Cdd:COG0488 69 EPPLDDDLTVLDTVLDG-DAELRALEaeLEELEAKLAEPDEDLERLAELQEEFEALGgweaearaeeILSglgfpeeDLD 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 150 RSAGNLAYGQQRRLEIARCMVTRPELLMLDEPaaglnpkeTDELDHLIVE-LRD---RHKVSVLLIEHD 214
Cdd:COG0488 148 RPVSELSGGWRRRVALARALLSEPDLLLLDEP--------TNHLDLESIEwLEEflkNYPGTVLVVSHD 208
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
4-232 |
1.39e-22 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 92.50 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF-----GG--LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRH----LEG 72
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwvdLAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 LAGQAIAR-----MGVVRTFQHV--RLFREMTVIENLLVAqhqhlksGVFAGLLKTPAfrraeaealaraAEWLERVGL- 144
Cdd:COG4778 82 ASPREILAlrrrtIGYVSQFLRVipRVSALDVVAEPLLER-------GVDREEARARA------------RELLARLNLp 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 -----LSMANRSAGnlaygQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVM 219
Cdd:COG4778 143 erlwdLPPATFSGG-----EQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVRE 216
|
250
....*....|...
gi 505189189 220 GISDRIYVVNQGT 232
Cdd:COG4778 217 AVADRVVDVTPFS 229
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
8-255 |
1.77e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 94.10 E-value: 1.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI--ARM 81
Cdd:PRK11153 3 ELKNISKVFPQggrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELrkARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIENllVAQHQHLksgvfAGLLKtpafrraeAEALARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDN--VALPLEL-----AGTPK--------AEIKARVTELLELVGLSDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
250
....*....|....*.
gi 505189189 242 IRNNP--DVIRAYLGE 255
Cdd:PRK11153 228 VFSHPkhPLTREFIQS 243
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-227 |
3.07e-22 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 93.26 E-value: 3.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRF---GGLL--------AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRH 69
Cdd:COG4608 2 AMAEPLLEVRDLKKHFpvrGGLFgrtvgvvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 70 LEGLAGQAIA----RMGVVrtFQ--HVRLFREMTV---IENLLVAQHqhlksgvfaglLKTPAfrraeaEALARAAEWLE 140
Cdd:COG4608 82 ITGLSGRELRplrrRMQMV--FQdpYASLNPRMTVgdiIAEPLRIHG-----------LASKA------ERRERVAELLE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 141 RVGLL-SMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEP---------AAGLNpketdeldhLIVELRDRHKVSVLL 210
Cdd:COG4608 143 LVGLRpEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPvsaldvsiqAQVLN---------LLEDLQDELGLTYLF 213
|
250
....*....|....*..
gi 505189189 211 IEHDMKLVMGISDRIYV 227
Cdd:COG4608 214 ISHDLSVVRHISDRVAV 230
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
21-245 |
3.07e-22 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 93.23 E-value: 3.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI--------KLRDRHLeglagqaiARMGVV---RTfqh 89
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVrvlgyvpfKRRKEFA--------RRIGVVfgqRS--- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 90 vRLFREMTVIENLLVAQH----------QHLK--SGVF--AGLLKTPafrraeaealaraaewlerVGLLSManrsagnl 155
Cdd:COG4586 106 -QLWWDLPAIDSFRLLKAiyripdaeykKRLDelVELLdlGELLDTP-------------------VRQLSL-------- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 ayGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:COG4586 158 --GQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIY 235
|
250
....*....|
gi 505189189 236 QGTPAEIRNN 245
Cdd:COG4586 236 DGSLEELKER 245
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
10-243 |
3.60e-22 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 95.19 E-value: 3.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 10 EGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEglAGQAIARMGVVRTFQH 89
Cdd:NF033858 270 RGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD--AGDIATRRRVGYMSQA 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 90 VRLFREMTVIENLLVaqHQHLksgvfagllktpaFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCM 169
Cdd:NF033858 348 FSLYGELTVRQNLEL--HARL-------------FHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAV 412
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 170 VTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEIR 243
Cdd:NF033858 413 IHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMNEAER-CDRISLMHAGRVLASDTPAALV 485
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-231 |
3.73e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 94.70 E-value: 3.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRfgglLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGL-AGQAIARmGV 83
Cdd:COG1129 255 VVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRsPRDAIRA-GI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 V-----RtfQHVRLFREMTVIENLLVAQHQHLKSGvfaGLLKTPAfrraeaeALARAAEWLERVGL------LSMANRSA 152
Cdd:COG1129 330 AyvpedR--KGEGLVLDLSIRENITLASLDRLSRG---GLLDRRR-------ERALAEEYIKRLRIktpspeQPVGNLSG 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GNlaygQQRRLeIARCMVTRPELLMLDEPAAGLnpketD-----ELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYV 227
Cdd:COG1129 398 GN----QQKVV-LAKWLATDPKVLILDEPTRGI-----DvgakaEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILV 466
|
....
gi 505189189 228 VNQG 231
Cdd:COG1129 467 MREG 470
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-251 |
4.45e-22 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 94.73 E-value: 4.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR 80
Cdd:PRK15439 6 TTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRLFREMTVIENLLVaqhqhlksgvfaGLLKTPAFRRAEAEALARAAEWLErvglLSManrSAGNLAYGQQ 160
Cdd:PRK15439 86 LGIYLVPQEPLLFPNLSVKENILF------------GLPKRQASMQKMKQLLAALGCQLD----LDS---SAGSLEVADR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:PRK15439 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTA 225
|
250
....*....|.
gi 505189189 241 EIRNNpDVIRA 251
Cdd:PRK15439 226 DLSTD-DIIQA 235
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-217 |
4.78e-22 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 90.96 E-value: 4.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQA 77
Cdd:COG4181 4 SSAPIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 78 IAR-----MGVVrtFQHVRLFREMTVIENLLVaqhqhlksgvfagllktPAFRRAEAEALARAAEWLERVGLLSMANRSA 152
Cdd:COG4181 84 RARlrarhVGFV--FQSFQLLPTLTALENVML-----------------PLELAGRRDARARARALLERVGLGHRLDHYP 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKL 217
Cdd:COG4181 145 AQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPAL 209
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
7-251 |
4.81e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 92.11 E-value: 4.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGVV 84
Cdd:PRK13647 5 IEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVrSKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtFQHV--RLFrEMTVIE-------NLLVAQHQhLKSGVFAGllktpafrraeaealaraaewLERVGLLSMANRSAGNL 155
Cdd:PRK13647 85 --FQDPddQVF-SSTVWDdvafgpvNMGLDKDE-VERRVEEA---------------------LKAVRMWDFRDKPPYHL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:PRK13647 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLKEGRVLA 218
|
250
....*....|....*.
gi 505189189 236 QGTPaEIRNNPDVIRA 251
Cdd:PRK13647 219 EGDK-SLLTDEDIVEQ 233
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
18-244 |
8.83e-22 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 94.31 E-value: 8.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 18 GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEglAGQAIARMGVVRTFQHVRLFREMT 97
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLT 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIENLLvaqhqhlksgvFAGLLKTPAFRRAEAEALARaaewLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLM 177
Cdd:TIGR01257 1020 VAEHIL-----------FYAQLKGRSWEEAQLEMEAM----LEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 178 LDEPAAGLNPKETDELDHLIveLRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-245 |
1.17e-21 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 90.84 E-value: 1.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 3 VQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSggtiKLRDRHLEgLAGQAIARMG 82
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD----KSAGSHIE-LLGRTVQREG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVR------------TFQHVRLFREMTVIENLLVAqhqhlksgvfaGLLKTP----AFRRAEAEALARAAEWLERVGLLS 146
Cdd:PRK09984 76 RLArdirksrantgyIFQQFNLVNRLSVLENVLIG-----------ALGSTPfwrtCFSWFTREQKQRALQALTRVGMVH 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 147 MANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIY 226
Cdd:PRK09984 145 FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV 224
|
250
....*....|....*....
gi 505189189 227 VVNQGTPLAQGTPAEIRNN 245
Cdd:PRK09984 225 ALRQGHVFYDGSSQQFDNE 243
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
21-250 |
1.55e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 90.63 E-value: 1.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMGVVRTFQHVRLFREMTVIE 100
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR--------GEPITKENIREVRKFVGLVFQNPDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLLVAQHQHLKSGVFAGLLKTPAFRRAEAEAlaraaewLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDE 180
Cdd:PRK13652 91 IFSPTVEQDIAFGPINLGLDEETVAHRVSSA-------LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 181 PAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVIR 250
Cdd:PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
19-245 |
1.90e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 90.92 E-value: 1.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 19 LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI--KLRDRHLEGLAGQAIA----------------- 79
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKEKEKvleklviqktrfkkikk 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 ------RMGVVRTFQHVRLFrEMTVIENLLVAQhqhlksgVFAGLLKTPAfrraeaeaLARAAEWLERVGL-LSMANRSA 152
Cdd:PRK13651 100 ikeirrRVGVVFQFAEYQLF-EQTIEKDIIFGP-------VSMGVSKEEA--------KKRAAKYIELVGLdESYLQRSP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIFFKDGK 242
|
250
....*....|...
gi 505189189 233 PLAQGTPAEIRNN 245
Cdd:PRK13651 243 IIKDGDTYDILSD 255
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
7-238 |
2.34e-21 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 89.30 E-value: 2.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL---EGLAGQAIA--RM 81
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIRelRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRTFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVL------GLSKDQA--------LARAEKLLERLRLKPYADRFPLHLSGGQQQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVlLIEHDMKLVMGISDRIYVVNQGTPLAQGT 238
Cdd:PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQV-IVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-246 |
3.34e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 90.50 E-value: 3.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRP---SGGTIKLRDRHLEGLAGQAI 78
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 -----ARMGVVrtFQH-------VrlfreMTV----IENLLVaqHQHL-KSGVFAGLLKtpafrraeaealaraaeWLER 141
Cdd:COG0444 81 rkirgREIQMI--FQDpmtslnpV-----MTVgdqiAEPLRI--HGGLsKAEARERAIE-----------------LLER 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 142 VGLLSMANRSAgnlAY------GQQRRLEIARCMVTRPELLMLDEPAAGLnpketdelD--------HLIVELRDRHKVS 207
Cdd:COG0444 135 VGLPDPERRLD---RYphelsgGMRQRVMIARALALEPKLLIADEPTTAL--------DvtiqaqilNLLKDLQRELGLA 203
|
250 260 270
....*....|....*....|....*....|....*....
gi 505189189 208 VLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG0444 204 ILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFENP 242
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-232 |
3.40e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.05 E-value: 3.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglaGQAIaRMGVV 84
Cdd:COG0488 314 KVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL---------GETV-KIGYF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RtfQHVRLFR-EMTVIENLL----VAQHQHLkSGVFAGLLKTPAfrraeaealaraaEWLERVGLLSManrsagnlayGQ 159
Cdd:COG0488 384 D--QHQEELDpDKTVLDELRdgapGGTEQEV-RGYLGRFLFSGD-------------DAFKPVGVLSG----------GE 437
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPaaglnpkeTDELD----HLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:COG0488 438 KARLALAKLLLSPPNVLLLDEP--------TNHLDietlEALEEALDDFPGTVLLVSHDRYFLDRVATRILEFEDGG 506
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-246 |
3.84e-21 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 92.05 E-value: 3.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKT----TVFNCLTGFYRPSGGTIKLRDRHLEG 72
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 LAGQAI-----ARMGVVrtFQhvrlfrE-MT-----------VIENLLVaqHQhlksgvfaGLLKTPAfrraeaeaLARA 135
Cdd:COG4172 81 LSERELrrirgNRIAMI--FQ------EpMTslnplhtigkqIAEVLRL--HR--------GLSGAAA--------RARA 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 136 AEWLERVGLLSMANRSAgnlAY------GQQRRLEIARCMVTRPELLMLDEPaaglnpkeTDELD--------HLIVELR 201
Cdd:COG4172 135 LELLERVGIPDPERRLD---AYphqlsgGQRQRVMIAMALANEPDLLIADEP--------TTALDvtvqaqilDLLKDLQ 203
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 505189189 202 DRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG4172 204 RELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFAAP 248
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
7-246 |
4.54e-21 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 88.53 E-value: 4.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRD------RHLEGLAGQAIAR 80
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 -MGVVrtFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:COG4161 83 kVGMV--FQQYNLWPHLTVMENLIEAPCKVL------GLSKEQA--------REKAMKLLARLRLTDKADRFPLHLSGGQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVlLIEHDMKLVMGISDRIYVVNQGTPLAQGTp 239
Cdd:COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQV-IVTHEVEFARKVASQVVYMEKGRIIEQGD- 224
|
....*..
gi 505189189 240 AEIRNNP 246
Cdd:COG4161 225 ASHFTQP 231
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
5-249 |
4.69e-21 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 88.63 E-value: 4.69e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKlRDRHLeglagqaiaRMGVV 84
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-RNGKL---------RIGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTfqhvRLFREMTVieNLLVAQHQHLKSGVFAGLLkTPAfrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK09544 73 PQ----KLYLDTTL--PLTVNRFLRLRPGTKKEDI-LPA---------------LKRVQAGHLIDAPMQKLSGGETQRVL 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTpLAQGTPAEIRN 244
Cdd:PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHI-CCSGTPEVVSL 209
|
....*
gi 505189189 245 NPDVI 249
Cdd:PRK09544 210 HPEFI 214
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-246 |
7.85e-21 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 88.17 E-value: 7.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCL------------TG--------FYRPSGGTI 63
Cdd:COG1117 9 EPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmndlipgarvEGeilldgedIYDPDVDVV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 64 KLRdrhleglagqaiARMGVVrtFQHVRLFReMTVIENllVA----QHQHLKSGVFAGLLKTPafrraeaealaraaewL 139
Cdd:COG1117 89 ELR------------RRVGMV--FQKPNPFP-KSIYDN--VAyglrLHGIKSKSELDEIVEES----------------L 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 140 ERVGL-------LsmaNRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIE 212
Cdd:COG1117 136 RKAALwdevkdrL---KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDY--TIVIVT 210
|
250 260 270
....*....|....*....|....*....|....
gi 505189189 213 HDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:COG1117 211 HNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNP 244
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
4-224 |
9.30e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 87.91 E-value: 9.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCL------------TG--------FYRPSGGTI 63
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndlnpevtiTGsivynghnIYSPRTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 64 KLRDrhleglagqaiaRMGVVrtFQHVRLFrEMTVIENLL-------VAQHQHLKSGVFAGLlktpafrraeaealARAA 136
Cdd:PRK14239 83 DLRK------------EIGMV--FQQPNPF-PMSIYENVVyglrlkgIKDKQVLDEAVEKSL--------------KGAS 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 137 EWLERVGLLsmaNRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrhKVSVLLIEHDMK 216
Cdd:PRK14239 134 IWDEVKDRL---HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ 208
|
....*...
gi 505189189 217 LVMGISDR 224
Cdd:PRK14239 209 QASRISDR 216
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
17-241 |
2.01e-20 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 86.51 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 17 GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GVVrtFQHVRLFRE 95
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMiGVV--LQDTFLFSG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 mTVIENLLVAqHQHLKSGVFAGLLKTPAFRRAEAEalaraaewLERvGLLSMANRSAGNLAYGQQRRLEIARCMVTRPEL 175
Cdd:cd03254 92 -TIMENIRLG-RPNATDEEVIEAAKEAGAHDFIMK--------LPN-GYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 176 LMLDEPAAGLNPkETDEL--DHLIVELRDRhkvSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03254 161 LILDEATSNIDT-ETEKLiqEALEKLMKGR---TSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDE 223
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
10-242 |
3.95e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 85.79 E-value: 3.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 10 EGLSMRFggllavnnvALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDrhlEGLAGQAIARMGVVRTFQH 89
Cdd:PRK10771 12 HHLPMRF---------DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG---QDHTTTPPSRRPVSMLFQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 90 VRLFREMTVIENLLVAQHQHLK-SGVFAGLLKTPAfrraeaealaraaewlERVGLLSMANRSAGNLAYGQQRRLEIARC 168
Cdd:PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKlNAAQREKLHAIA----------------RQMGIEDLLARLPGQLSGGQRQRVALARC 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 169 MVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
7-242 |
7.34e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 84.50 E-value: 7.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF--YRPSGGTIKLRDRHLEGLAGQAIARMGVV 84
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLlvaqhqhlkSGVFAGLlktpafrraeaealaraaewlervgllsmanrsAGnlayGQQRRLE 164
Cdd:cd03217 81 LAFQYPPEIPGVKNADFL---------RYVNEGF---------------------------------SG----GEKKRNE 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGI-SDRIYVVNQGTPLAQGtPAEI 242
Cdd:cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKEL 191
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
6-232 |
7.51e-20 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 87.92 E-value: 7.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSG---GTIklrdrHLEGLAGQ-----A 77
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHGsyeGEI-----LFDGEVCRfkdirD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 78 IARMGVVRTFQHVRLFREMTVIENLLVAqHQHLKSGVF---AGLLKTPAFrraeaealaraaewLERVGLLSMANRSAGN 154
Cdd:NF040905 75 SEALGIVIIHQELALIPYLSIAENIFLG-NERAKRGVIdwnETNRRAREL--------------LAKVGLDESPDTLVTD 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:NF040905 140 IGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKA-QGITSIIISHKLNEIRRVADSITVLRDGR 216
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-228 |
9.22e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 88.11 E-value: 9.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGG-LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGlAGQAIARMGVVR 85
Cdd:TIGR02857 322 LEFSGVSVAYPGrRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD-ADADSWRDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQHVRLFrEMTVIENLLVAQhqhlkSGVFAGLLKTPafrraeaealaraaewLERVGLLSMAN------------RSAG 153
Cdd:TIGR02857 401 VPQHPFLF-AGTIAENIRLAR-----PDASDAEIREA----------------LERAGLDEFVAalpqgldtpigeGGAG 458
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 154 nLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLvMGISDRIYVV 228
Cdd:TIGR02857 459 -LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLAL-AALADRIVVL 529
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-242 |
2.08e-19 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 86.98 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL--RDRHLEGLAGQAIARM 81
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYlgKEVTFNGPKSSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVRtfQHVRLFREMTVIENllvaqhqhlksgVFAGLLKTPAFrraeaealaRAAEW----------LERVGLLSMANRS 151
Cdd:PRK10762 82 GIIH--QELNLIPQLTIAEN------------IFLGREFVNRF---------GRIDWkkmyaeadklLARLNLRFSSDKL 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK10762 139 VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG-RGIVYISHRLKEIFEICDDVTVFRDG 217
|
250
....*....|.
gi 505189189 232 TPLAQGTPAEI 242
Cdd:PRK10762 218 QFIAEREVADL 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
4-217 |
2.32e-19 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 83.71 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF--GGLLA--VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIA 79
Cdd:PRK11629 3 KILLQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 -----RMGVVRTFQHvrLFREMTVIENLLVAQhqhLKSGVFAGLLKTPAFRRaeaealaraaewLERVGLLSMANRSAGN 154
Cdd:PRK11629 83 elrnqKLGFIYQFHH--LLPDFTALENVAMPL---LIGKKKPAEINSRALEM------------LAAVGLEHRANHRPSE 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKL 217
Cdd:PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-242 |
2.49e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 86.78 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF-----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR------DRHLEG 72
Cdd:TIGR03269 277 EPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdewvDMTKPG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 --LAGQAIARMGVVrtFQHVRLFREMTVIENLLVAQHQHL------KSGVFAglLKTPAFRRAEAEalaraaewlervgl 144
Cdd:TIGR03269 357 pdGRGRAKRYIGIL--HQEYDLYPHRTVLDNLTEAIGLELpdelarMKAVIT--LKMVGFDEEKAE-------------- 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 lSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDR 224
Cdd:TIGR03269 419 -EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497
|
250
....*....|....*...
gi 505189189 225 IYVVNQGTPLAQGTPAEI 242
Cdd:TIGR03269 498 AALMRDGKIVKIGDPEEI 515
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
5-185 |
3.04e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 83.00 E-value: 3.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDR--HLEGLAGQaIARMG 82
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGdiDDPDVAEA-CHYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 vvrtfqHVR-LFREMTVIENLLvaqhqhlksgVFAGLLKTPAFRRAEAealaraaewLERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK13539 80 ------HRNaMKPALTVAENLE----------FWAAFLGGEELDIAAA---------LEAVGLAPLAHLPFGYLSAGQKR 134
|
170 180
....*....|....*....|....
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGL 185
Cdd:PRK13539 135 RVALARLLVSNRPIWILDEPTAAL 158
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-246 |
3.20e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 83.93 E-value: 3.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGgTIKLRDRhLEgLAGQAI------ 78
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES-EVRVEGR-VE-FFNQNIyerrvn 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 ---ARMGVVRTFQHVRLFrEMTVIENL-----LVAQHQHLK-SGVFAGLLKTPAFrraeaealaraaeWLErvgLLSMAN 149
Cdd:PRK14258 83 lnrLRRQVSMVHPKPNLF-PMSVYDNVaygvkIVGWRPKLEiDDIVESALKDADL-------------WDE---IKHKIH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISD--RIYV 227
Cdd:PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDftAFFK 225
|
250 260
....*....|....*....|..
gi 505189189 228 VNQ---GTPLAQGTPAEIRNNP 246
Cdd:PRK14258 226 GNEnriGQLVEFGLTKKIFNSP 247
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-252 |
3.34e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 84.45 E-value: 3.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI---------KLRDRHLEglagQAIARMGVVRTFQHVR 91
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVtvdditithKTKDKYIR----PVRKRIGMVFQFPESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 92 LF-----REMTVIENLLVAQHQHLKSGVFAGLLKtpafrraeaealaraaEWLERvgllSMANRSAGNLAYGQQRRLEIA 166
Cdd:PRK13646 98 LFedtveREIIFGPKNFKMNLDEVKNYAHRLLMD----------------LGFSR----DVMSQSPFQMSGGQMRKIAIV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
....*.
gi 505189189 247 DVIRAY 252
Cdd:PRK13646 238 KKLADW 243
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-246 |
3.58e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 83.81 E-value: 3.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTT---VFNCLTGFY---RPSGGTIklrdrhlegLAGQAIAR 80
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTllrVFNRLIELYpeaRVSGEVY---------LDGQDIFK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRL-FREMTVIENLLVAQHQHLKsgvfaglLKTPAFRRAEAEALARAAEWLERVGLL-SMANR---SAGNL 155
Cdd:PRK14247 75 MDVIELRRRVQMvFQIPNPIPNLSIFENVALG-------LKLNRLVKSKKELQERVRWALEKAQLWdEVKDRldaPAGKL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
250
....*....|.
gi 505189189 236 QGTPAEIRNNP 246
Cdd:PRK14247 226 WGPTREVFTNP 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
21-249 |
4.97e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 83.90 E-value: 4.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL-EGLAG-QAIARM----GVVRTFQHVRLFR 94
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKiKEVKRLrkeiGLVFQFPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EmtVIENLLVAQHQHLKSGVFAGLLKTPafrraeaealaraaewlERVGLLSM----ANRSAGNLAYGQQRRLEIARCMV 170
Cdd:PRK13645 106 E--TIEKDIAFGPVNLGENKQEAYKKVP-----------------ELLKLVQLpedyVKRSPFELSGGQKRRVALAGIIA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 171 TRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPDVI 249
Cdd:PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
20-242 |
1.11e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 82.88 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVVrtFQHV-RLFREMT 97
Cdd:PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKhIGIV--FQNPdNQFVGSI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 V-------IENLLVAqHQHLKSGVfagllktpafrraeaealaraAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMV 170
Cdd:PRK13648 101 VkydvafgLENHAVP-YDEMHRRV---------------------SEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 171 TRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
7-242 |
1.34e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 82.37 E-value: 1.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM----- 81
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRlallp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 -------GV-VRTF------QHVRLFREMTVIENLLVAQHqhlksgvfagllktpafrraeaealaraaewLERVGLLSM 147
Cdd:PRK11231 83 qhhltpeGItVRELvaygrsPWLSLWGRLSAEDNARVNQA-------------------------------MEQTRINHL 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 148 ANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYV 227
Cdd:PRK11231 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLVV 210
|
250
....*....|....*
gi 505189189 228 VNQGTPLAQGTPAEI 242
Cdd:PRK11231 211 LANGHVMAQGTPEEV 225
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
21-241 |
1.46e-18 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 84.45 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIK-----LRDRHLEGLAgqaiARMGVVrtFQHVRLFrE 95
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILidgvdIRDLTLESLR----RQIGVV--PQDTFLF-S 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 MTVIENLLVAQHQH--------LKSgvfAGLLKtpafrraeaealaraaeWLERV--GLLSMANRSAGNLAYGQQRRLEI 165
Cdd:COG1132 428 GTIRENIRYGRPDAtdeeveeaAKA---AQAHE-----------------FIEALpdGYDTVVGERGVNLSGGQRQRIAI 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPkETDEL--DHLIVELRDRhkvSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAE 241
Cdd:COG1132 488 ARALLKDPPILILDEATSALDT-ETEALiqEALERLMKGR---TTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEE 560
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
7-186 |
1.84e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 80.61 E-value: 1.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL---EGLAGQAIARMGV 83
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLdfqRDSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTFQHVrlfreMTVIENLLVAQHQHLKSGVFAGllktpafrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRL 163
Cdd:cd03231 81 APGIKTT-----LSVLENLRFWHADHSDEQVEEA---------------------LARVGLNGFEDRPVAQLSAGQQRRV 134
|
170 180
....*....|....*....|...
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLN 186
Cdd:cd03231 135 ALARLLLSGRPLWILDEPTTALD 157
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
5-214 |
2.00e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 83.95 E-value: 2.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARmgV 83
Cdd:TIGR02868 333 PTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR--R 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTF-QHVRLFrEMTVIENLLVAQHQHLKSGVFAGLLKtpafrraeaealARAAEWLERV--GLLSMANRSAGNLAYGQQ 160
Cdd:TIGR02868 411 VSVCaQDAHLF-DTTVRENLRLARPDATDEELWAALER------------VGLADWLRALpdGLDTVLGEGGARLSGGER 477
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHD 214
Cdd:TIGR02868 478 QRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITHH 529
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
6-242 |
3.60e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 81.21 E-value: 3.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLE-GLAGQAIARMGVV 84
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREMTVIENLLVAQHQHLksGVfagllktpafrrAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNL--GV------------PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVEL--RDRHkvsVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIvaQGNH---VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
6-242 |
4.75e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 81.29 E-value: 4.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF---GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-M 81
Cdd:PRK13642 4 ILEVENLVFKYekeSDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRkI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 GVVrtFQHV-RLFREMTV-------IENLLVAQHQHLKSgVFAGLLKtpafrraeaealaraaewlerVGLLSMANRSAG 153
Cdd:PRK13642 84 GMV--FQNPdNQFVGATVeddvafgMENQGIPREEMIKR-VDEALLA---------------------VNMLDFKTREPA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTP 233
Cdd:PRK13642 140 RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEI 218
|
....*....
gi 505189189 234 LAQGTPAEI 242
Cdd:PRK13642 219 IKEAAPSEL 227
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-242 |
1.04e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.16 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF--YRPS------------------------- 59
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTsgriiyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 60 -----GGTIKLRDRHLEGLAG-------QAIARMgVVRTFQhvrLFREMTVIENLLVAQHQHLKSGVFAgllktpafrra 127
Cdd:TIGR03269 81 pcpvcGGTLEPEEVDFWNLSDklrrrirKRIAIM-LQRTFA---LYGDDTVLDNVLEALEEIGYEGKEA----------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 128 eaeaLARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVS 207
Cdd:TIGR03269 146 ----VGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS 221
|
250 260 270
....*....|....*....|....*....|....*
gi 505189189 208 VLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:TIGR03269 222 MVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
16-231 |
1.44e-17 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 78.76 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 16 FGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI--------KLRDRHLEGLAGQaiarMGVVrtF 87
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIwfsghditRLKNREVPFLRRQ----IGMI--F 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QHVRLFREMTVIENLLV------AQHQHLKSGVFAGLlktpafrraeaealaraaewlERVGLLSMANRSAGNLAYGQQR 161
Cdd:PRK10908 86 QDHHLLMDRTVYDNVAIpliiagASGDDIRRRVSAAL---------------------DKVGLLDKAKNFPIQLSGGEQQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 162 RLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELrDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-246 |
1.47e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 79.75 E-value: 1.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF------YRPSGGTIkLRDRHLEGLAG 75
Cdd:PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMndkvsgYRYSGDVL-LGGRSIFNYRD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 QAIARMGVVRTFQHVRLFrEMTVIENLL--VAQHQHLKSGVFAGLLKTPafrraeaealaraaewLERVGLL-SMANR-- 150
Cdd:PRK14271 96 VLEFRRRVGMLFQRPNPF-PMSIMDNVLagVRAHKLVPRKEFRGVAQAR----------------LTEVGLWdAVKDRls 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 -SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhkVSVLLIEHDMKLVMGISDRIYVVN 229
Cdd:PRK14271 159 dSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFF 236
|
250
....*....|....*..
gi 505189189 230 QGTPLAQGTPAEIRNNP 246
Cdd:PRK14271 237 DGRLVEEGPTEQLFSSP 253
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-246 |
1.61e-17 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 79.45 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 3 VQPLLQVEGLSMRF---GGLL------AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLE-- 71
Cdd:PRK15112 1 VETLLEVRNLSKTFryrTGWFrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 72 --GLAGQAIaRMgvvrtfqhvrLFREMTVIENLLVAQHQHLKsgvFAGLLKTpafRRAEAEALARAAEWLERVGLL-SMA 148
Cdd:PRK15112 81 dySYRSQRI-RM----------IFQDPSTSLNPRQRISQILD---FPLRLNT---DLEPEQREKQIIETLRQVGLLpDHA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 149 NRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVV 228
Cdd:PRK15112 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223
|
250
....*....|....*...
gi 505189189 229 NQGTPLAQGTPAEIRNNP 246
Cdd:PRK15112 224 HQGEVVERGSTADVLASP 241
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-231 |
1.84e-17 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 79.35 E-value: 1.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF--GGLLA-------VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAG 75
Cdd:PRK10419 2 TLLNVSGLSHHYahGGLSGkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 QAIA--RMGVVRTFQH-VRLFREMTVIENLLVAQHQHLKSGVFAGllktpafrraeaeALARAAEWLERVGL-LSMANRS 151
Cdd:PRK10419 82 AQRKafRRDIQMVFQDsISAVNPRKTVREIIREPLRHLLSLDKAE-------------RLARASEMLRAVDLdDSVLDKR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK10419 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-238 |
2.14e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 81.02 E-value: 2.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF--GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-AR 80
Cdd:PRK11160 336 QVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALrQA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRtfQHVRLFREmTVIENLLVAQHQ----HLkSGVfagllktpafrraeaealaraaewLERVGLLSMANRSAG--- 153
Cdd:PRK11160 416 ISVVS--QRVHLFSA-TLRDNLLLAAPNasdeAL-IEV------------------------LQQVGLEKLLEDDKGlna 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 -------NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKvSVLLIEHDMKLvMGISDRIY 226
Cdd:PRK11160 468 wlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNK-TVLMITHRLTG-LEQFDRIC 544
|
250
....*....|..
gi 505189189 227 VVNQGTPLAQGT 238
Cdd:PRK11160 545 VMDNGQIIEQGT 556
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
20-242 |
3.10e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 78.98 E-value: 3.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR--DRHLEGLAGQAIARMGVVrtFQH-----VRL 92
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDglDTSDEENLWDIRNKAGMV--FQNpdnqiVAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 93 FREMTVI---ENLLVAQHQhLKSGVfagllktpafrraeaealaraAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCM 169
Cdd:PRK13633 102 IVEEDVAfgpENLGIPPEE-IRERV---------------------DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505189189 170 VTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
7-232 |
3.29e-17 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 75.95 E-value: 3.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglagqaiarmgvvrt 86
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW--------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 fqhvrlfremtvienllvaqHQHLKSGVFAgllktpafrraeaealaraaewlervgLLSManrsagnlayGQQRRLEIA 166
Cdd:cd03221 60 --------------------GSTVKIGYFE---------------------------QLSG----------GEKMRLALA 82
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 167 RCMVTRPELLMLDEPaaglnpkeTDELD-----HLIVELRDrHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:cd03221 83 KLLLENPNLLLLDEP--------TNHLDlesieALEEALKE-YPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
7-231 |
3.34e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 80.43 E-value: 3.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMrfgglLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL------EGLAgQAIAR 80
Cdd:PRK10762 258 LKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvtrspqDGLA-NGIVY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRtfQHVRLFREMTVIENL-LVA-----------QHQHLKSGV--FAGL--LKTPafrraeaealaraaewlervgl 144
Cdd:PRK10762 332 ISEDR--KRDGLVLGMSVKENMsLTAlryfsraggslKHADEQQAVsdFIRLfnIKTP---------------------- 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 lSMaNRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDR 224
Cdd:PRK10762 388 -SM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK-AEGLSIILVSSEMPEVLGMSDR 464
|
....*..
gi 505189189 225 IYVVNQG 231
Cdd:PRK10762 465 ILVMHEG 471
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-252 |
3.39e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 78.05 E-value: 3.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVAL---------TLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSGGTIKLRDRHLEGLAGQAIARMgvvRTF--Q 88
Cdd:PRK03695 1 MQLNDVAVstrlgplsaEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARH---RAYlsQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 89 HVRLFREMTVIENLLVAQHQHLKSGVFAGLLKTPAfrraeaealaraaewlERVGLLSMANRSAGNLAYGQ-QR-RLeIA 166
Cdd:PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVA----------------EALGLDDKLGRSVNQLSGGEwQRvRL-AA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPE------LLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPA 240
Cdd:PRK03695 140 VVLQVWPDinpagqLLLLDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
250
....*....|..
gi 505189189 241 EIRNNPDVIRAY 252
Cdd:PRK03695 219 EVLTPENLAQVF 230
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
24-251 |
3.50e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 80.54 E-value: 3.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIarmgvvRTFQHVRLFREMTvienlL 103
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD--------GVPL------VQYDHHYLHRQVA-----L 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 104 VAQHQHLKSGVFA-----GLLKTPAFRRAEAEALARAAEWLERV--GLLSMANRSAGNLAYGQQRRLEIARCMVTRPELL 176
Cdd:TIGR00958 560 VGQEPVLFSGSVReniayGLTDTPDEEIMAAAKAANAHDFIMEFpnGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 177 MLDEPAAGLNPketdELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEIRNNPDVIRA 251
Cdd:TIGR00958 640 ILDEATSALDA----ECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
7-254 |
3.97e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 78.49 E-value: 3.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVVR 85
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARrIGLLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 tfQHVRLFREMTVIENLLVAQHQHlksgvfagllkTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:PRK10253 88 --QNATTPGDITVQELVARGRYPH-----------QPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRnN 245
Cdd:PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV-T 233
|
....*....
gi 505189189 246 PDVIRAYLG 254
Cdd:PRK10253 234 AELIERIYG 242
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
19-246 |
4.19e-17 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 79.37 E-value: 4.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 19 LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI--ARMGVVRTFQH--VRLFR 94
Cdd:PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWraVRSDIQMIFQDplASLNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EMTV---IENLLVAQHQHL-----KSGVFAGLLKtpafrraeaealaraaewlerVGLL-SMANRSAGNLAYGQQRRLEI 165
Cdd:PRK15079 114 RMTIgeiIAEPLRTYHPKLsrqevKDRVKAMMLK---------------------VGLLpNLINRYPHEFSGGQCQRIGI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:PRK15079 173 ARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
.
gi 505189189 246 P 246
Cdd:PRK15079 253 P 253
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
21-242 |
4.64e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 78.25 E-value: 4.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLA-----GQAIARMGVVRTFQHVRLFRE 95
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkdiKQIRKKVGLVFQFPESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 mTVIENLLVAQHQhlksgvfagllktpaFRRAEAEALARAAEWLERVGLL-SMANRSAGNLAYGQQRRLEIARCMVTRPE 174
Cdd:PRK13649 102 -TVLKDVAFGPQN---------------FGVSQEEAEALAREKLALVGISeSLFEKNPFELSGGQMRRVAIAGILAMEPK 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 175 LLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13649 166 ILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
6-199 |
6.58e-17 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 76.38 E-value: 6.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMGVvr 85
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ--------GEPIRRQRD-- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQHVRLF--------REMTVIENLLVAQHQHLKSGVFAgllktpafrraeaealaraaEW--LERVGLLSMANRSAGNL 155
Cdd:PRK13538 71 EYHQDLLYlghqpgikTELTALENLRFYQRLHGPGDDEA--------------------LWeaLAQVGLAGFEDVPVRQL 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVE 199
Cdd:PRK13538 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-231 |
9.28e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 78.92 E-value: 9.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMR-FGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:COG3845 256 VVLEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VrtfqHV---RLFR----EMTVIENLLVAQHqhlksgvfagllKTPAFrraeaealaRAAEWLERVGLLSMANR------ 150
Cdd:COG3845 336 A----YIpedRLGRglvpDMSVAENLILGRY------------RRPPF---------SRGGFLDRKAIRAFAEElieefd 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 --------SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGIS 222
Cdd:COG3845 391 vrtpgpdtPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALS 469
|
....*....
gi 505189189 223 DRIYVVNQG 231
Cdd:COG3845 470 DRIAVMYEG 478
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-251 |
1.19e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 76.66 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVVRT 86
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKrLAILRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 FQHV--RLfremTVIEnlLVA--------------QHQHLKSGvfagllktpafrraeaealaraaewLERVGLLSMANR 150
Cdd:COG4604 83 ENHInsRL----TVRE--LVAfgrfpyskgrltaeDREIIDEA-------------------------IAYLDLEDLADR 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 151 SAGNLAYGQQRRLEIArcMV----TrpELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIY 226
Cdd:COG4604 132 YLDELSGGQRQRAFIA--MVlaqdT--DYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIV 207
|
250 260
....*....|....*....|....*
gi 505189189 227 VVNQGTPLAQGTPAEIRnNPDVIRA 251
Cdd:COG4604 208 AMKDGRVVAQGTPEEII-TPEVLSD 231
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
21-250 |
1.33e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 77.15 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGT--------IKLRDRHLEGLAgqaiARMGVVrtFQHV-R 91
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskitvdgITLTAKTVWDIR----EKVGIV--FQNPdN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 92 LFREMTV-------IENLLVAQHQHLKsgvfagllktpafrraeaealaRAAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:PRK13640 96 QFVGATVgddvafgLENRAVPRPEMIK----------------------IVRDVLADVGMLDYIDSEPANLSGGQKQRVA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEIRN 244
Cdd:PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFS 232
|
....*.
gi 505189189 245 NPDVIR 250
Cdd:PRK13640 233 KVEMLK 238
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
7-242 |
2.89e-16 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 75.65 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRfGGLLAVNnvaLTLNEGEIVSLIGPNGAGKTTVFNCLTGFYrPSGGTIKLRDRHLEGLAGQAIARMgvvRT 86
Cdd:COG4138 1 LQLNDVAVA-GRLGPIS---AQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARH---RA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 87 F--QHVRLFREMTVIENLLVAQHQHLKSGVFAGLLktpafrraeaealaraAEWLERVGLLSMANRSAGNLAYGQQRRLE 164
Cdd:COG4138 73 YlsQQQSPPFAMPVFQYLALHQPAGASSEAVEQLL----------------AQLAEALGLEDKLSRPLTQLSGGEWQRVR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 165 IARCMVT-------RPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:COG4138 137 LAAVLLQvwptinpEGQLLLLDEPMNSLDVAQQAALDRLLRELCQQ-GITVVMSSHDLNHTLRHADRVWLLKQGKLVASG 215
|
....*
gi 505189189 238 TPAEI 242
Cdd:COG4138 216 ETAEV 220
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
21-241 |
3.80e-16 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 74.96 E-value: 3.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIAR-MGVVRtfQHVRLFREmTVI 99
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRqIGLVS--QDVFLFND-TVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLLVAQHQHLKSGVFAGLLKTPAfrraeaealaraAEWLERV--GLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLM 177
Cdd:cd03251 94 ENIAYGRPGATREEVEEAARAANA------------HEFIMELpeGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 178 LDEPAAGLNpKET-----DELDHLiveLRDRhkvSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03251 162 LDEATSALD-TESerlvqAALERL---MKNR---TTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
3-242 |
4.73e-16 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 77.06 E-value: 4.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 3 VQPLLQVEGLSMRFGG--LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIaR 80
Cdd:TIGR02203 327 ARGDVEFRNVTFRYPGrdRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL-R 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRLFREmTVIENLlvaqhqhlksgvfagllktpAFRRAEAEALARAAEWLERVGLLSMANRS--------- 151
Cdd:TIGR02203 406 RQVALVSQDVVLFND-TIANNI--------------------AYGRTEQADRAEIERALAAAYAQDFVDKLplgldtpig 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 --AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGL-NPKE---TDELDHLiveLRDRhkvSVLLIEHDMKLVMGiSDRI 225
Cdd:TIGR02203 465 enGVLLSGGQRQRLAIARALLKDAPILILDEATSALdNESErlvQAALERL---MQGR---TTLVIAHRLSTIEK-ADRI 537
|
250
....*....|....*..
gi 505189189 226 YVVNQGTPLAQGTPAEI 242
Cdd:TIGR02203 538 VVMDDGRIVERGTHNEL 554
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
10-231 |
5.71e-16 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 76.69 E-value: 5.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 10 EGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRTFQH 89
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 90 VRLFREMTVIENLLVAQHQhlKSGVFAGLLK----TPAFrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLEI 165
Cdd:PRK10982 82 LNLVLQRSVMDNMWLGRYP--TKGMFVDQDKmyrdTKAI--------------FDELDIDIDPRAKVATLSVSQMQMIEI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 166 ARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
6-223 |
7.31e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 74.82 E-value: 7.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCltgFYR-----PSG---GTIKLRDRHLEGLAGQA 77
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRC---FNRlndliPGFrveGKVTFHGKNLYAPDVDP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 78 IA---RMGVVrtFQHVRLFREmTVIENLLVAQHQHLKSGVFAGLLKTpafrraeaeALARAAEWLERVGLLsmaNRSAGN 154
Cdd:PRK14243 87 VEvrrRIGMV--FQKPNPFPK-SIYDNIAYGARINGYKGDMDELVER---------SLRQAALWDEVKDKL---KQSGLS 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGISD 223
Cdd:PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSD 218
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
8-254 |
9.28e-16 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 74.44 E-value: 9.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMgVVRTF 87
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK-VAYLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QHVRLFREMTVIEnlLVAQHQHLKSGvfagllktpAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIAR 167
Cdd:PRK10575 92 QQLPAAEGMTVRE--LVAIGRYPWHG---------ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 168 CMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRnNPD 247
Cdd:PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM-RGE 239
|
....*..
gi 505189189 248 VIRAYLG 254
Cdd:PRK10575 240 TLEQIYG 246
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-246 |
1.07e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 75.90 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF---GGLL--------AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRpSGGTIKLRDRHLEG 72
Cdd:PRK15134 273 SPLLDVEQLQVAFpirKGILkrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 LAGQAI----ARMGVVrtFQ------HVRLFREMTVIENLLVaqHQHLKSGvfagllktpafrraeAEALARAAEWLERV 142
Cdd:PRK15134 352 LNRRQLlpvrHRIQVV--FQdpnsslNPRLNVLQIIEEGLRV--HQPTLSA---------------AQREQQVIAVMEEV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 143 GL-LSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGI 221
Cdd:PRK15134 413 GLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL 492
|
250 260
....*....|....*....|....*
gi 505189189 222 SDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK15134 493 CHQVIVLRQGEVVEQGDCERVFAAP 517
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-238 |
1.94e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.82 E-value: 1.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglAGQAIArMGVVRTFQHVRLFREMTVIE 100
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATV--------AGKSIL-TNISDVHQNMGYCPQFDAID 2024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLLVAQhQHLKsgVFAGLLKTPAfrraeaEALARAAEW-LERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLD 179
Cdd:TIGR01257 2025 DLLTGR-EHLY--LYARLRGVPA------EEIEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 180 EPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGT 238
Cdd:TIGR01257 2096 EPTTGMDPQARRMLWNTIVSII-REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
22-242 |
2.05e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 74.00 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRP-SGGTIKLRDRHLEGLAGQAIARMGVVrtFQHV-RLFREMTV- 98
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAeSGQIIIDGDLLTEENVWDIRHKIGMV--FQNPdNQFVGATVe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 ------IENLLVAqHQHLKSGVfagllktpafrraeaealaraAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTR 172
Cdd:PRK13650 101 ddvafgLENKGIP-HEEMKERV---------------------NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 173 PELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVmGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
7-231 |
2.07e-15 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 71.86 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLA--VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKlrdrhLEGLAGQAIARMGVV 84
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----LDGADISQWDPNELG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTF----QHVRLFrEMTVIENLLvaqhqhlkSGvfagllktpafrraeaealaraaewlervgllsmanrsagnlayGQQ 160
Cdd:cd03246 76 DHVgylpQDDELF-SGSIAENIL--------SG--------------------------------------------GQR 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVmGISDRIYVVNQG 231
Cdd:cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDG 171
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
24-231 |
3.21e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 74.76 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-----GVVrtFQHVRLFREMTV 98
Cdd:PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLrrehfGFI--FQRYHLLSHLTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 IENLLVAqhqhlksGVFAGLLKTpafrraeaEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLML 178
Cdd:PRK10535 104 AQNVEVP-------AVYAGLERK--------QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 505189189 179 DEPAAGLNPKETDELDHLIVELRDR-HkvSVLLIEHDmKLVMGISDRIYVVNQG 231
Cdd:PRK10535 169 DEPTGALDSHSGEEVMAILHQLRDRgH--TVIIVTHD-PQVAAQAERVIEIRDG 219
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
20-231 |
3.32e-15 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 72.50 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEglagqaiarmgvvrTFQHVRLFREMTVI 99
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS--------------QYEHKYLHSKVSLV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLLVAQHQHLKSGVFAGLLKTPAFRRAEAEALARAAEWLERV--GLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLM 177
Cdd:cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELasGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 505189189 178 LDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGiSDRIYVVNQG 231
Cdd:cd03248 174 LDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGG 224
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-246 |
3.79e-15 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 74.51 E-value: 3.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRF---GGLL--------AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEG 72
Cdd:PRK10261 311 EPILQVRNLVTRFplrSGLLnrvtrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 73 LAGQAIA--RMGVVRTFQ--HVRLFREMTVIENLLVAQHQHlksgvfaGLLKTPAfrraeaeaLARAAEWL-ERVGLL-S 146
Cdd:PRK10261 391 LSPGKLQalRRDIQFIFQdpYASLDPRQTVGDSIMEPLRVH-------GLLPGKA--------AAARVAWLlERVGLLpE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 147 MANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIY 226
Cdd:PRK10261 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA 535
|
250 260
....*....|....*....|
gi 505189189 227 VVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK10261 536 VMYLGQIVEIGPRRAVFENP 555
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
21-246 |
6.72e-15 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 71.63 E-value: 6.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRP----SGGTIKLRDRHLEGLA--GQAIARMgvvrtFQHvrlfr 94
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSirGRHIATI-----MQN----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EMTVIENLLVAQHQHLKSGVFAGLLKTPAFRRAEAEalaraaewLERVGLLSMA---NRSAGNLAYGQQRRLEIARCMVT 171
Cdd:TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEA--------LEAVGLPDPEevlKKYPFQLSGGMLQRVMIALALLL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 172 RPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:TIGR02770 143 EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-241 |
9.94e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 71.84 E-value: 9.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhLEGLAGQAIA 79
Cdd:PRK15056 1 MMQQAGIVVNDVTVTWrNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI----LGQPTRQALQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 80 R--MGVVRTFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAfrraeAEALARAAEWLERVGLLSMANRSAGNLAY 157
Cdd:PRK15056 77 KnlVAYVPQSEEVDWSFPVLVEDVVMMGRYGHM------GWLRRAK-----KRDRQIVTAALARVDMVEFRHRQIGELSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 158 GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVnQGTPLAQG 237
Cdd:PRK15056 146 GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNLGSVTEFCDYTVMV-KGTVLASG 223
|
....
gi 505189189 238 tPAE 241
Cdd:PRK15056 224 -PTE 226
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
20-237 |
1.23e-14 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 69.65 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRtfQHVRLFrEMTVI 99
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN--QRPYLF-DTTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLlvaqhqhlksgvfagllktpafrraeaealaraaewlervgllsmANRSAGnlayGQQRRLEIARCMVTRPELLMLD 179
Cdd:cd03247 93 NNL---------------------------------------------GRRFSG----GERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 180 EPAAGLNPKETDELDHLIVE-LRDRhkvSVLLIEHDMKlvmGIS--DRIYVVNQGTPLAQG 237
Cdd:cd03247 124 EPTVGLDPITERQLLSLIFEvLKDK---TLIWITHHLT---GIEhmDKILFLENGKIIMQG 178
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-231 |
1.53e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 72.78 E-value: 1.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRfggllAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:PRK15439 266 APVLTVEDLTGE-----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 V---RTFQHVRLFREMTVIENLLVAQHQHLksgvfaGLLKTPAFRRAEaealaraaewLER----VGL-LSMANRSAGNL 155
Cdd:PRK15439 341 VylpEDRQSSGLYLDAPLAWNVCALTHNRR------GFWIKPARENAV----------LERyrraLNIkFNHAEQAARTL 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-VAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
7-242 |
2.29e-14 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 72.09 E-value: 2.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGG--LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHL----EGLAGQAIAR 80
Cdd:COG4618 331 LSVENLTVVPPGskRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLsqwdREELGRHIGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGvvrtfQHVRLFrEMTVIEN------------LLVAQhqhlKSGVFAGLLKTPAfrraeaealaraaewlervGLLSMA 148
Cdd:COG4618 411 LP-----QDVELF-DGTIAENiarfgdadpekvVAAAK----LAGVHEMILRLPD-------------------GYDTRI 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 149 NRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLvMGISDRIYVV 228
Cdd:COG4618 462 GEGGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSL-LAAVDKLLVL 539
|
250
....*....|....
gi 505189189 229 NQGTPLAQGTPAEI 242
Cdd:COG4618 540 RDGRVQAFGPRDEV 553
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-246 |
2.36e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 72.20 E-value: 2.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI-------KLRDRH 69
Cdd:PRK10261 7 LDARDVLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVqcdkmllRRRSRQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 70 LEGLAGQAIARMGVVRTFQHVRLFRE-MTVIENLLVAQHQHLKS-GVFAGLLKTPAFRRAEAEalaraaewLERVGL--- 144
Cdd:PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEpMTSLNPVFTVGEQIAESiRLHQGASREEAMVEAKRM--------LDQVRIpea 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 LSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDR 224
Cdd:PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238
|
250 260
....*....|....*....|..
gi 505189189 225 IYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK10261 239 VLVMYQGEAVETGSVEQIFHAP 260
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
22-237 |
2.49e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 69.12 E-value: 2.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGfYRPSG---GTIKL--RDRHLEGLAgqaiARMGVVRtfQHVRLFREM 96
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG-RRTGLgvsGEVLIngRPLDKRSFR----KIIGYVP--QDDILHPTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 97 TVIENLLvaqhqhlksgvFAGLLKtpafrraeaealaraaewlervgllsmanrsagNLAYGQQRRLEIARCMVTRPELL 176
Cdd:cd03213 98 TVRETLM-----------FAAKLR---------------------------------GLSGGERKRVSIALELVSNPSLL 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 177 MLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03213 134 FLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-237 |
3.05e-14 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 69.61 E-value: 3.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 19 LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGfyRPSGGTIklrdrhLEG---LAGQAIARMGVVRTFQHVRLFRe 95
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEGGGT------TSGqilFNGQPRKPDQFQKCVAYVRQDD- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 mTVIENLLVAQHQHlksgvFAGLLKTPAFRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPEL 175
Cdd:cd03234 91 -ILLPGLTVRETLT-----YTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 176 LMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
10-242 |
3.20e-14 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 69.82 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 10 EGLSMRFG--GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIkLRDRHLEGLAGQAIARMGVVRTF 87
Cdd:cd03252 4 EHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAWLRRQVGVVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QHVRLFREmTVIENLLVAQ-----HQHLKSGVFAG----LLKTPAfrraeaealaraaewlervGLLSMANRSAGNLAYG 158
Cdd:cd03252 83 QENVLFNR-SIRDNIALADpgmsmERVIEAAKLAGahdfISELPE-------------------GYDTIVGEQGAGLSGG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 159 QQRRLEIARCMVTRPELLMLDEPAAGLNPketdELDHLIveLRDRHKVS----VLLIEHDMKLVMGiSDRIYVVNQGTPL 234
Cdd:cd03252 143 QRQRIAIARALIHNPRILIFDEATSALDY----ESEHAI--MRNMHDICagrtVIIIAHRLSTVKN-ADRIIVMEKGRIV 215
|
....*...
gi 505189189 235 AQGTPAEI 242
Cdd:cd03252 216 EQGSHDEL 223
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-246 |
4.08e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 70.08 E-value: 4.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLegLAGQAIARMGVVR-------TFQHVRLFR 94
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVL--YFGKDIFQIDAIKlrkevgmVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EMTVIENLLVAQHQHlksgvfaGLLKTPAFRRAEAEALARAAEWLERVGLLsmaNRSAGNLAYGQQRRLEIARCMVTRPE 174
Cdd:PRK14246 104 HLSIYDNIAYPLKSH-------GIKEKREIKKIVEECLRKVGLWKEVYDRL---NSPASQLSGGQQQRLTIARALALKPK 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 175 LLMLDEPAAGLNPKETDELDHLIVELRDrhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
23-241 |
1.06e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 70.08 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTgFYRPSG----GTIKLRDRHLEglAGQAIARMGVVRtfQHVRLFREMTV 98
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGvkgsGSVLLNGMPID--AKEMRAISAYVQ--QDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 IENLLVAQHQHLKSGVFAgllktpafrraeAEALARAAEWLERVGLLSMANRSAG------NLAYGQQRRLEIARCMVTR 172
Cdd:TIGR00955 117 REHLMFQAHLRMPRRVTK------------KEKRERVDEVLQALGLRKCANTRIGvpgrvkGLSGGERKRLAFASELLTD 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 173 PELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAE 241
Cdd:TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
21-237 |
1.70e-13 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 67.61 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGVVRtfQHVRLF----RE 95
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLrRNIGYVP--QDVTLFygtlRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 MTVIENLLVAQHQHLKSGVFAGLL----KTPAfrraeaealaraaewlervGLLSMANRSAGNLAYGQQRRLEIARCMVT 171
Cdd:cd03245 97 NITLGAPLADDERILRAAELAGVTdfvnKHPN-------------------GLDLQIGERGRGLSGGQRQAVALARALLN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 172 RPELLMLDEPAAGL-NPKETDELDHLIVELRDRhkvSVLLIEHDMKLvMGISDRIYVVNQGTPLAQG 237
Cdd:cd03245 158 DPPILLLDEPTSAMdMNSEERLKERLRQLLGDK---TLIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
5-246 |
2.74e-13 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 68.21 E-value: 2.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKT-TVFnCLTGFYRPSG---GTIKLRDRHLEGLAGQ 76
Cdd:PRK09473 11 ALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAF-ALMGLLAANGrigGSATFNGREILNLPEK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 AIARMgvvRTFQHVRLFRE--------MTVIENLLVAQHQHlksgvfAGLLKTPAFRraeaealaraaewlERVGLLSM- 147
Cdd:PRK09473 90 ELNKL---RAEQISMIFQDpmtslnpyMRVGEQLMEVLMLH------KGMSKAEAFE--------------ESVRMLDAv 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 148 ----ANRSAG----NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVM 219
Cdd:PRK09473 147 kmpeARKRMKmyphEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVA 226
|
250 260
....*....|....*....|....*..
gi 505189189 220 GISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK09473 227 GICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
7-239 |
4.21e-13 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 66.36 E-value: 4.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF--GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrDrhleglaGQAIARMG-- 82
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI-D-------GVDISKIGlh 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 83 VVRTF-----QHVRLFrEMTVIENL------------LVAQHQHLKSGVFAGLLktpafrraeaealaraaewlervGLL 145
Cdd:cd03244 75 DLRSRisiipQDPVLF-SGTIRSNLdpfgeysdeelwQALERVGLKEFVESLPG-----------------------GLD 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 146 SMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPketdELDHLIVE-LRDR-HKVSVLLIEHDMKLVMGiSD 223
Cdd:cd03244 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP----ETDALIQKtIREAfKDCTVLTIAHRLDTIID-SD 205
|
250
....*....|....*.
gi 505189189 224 RIYVVNQGTPLAQGTP 239
Cdd:cd03244 206 RILVLDKGRVVEFDSP 221
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-247 |
5.65e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 66.79 E-value: 5.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTV---FNCLTGFYRPSG--GTIKLRDRHLEGLAGQAI-AR 80
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLELNEEARveGEVRLFGRNIYSPDVDPIeVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHVRLFREMTVIENL--------LVAQHQHLKSGVFAGLLKTpafrraeaealaraAEWLERVGLLsmaNRSA 152
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVaigvklngLVKSKKELDERVEWALKKA--------------ALWDEVKDRL---NDYP 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkvSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGK 225
|
250
....*....|....*
gi 505189189 233 PLAQGTPAEIRNNPD 247
Cdd:PRK14267 226 LIEVGPTRKVFENPE 240
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
22-237 |
6.01e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 67.98 E-value: 6.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSG--GTIKLRDRHlegLAGQAIARMGVVRtfQHVRLFREMTVI 99
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRK---PTKQILKRTGFVT--QDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLlvaqhqhlksgVFAGLLKTPAFRRAEAEALARAAEwLERVGLLSMANRSAGN-----LAYGQQRRLEIARCMVTRPE 174
Cdd:PLN03211 159 ETL-----------VFCSLLRLPKSLTKQEKILVAESV-ISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPS 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505189189 175 LLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
6-231 |
6.22e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 67.83 E-value: 6.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRfgGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVR 85
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQHVR---LFREMTVIENLLVAQHQHLKSGVfaGLLKTpafrraeaEALARAAEWL---ERVGLLSMANrSAGNLAYGQ 159
Cdd:PRK10982 328 VTEERRstgIYAYLDIGFNSLISNIRNYKNKV--GLLDN--------SRMKSDTQWVidsMRVKTPGHRT-QIGSLSGGN 396
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK10982 397 QQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK-GIIIISSEMPELLGITDRILVMSNG 467
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
22-231 |
9.60e-13 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 67.26 E-value: 9.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYR-PSGGTIKLRDRHLEGLA-GQAIA-----------RMGVVrtfq 88
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRNpQQAIAqgiamvpedrkRDGIV---- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 89 hvrlfREMTVIENLLVAQhqhLKSGVFAGLLKTPAfrraeaeALARAAEWLERVGL------LSMANRSAGNlaygQQRR 162
Cdd:PRK13549 354 -----PVMGVGKNITLAA---LDRFTGGSRIDDAA-------ELKTILESIQRLKVktaspeLAIARLSGGN----QQKA 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 163 LeIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHkVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK13549 415 V-LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG-VAIIVISSELPEVLGLSDRVLVMHEG 481
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
1-234 |
1.22e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 65.36 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFY--RPSGGTIKLRDRHLEglagqai 78
Cdd:COG2401 25 ERVAIVLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFG------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 armgvvrtfqhvrlfREMTVIENLLVAQHQHLKSGVfagllktpafrraeaealaraaewLERVGLLSMAN--RSAGNLA 156
Cdd:COG2401 98 ---------------REASLIDAIGRKGDFKDAVEL------------------------LNAVGLSDAVLwlRRFKELS 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGIS-DRIYVVNQGTPL 234
Cdd:COG2401 139 TGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVP 217
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-246 |
1.56e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 66.65 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRF--GGLL--AVNNVALTLNEGEIVSLIGPNGAGKT-TVFNCLTGFYRPS----GGTIKLR------ 66
Cdd:PRK15134 1 MTQPLLAIENLSVAFrqQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypSGDIRFHgesllh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 67 --DRHLEGLAGQAIARmgvvrtfqhvrLFREMTVIENLLVAQHQHLkSGVFA---GLLKTPAfrraeaeaLARAAEWLER 141
Cdd:PRK15134 81 asEQTLRGVRGNKIAM-----------IFQEPMVSLNPLHTLEKQL-YEVLSlhrGMRREAA--------RGEILNCLDR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 142 VGLLSMANRSAG---NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLV 218
Cdd:PRK15134 141 VGIRQAAKRLTDyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220
|
250 260
....*....|....*....|....*...
gi 505189189 219 MGISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK15134 221 RKLADRVAVMQNGRCVEQNRAATLFSAP 248
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
7-243 |
2.23e-12 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 65.91 E-value: 2.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAG--KTTVFNCLTGfyrPSGGTIKLRdrhlegLAGQAIARMGVV 84
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPWR------F*TWCANRRALR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFR-----EMTVIENLLVAqhqhlksGVFAGLLKTPAfrraeaeaLARAAEWLERVGLLSMANRSAGNLAYGQ 159
Cdd:NF000106 85 RTIG*HRPVR*grreSFSGRENLYMI-------GR*LDLSRKDA--------RARADELLERFSLTEAAGRAAAKYSGGM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 160 QRRLEIARCMVTRPELLMLDEPAAGLNPKETDEL-DHLIVELRDrhKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGT 238
Cdd:NF000106 150 RRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVwDEVRSMVRD--GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGK 227
|
....*
gi 505189189 239 PAEIR 243
Cdd:NF000106 228 VDELK 232
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
22-254 |
3.61e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 64.46 E-value: 3.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNC----LTGFYRPSG----GTIKLRDRHLEGLAGQAIARMGVVRTFQHVRLF 93
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPRGarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 94 rEMTVIENLLVAQHQHLKSGvfagllktpafRRAEAEALARAAEWLERVGLLSMANRSAGNLAYGQQRRLEIARCM---- 169
Cdd:PRK13547 97 -AFSAREIVLLGRYPHARRA-----------GALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlw 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 170 -----VTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRn 244
Cdd:PRK13547 165 pphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL- 243
|
250
....*....|
gi 505189189 245 NPDVIRAYLG 254
Cdd:PRK13547 244 TPAHIARCYG 253
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
16-246 |
4.07e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 65.05 E-value: 4.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 16 FGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGqaiARMGVVRTFQHVRLFRE 95
Cdd:PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQSYALYPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 96 MTVIENLLVAqhqhLKsgvFAGLLKTPAFRRAEAEAlaraaewlERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPEL 175
Cdd:PRK11000 90 LSVAENMSFG----LK---LAGAKKEEINQRVNQVA--------EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 176 LMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTpLAQ-GTPAEIRNNP 246
Cdd:PRK11000 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR-VAQvGKPLELYHYP 225
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
5-214 |
5.20e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 63.58 E-value: 5.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIaRMGVV 84
Cdd:PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY-RQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 RTFQHVRLFREmTVIENLLVA---QHQHLKSGVFAgllktpafrraeaealaraaEWLERVGL-LSMANRSAGNLAYGQQ 160
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLIFPwqiRNQQPDPAIFL--------------------DDLERFALpDTILTKNIAELSGGEK 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHD 214
Cdd:PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
24-256 |
5.60e-12 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 64.51 E-value: 5.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGlAGQAIA------RMGVVrtFQHVRLFREMT 97
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFD-AEKGIClppekrRIGYV--FQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIENLLVaqhqhlksgvfaGLLKTpafrraeaealaRAAEWLERVGLLSMA---NRSAGNLAYGQQRRLEIARCMVTRPE 174
Cdd:PRK11144 93 VRGNLRY------------GMAKS------------MVAQFDKIVALLGIEpllDRYPGSLSGGEKQRVAIGRALLTAPE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 175 LLMLDEPAAGLN-PKETDELDHLiVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEIRNNPdVIRAYL 253
Cdd:PRK11144 149 LLLMDEPLASLDlPRKRELLPYL-ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS-AMRPWL 226
|
...
gi 505189189 254 GEE 256
Cdd:PRK11144 227 PKE 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
22-231 |
6.05e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 64.85 E-value: 6.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPS-GGTIKLRDRHLEGLAGQAIARMGVVRTFQHVR---LFREMT 97
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKrhgIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIENLLVAQhqhLKSGVFAGLLKTPAfrraeaealaRAAEWLERVGLLSMANRSA----GNLAYGQQRRLEIARCMVTRP 173
Cdd:TIGR02633 356 VGKNITLSV---LKSFCFKMRIDAAA----------ELQIIGSAIQRLKVKTASPflpiGRLSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 174 ELLMLDEPAAGLNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
21-253 |
7.62e-12 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 63.18 E-value: 7.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRH---LEGLAGqaiarmgvvrtFQHvrlfrEMT 97
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRVsalLELGAG-----------FHP-----ELT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIEN---------LLVAQHQHLKSGV--FAGL---LKTPafrraeaealaraaewlerVGLLSmanrSagnlayGQQRRL 163
Cdd:COG1134 105 GRENiylngrllgLSRKEIDEKFDEIveFAELgdfIDQP-------------------VKTYS----S------GMRARL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEP-AAG---LNPKETDELDhlivELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTP 239
Cdd:COG1134 156 AFAVATAVDPDILLVDEVlAVGdaaFQKKCLARIR----ELRESGR-TVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
250
....*....|....
gi 505189189 240 AEirnnpdVIRAYL 253
Cdd:COG1134 231 EE------VIAAYE 238
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-187 |
8.26e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 64.65 E-value: 8.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFY--------------RPSGGTIKLRDRH 69
Cdd:PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHpqgysndltlfgrrRGSGETIWDIKKH 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 70 LeglagqaiarmGVVRTFQHVRlFREMTVIENLLVaqhqhlkSGVF--AGLlktpaFRRAEAEALARAAEWLERVGL-LS 146
Cdd:PRK10938 338 I-----------GYVSSSLHLD-YRVSTSVRNVIL-------SGFFdsIGI-----YQAVSDRQQKLAQQWLDILGIdKR 393
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 505189189 147 MANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNP 187
Cdd:PRK10938 394 TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP 434
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-229 |
8.96e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 62.87 E-value: 8.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQ 76
Cdd:PRK10584 1 MPAENIVEVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 AIARM---GVVRTFQHVRLFREMTVIENLlvaQHQHLKSGVFAGLLKTPAfrraeaealaraAEWLERVGLLSMANRSAG 153
Cdd:PRK10584 81 ARAKLrakHVGFVFQSFMLIPTLNALENV---ELPALLRGESSRQSRNGA------------KALLEQLGLGKRLDHLPA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVN 229
Cdd:PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-238 |
1.12e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 62.81 E-value: 1.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 28 TLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKlrdrhleglagqaIARMGVVRTFQHVRLFREMTVienllvaqh 107
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE-------------IELDTVSYKPQYIKADYEGTV--------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 108 QHLKSGVFAGLLKTPAFRRAEaealaraaewLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNP 187
Cdd:cd03237 79 RDLLSSITKDFYTHPYFKTEI----------AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 505189189 188 KETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIyVVNQGTPLAQGT 238
Cdd:cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL-IVFEGEPSVNGV 198
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-67 |
1.36e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.80 E-value: 1.36e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRD 67
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGE 383
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
6-254 |
1.62e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 62.70 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleGLAGQAIARMGVV 84
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS-----GIDTGDFSKLQGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 R-----TFQHVRL-FREMTVIENLLVAQHQhlksgvfaglLKTPAFRRAEAEALAraaewLERVGLLSMANRSAGNLAYG 158
Cdd:PRK13644 76 RklvgiVFQNPETqFVGRTVEEDLAFGPEN----------LCLPPIEIRKRVDRA-----LAEIGLEKYRHRSPKTLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 159 QQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKlVMGISDRIYVVNQGTPLAQGT 238
Cdd:PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK-TIVYITHNLE-ELHDADRIIVMDRGKIVLEGE 218
|
250
....*....|....*.
gi 505189189 239 PAEIRNNPDVirAYLG 254
Cdd:PRK13644 219 PENVLSDVSL--QTLG 232
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-243 |
2.62e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 63.26 E-value: 2.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 28 TLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRhleglagqaiarmgVVRTFQHVRLFREMTVIENLlvaqH 107
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK--------------ISYKPQYISPDYDGTVEEFL----R 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 108 QHLKSGVFAGLLKTpafrraeaealaraaEWLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAglnp 187
Cdd:COG1245 424 SANTDDFGSSYYKT---------------EIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA---- 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 188 ketdeldHLIVELR-----------DRHKVSVLLIEHDMKLVMGISDRIYVVNqGTPLAQGT---PAEIR 243
Cdd:COG1245 485 -------HLDVEQRlavakairrfaENRGKTAMVVDHDIYLIDYISDRLMVFE-GEPGVHGHasgPMDMR 546
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
7-65 |
2.96e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 62.83 E-value: 2.96e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL 65
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
23-241 |
5.08e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 61.02 E-value: 5.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI-----KLRDRHLEGLAGQaiarMGVVRtfQHVRLFrEMT 97
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIlldgvDIRDLNLRWLRSQ----IGLVS--QEPVLF-DGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 98 VIENLLVAQHQHLKSGVFAGLLKTPA--FRRAEAEalaraaewlervGLLSMANRSAGNLAYGQQRRLEIARCMVTRPEL 175
Cdd:cd03249 93 IAENIRYGKPDATDEEVEEAAKKANIhdFIMSLPD------------GYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505189189 176 LMLDEpaaglnpkETDELD----HLIVELRDRHKVS--VLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03249 161 LLLDE--------ATSALDaeseKLVQEALDRAMKGrtTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
149-256 |
8.07e-11 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 61.77 E-value: 8.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 149 NRSAGNLAYGQQRRLEIARCMvtRPELL----MLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVmGISDR 224
Cdd:PRK00635 471 ERALATLSGGEQERTALAKHL--GAELIgityILDEPSIGLHPQDTHKLINVIKKLRDQGN-TVLLVEHDEQMI-SLADR 546
|
90 100 110
....*....|....*....|....*....|....*....
gi 505189189 225 IYVVNQGTP------LAQGTPAEIRNNPDVIRA-YLGEE 256
Cdd:PRK00635 547 IIDIGPGAGifggevLFNGSPREFLAKSDSLTAkYLRQE 585
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
21-66 |
1.07e-10 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 59.85 E-value: 1.07e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR 66
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
18-256 |
2.25e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 60.24 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 18 GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF--YRpsgGTIKLRDRHLEGLA----GQAIARMGvvrtfQHVR 91
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFlpYQ---GSLKINGIELRELDpeswRKHLSWVG-----QNPQ 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 92 LFrEMTVIENLLVAQHQHLKSGVFAGLLKTPA--FRRAEAEalaraaewlervGLLSMANRSAGNLAYGQQRRLEIARCM 169
Cdd:PRK11174 434 LP-HGTLRDNVLLGNPDASDEQLQQALENAWVseFLPLLPQ------------GLDTPIGDQAAGLSVGQAQRLALARAL 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 170 VTRPELLMLDEPAAGLNPK-ETDELDHLIVELRDRhkvSVLLIEH---DMKLVmgisDRIYVVNQGTPLAQGTPAEIRNN 245
Cdd:PRK11174 501 LQPCQLLLLDEPTASLDAHsEQLVMQALNAASRRQ---TTLMVTHqleDLAQW----DQIWVMQDGQIVQQGDYAELSQA 573
|
250
....*....|.
gi 505189189 246 PDVIRAYLGEE 256
Cdd:PRK11174 574 GGLFATLLAHR 584
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-231 |
2.62e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.88 E-value: 2.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF--YRPSGGTIKLRDRHLEGLAGQAI 78
Cdd:CHL00131 2 NKNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDILFKGESILDLEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 ARMGVVRTFQHVRLFREMTVIENLLVAQHQHLKsgvFAGL--LKTPAFRRAEAEAlaraaewLERVGL-LSMANRSAGN- 154
Cdd:CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRK---FQGLpeLDPLEFLEIINEK-------LKLVGMdPSFLSRNVNEg 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGIS-DRIYVVNQG 231
Cdd:CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHYQRLLDYIKpDYVHVMQNG 228
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
7-239 |
3.11e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 58.19 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLL--AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMGVv 84
Cdd:cd03369 7 IEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEID--------GIDISTIPL- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtfqhVRLFREMTVIenllvAQHQHLksgvFAGLLKT--PAFRRAEAEalaraaewlERVGLLSMANrSAGNLAYGQQRR 162
Cdd:cd03369 78 -----EDLRSSLTII-----PQDPTL----FSGTIRSnlDPFDEYSDE---------EIYGALRVSE-GGLNLSQGQRQL 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 163 LEIARCMVTRPELLMLDEPAAGLNPketdELDHLIVE-LRDR-HKVSVLLIEHDMKLVMGIsDRIYVVNQGTPLAQGTP 239
Cdd:cd03369 134 LCLARALLKRPRVLVLDEATASIDY----ATDALIQKtIREEfTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-64 |
4.23e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 59.52 E-value: 4.23e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 505189189 7 LQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIK 64
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
23-241 |
7.19e-10 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 57.63 E-value: 7.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARM-GVVRtfQHVRLFREmTVIEN 101
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAiGVVP--QDTVLFND-TIGYN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 102 LLVAQHQHLKSGVFAGLLKTPAFRRAEAEALARAAEWLERvGLlsmanrsagNLAYGQQRRLEIARCMVTRPELLMLDEP 181
Cdd:cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER-GL---------KLSGGEKQRVAIARAILKNPPILLLDEA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 182 AAGLN-PKETDELDHLIVELRDRhkvSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAE 241
Cdd:cd03253 165 TSALDtHTEREIQAALRDVSKGR---TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-231 |
7.81e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 58.64 E-value: 7.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 22 VNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRTFQHVR---LFREMTV 98
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 99 IENLLVAqhQHLKSGVFAGLLKTpaFRRAEAEALARAAEWLERVGLLSMaNRSAGNLAYGQQRRLEIARCMVTRPELLML 178
Cdd:PRK09700 359 AQNMAIS--RSLKDGGYKGAMGL--FHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLISKWLCCCPEVIIF 433
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 505189189 179 DEPAAGLNPKETDELDHLIVELRDRHKVsVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK09700 434 DEPTRGIDVGAKAEIYKVMRQLADDGKV-ILMVSSELPEIITVCDRIAVFCEG 485
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-238 |
9.27e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 58.58 E-value: 9.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 4 QPL----LQVEGLSMRF-GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI 78
Cdd:PRK10790 334 RPLqsgrIDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 79 aRMGVVRT-----------FQHVRLFREMT---VIENLLVAQhqhlksgvFAGLLKT-PAfrraeaealaraaewlervG 143
Cdd:PRK10790 414 -RQGVAMVqqdpvvladtfLANVTLGRDISeeqVWQALETVQ--------LAELARSlPD-------------------G 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 144 LLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhkVSVLLIEHDMKLVMGiSD 223
Cdd:PRK10790 466 LYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-AD 542
|
250
....*....|....*
gi 505189189 224 RIYVVNQGTPLAQGT 238
Cdd:PRK10790 543 TILVLHRGQAVEQGT 557
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
234-256 |
9.79e-10 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 52.25 E-value: 9.79e-10
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
2-243 |
1.99e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.51 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 2 SVQPLLQVEGLSMRFGGL-LAVNnvALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRhleglagqaiar 80
Cdd:PRK13409 336 ERETLVEYPDLTKKLGDFsLEVE--GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK------------ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 mgVVRTFQHVRLFREMTViENLLVAQHQHLKSGVFAGLLktpafrraeaealaraaewLERVGLLSMANRSAGNLAYGQQ 160
Cdd:PRK13409 402 --ISYKPQYIKPDYDGTV-EDLLRSITDDLGSSYYKSEI-------------------IKPLQLERLLDKNVKDLSGGEL 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 161 RRLEIARCMVTRPELLMLDEPAAglnpketdeldHLIVELR-----------DRHKVSVLLIEHDMKLVMGISDRIyVVN 229
Cdd:PRK13409 460 QRVAIAACLSRDADLYLLDEPSA-----------HLDVEQRlavakairriaEEREATALVVDHDIYMIDYISDRL-MVF 527
|
250
....*....|....*..
gi 505189189 230 QGTPLAQGT---PAEIR 243
Cdd:PRK13409 528 EGEPGKHGHasgPMDMR 544
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
7-231 |
2.38e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 57.23 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSmrfGGLLAvNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLE-GLAGQAIaRMGVV- 84
Cdd:PRK11288 258 LRLDGLK---GPGLR-EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAI-RAGIMl 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 ----RTFQHVRLFRemTVIENL-LVAQHQHLKsgvfAGLLKTPAFRRAEAEalaraaewlERVGLLSMANRSA----GNL 155
Cdd:PRK11288 333 cpedRKAEGIIPVH--SVADNInISARRHHLR----AGCLINNRWEAENAD---------RFIRSLNIKTPSReqliMNL 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREG 472
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
8-243 |
2.99e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.06 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIK-----LRDRHLEGLAGQAIARM- 81
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEvlggdMADARHRRAVCPRIAYMp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 82 -GVVRTfqhvrLFREMTVIENL-----LVAQHQHLKSGVFAGLLKtpafrraeaealaraaewleRVGLLSMANRSAGNL 155
Cdd:NF033858 83 qGLGKN-----LYPTLSVFENLdffgrLFGQDAAERRRRIDELLR--------------------ATGLAPFADRPAGKL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELR-DRHKVSVLLIEHDMK-------LVMgisdriyv 227
Cdd:NF033858 138 SGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRaERPGMSVLVATAYMEeaerfdwLVA-------- 209
|
250
....*....|....*.
gi 505189189 228 VNQGTPLAQGTPAEIR 243
Cdd:NF033858 210 MDAGRVLATGTPAELL 225
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1-197 |
3.73e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 55.24 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSVQPLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIklrdrHLEGLAGQAIAR 80
Cdd:PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI-----QIDGKTATRGDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 MGVVRTFQHV-RLFREMTVIENL--LVAQH-QHLKsgvfagllKTPAFRraeaealaraaewLERVGLLSMANRSAGNLA 156
Cdd:PRK13543 81 SRFMAYLGHLpGLKADLSTLENLhfLCGLHgRRAK--------QMPGSA-------------LAIVGLAGYEDTLVRQLS 139
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 505189189 157 YGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLI 197
Cdd:PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
20-242 |
4.31e-09 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 56.57 E-value: 4.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI-----KLRDRHLEGLAGQaiarMGVVRtfQHVRLFR 94
Cdd:PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIlldghDLRDYTLASLRNQ----VALVS--QNVHLFN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 95 EmTVIENLLVAQHQHlksgvfagllktpaFRRAEAEALARAAEWLERV-----GLLSMANRSAGNLAYGQQRRLEIARCM 169
Cdd:PRK11176 431 D-TIANNIAYARTEQ--------------YSREQIEEAARMAYAMDFInkmdnGLDTVIGENGVLLSGGQRQRIAIARAL 495
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 170 VTRPELLMLDEPAAGLNPKETDELDHLIVELR-DRhkvSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQkNR---TSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAEL 565
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
6-246 |
5.24e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 55.90 E-value: 5.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGG----LLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFY----RPSGGTIKLRDRHLEGLAG-- 75
Cdd:PRK11022 3 LLNVDKLSVHFGDesapFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISEke 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 -QAIARMGVVRTFQHvrlfrEMT-----------VIENLLVaqHQhlksgvfAGLLKTpafrraeaeALARAAEWLERVG 143
Cdd:PRK11022 83 rRNLVGAEVAMIFQD-----PMTslnpcytvgfqIMEAIKV--HQ-------GGNKKT---------RRQRAIDLLNQVG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 144 LLSMANR---SAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMG 220
Cdd:PRK11022 140 IPDPASRldvYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
|
250 260
....*....|....*....|....*.
gi 505189189 221 ISDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK11022 220 AAHKIIVMYAGQVVETGKAHDIFRAP 245
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
5-246 |
1.21e-08 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 54.53 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPS----GGTIKLRDRHLEGLAGQ 76
Cdd:COG4170 2 PLLDIRNLTIEIdtpqGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 A----IAR-MGVVrtFQHVR--LFREMTVIENLLvaqhQHLKSGVFAGllktpAFRRAEAEALARAAEWLERVGL---LS 146
Cdd:COG4170 82 ErrkiIGReIAMI--FQEPSscLDPSAKIGDQLI----EAIPSWTFKG-----KWWQRFKWRKKRAIELLHRVGIkdhKD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 147 MANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIY 226
Cdd:COG4170 151 IMNSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTIT 230
|
250 260
....*....|....*....|
gi 505189189 227 VVNQGTPLAQGTPAEIRNNP 246
Cdd:COG4170 231 VLYCGQTVESGPTEQILKSP 250
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
3-238 |
1.50e-08 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 54.97 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 3 VQPLLQVEGLSMRFGGLL-AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL-----RDRHLEGLAgQ 76
Cdd:PRK13657 331 VKGAVEFDDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIdgtdiRTVTRASLR-R 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 AIarmGVVrtFQHVRLFREmTVIENLLVAQHQHLKSGVFAGLLKTPAfrraeaealaraAEWLER--VGLLSMANRSAGN 154
Cdd:PRK13657 410 NI---AVV--FQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQA------------HDFIERkpDGYDTVVGERGRQ 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 155 LAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELrdRHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPL 234
Cdd:PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL--MKGRTTFIIAHRLSTVRN-ADRILVFDNGRVV 548
|
....
gi 505189189 235 AQGT 238
Cdd:PRK13657 549 ESGS 552
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
152-231 |
2.27e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.03 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:NF040905 402 VGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGK-GVIVISSELPELLGMCDRIYVMNEG 480
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
158-246 |
2.80e-08 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 53.43 E-value: 2.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 158 GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQG 237
Cdd:PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
|
....*....
gi 505189189 238 TPAEIRNNP 246
Cdd:PRK11308 238 TKEQIFNNP 246
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-246 |
2.86e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 53.65 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRF----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF----YRPSGGTIKLRDRHLEGLAGQ 76
Cdd:PRK15093 2 PLLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVtkdnWRVTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 77 AIARM---GVVRTFQHVR-LFREMTVIENLLVaqhQHLKSGVFAGllktpAFRRAEAEALARAAEWLERVGL---LSMAN 149
Cdd:PRK15093 82 ERRKLvghNVSMIFQEPQsCLDPSERVGRQLM---QNIPGWTYKG-----RWWQRFGWRKRRAIELLHRVGIkdhKDAMR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVN 229
Cdd:PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233
|
250
....*....|....*..
gi 505189189 230 QGTPLAQGTPAEIRNNP 246
Cdd:PRK15093 234 CGQTVETAPSKELVTTP 250
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
7-65 |
3.14e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 53.65 E-value: 3.14e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 7 LQVEGLSMRF-----GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL 65
Cdd:COG4615 328 LELRGVTYRYpgedgDEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILL 391
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
17-231 |
3.97e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 53.71 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 17 GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTI----KLR-----DRHLEGLAGQAIARMGVVRTF 87
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVfrsaKVRmavfsQHHVDGLDLSSNPLLYMMRCF 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QhvrlfremTVIENLLVAqhqHLKS-GVFAGLLKTPAFrraeaealaraaewlervgllsmanrsagNLAYGQQRRLEIA 166
Cdd:PLN03073 600 P--------GVPEQKLRA---HLGSfGVTGNLALQPMY-----------------------------TLSGGQKSRVAFA 639
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505189189 167 RCMVTRPELLMLDEPAaglNPKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISDRIYVVNQG 231
Cdd:PLN03073 640 KITFKKPHILLLDEPS---NHLDLDAVEALIQGLV-LFQGGVLMVSHDEHLISGSVDELWVVSEG 700
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
31-218 |
5.51e-08 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 51.84 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 31 EGEIVSLIGPNGAGKTTVFNC----LTGFYRPSGgtiKLRDrHLEGLAGQAiARMGVVR-TFQHVR-----LFREMTVIE 100
Cdd:cd03240 21 FSPLTLIVGQNGAGKTTIIEAlkyaLTGELPPNS---KGGA-HDPKLIREG-EVRAQVKlAFENANgkkytITRSLAILE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLLVAqHQhlksGVFAGLLktpafrraeaealaraaewLERVGLLSMANRSAGNLAYgqqrRLEIARCMVTRPELLMLDE 180
Cdd:cd03240 96 NVIFC-HQ----GESNWPL-------------------LDMRGRCSGGEKVLASLII----RLALAETFGSNCGILALDE 147
|
170 180 190
....*....|....*....|....*....|....*....
gi 505189189 181 PAAGLNPKETDELDHLIVELRDRHKVS-VLLIEHDMKLV 218
Cdd:cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFqLIVITHDEELV 186
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
31-256 |
6.29e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.98 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 31 EGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRD------RHLEGLAGQAI------ARMGVVRTFQHVRLFREM-- 96
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPdwdeilDEFRGSELQNYftklleGDVKVIVKPQYVDLIPKAvk 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 97 -TVIENLLVAQHQHLKSGVfagllktpafrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPEL 175
Cdd:cd03236 105 gKVGELLKKKDERGKLDEL------------------------VDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 176 LMLDEPAAGLNPKETDELDHLIVELrDRHKVSVLLIEHDMKLVMGISDRIYVVnQGTPLAQGT---PAEIRNNPDV-IRA 251
Cdd:cd03236 161 YFFDEPSSYLDIKQRLNAARLIREL-AEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYGVvtlPKSVREGINEfLDG 238
|
....*
gi 505189189 252 YLGEE 256
Cdd:cd03236 239 YLPTE 243
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
139-247 |
8.68e-08 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 52.72 E-value: 8.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 139 LERVGL--LSMaNRSAGNLAYGQ-QR-RLeiARCMVTRpelLM-----LDEPAAGLNPKETDELDHLIVELRDRHKvSVL 209
Cdd:COG0178 469 LVDVGLdyLTL-DRSAGTLSGGEaQRiRL--ATQIGSG---LVgvlyvLDEPSIGLHQRDNDRLIETLKRLRDLGN-TVI 541
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 505189189 210 LIEHDmKLVMGISDRI------------YVVnqgtplAQGTPAEIRNNPD 247
Cdd:COG0178 542 VVEHD-EDTIRAADYIidigpgagehggEVV------AQGTPEEILKNPD 584
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
21-66 |
1.01e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 52.20 E-value: 1.01e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR 66
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
21-214 |
1.23e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 51.90 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGlAGQAIARMGVVRTFQHVRLFremtvie 100
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA-EQPEDYRKLFSAVFTDFHLF------- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 nllvaqhQHLKSGvfAGLLKTPAfrraeaealaRAAEWLERVGLLSMANRSAG-----NLAYGQQRRLEIARCMVTRPEL 175
Cdd:PRK10522 410 -------DQLLGP--EGKPANPA----------LVEKWLERLKMAHKLELEDGrisnlKLSKGQKKRLALLLALAEERDI 470
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 505189189 176 LMLDEPAAGLNPKETDELDH-LIVELRDRHKvSVLLIEHD 214
Cdd:PRK10522 471 LLLDEWAADQDPHFRREFYQvLLPLLQEMGK-TIFAISHD 509
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
17-246 |
1.60e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.38 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 17 GGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDR---HLEGlAGQAIArMgvvrTFQHVRLF 93
Cdd:PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRvvnELEP-ADRDIA-M----VFQNYALY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 94 REMTVIENLLVAqhqhLKSgvfAGLLKTpafrraeaealaraaEWLERV-------GLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:PRK11650 89 PHMSVRENMAYG----LKI---RGMPKA---------------EIEERVaeaarilELEPLLDRKPRELSGGQRQRVAMG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 167 RCMVTRPELLMLDEPAAGLNPKetdeLD-HLIVELRDRH---KVSVLLIEHDMKLVMGISDRIYVVNQGTPLAQGTPAEI 242
Cdd:PRK11650 147 RAIVREPAVFLFDEPLSNLDAK----LRvQMRLEIQRLHrrlKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
....
gi 505189189 243 RNNP 246
Cdd:PRK11650 223 YEKP 226
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
31-228 |
1.94e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 51.32 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 31 EGEIVSLIGPNGAGKTTVFNCLTG--------------------FYRpsgGTIkLRDrHLEGLAGQAIArmgVVRTFQHV 90
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGelkpnlgdydeepswdevlkRFR---GTE-LQD-YFKKLANGEIK---VAHKPQYV 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 91 RLFREM---TVIEnLLVAQHQHlksGVFAGLLktpafrraeaealaraaewlERVGLLSMANRSAGNLAYGQQRRLEIAR 167
Cdd:COG1245 170 DLIPKVfkgTVRE-LLEKVDER---GKLDELA--------------------EKLGLENILDRDISELSGGELQRVAIAA 225
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505189189 168 CMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKLVMGISDRIYVV 228
Cdd:COG1245 226 ALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGK-YVLVVEHDLAILDYLADYVHIL 285
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
139-256 |
2.61e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 51.17 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 139 LERVGL--LSMaNRSAGNLAYGQQRRLEIARCMVTRPE--LLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHD 214
Cdd:TIGR00630 472 LIDVGLdyLSL-SRAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN-TLIVVEHD 549
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 505189189 215 mKLVMGISDriYVVNQGtP---------LAQGTPAEIRNNPDVIR-AYLGEE 256
Cdd:TIGR00630 550 -EDTIRAAD--YVIDIG-PgagehggevVASGTPEEILANPDSLTgQYLSGR 597
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
139-225 |
3.39e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 49.56 E-value: 3.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 139 LERVGL--LSMaNRSAGNLAYGQQRRLEIARCMVTRPE--LLMLDEPAAGLNPKETDELDHLIVELRDrHKVSVLLIEHD 214
Cdd:cd03270 121 LVDVGLgyLTL-SRSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHD 198
|
90
....*....|.
gi 505189189 215 MKlVMGISDRI 225
Cdd:cd03270 199 ED-TIRAADHV 208
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
6-223 |
4.94e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 48.79 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMgvVR 85
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE--------RQSIKKD--LC 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 86 TFQhvrlfremtviENLLVAQHqhlKSGVFAGL-LKTPAFRRAEAEALARAAEWLERV-GLLSMANRSAGNLAYGQQRRL 163
Cdd:PRK13540 71 TYQ-----------KQLCFVGH---RSGINPYLtLRENCLYDIHFSPGAVGITELCRLfSLEHLIDYPCGLLSSGQKRQV 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 164 EIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDmKLVMGISD 223
Cdd:PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG-AVLLTSHQ-DLPLNKAD 194
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
154-253 |
5.39e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.41 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGiSDRIYVVNQ--- 230
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNpdr 1436
|
90 100
....*....|....*....|....*.
gi 505189189 231 -GTPL-AQGTPAEIRNNPD-VIRAYL 253
Cdd:PTZ00265 1437 tGSFVqAHGTHEELLSVQDgVYKKYV 1462
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
28-256 |
5.56e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.19 E-value: 5.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 28 TLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGG----------TIK------LRDrHLEGLAGQAIArmgVVRTFQHVR 91
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGdyeeepswdeVLKrfrgteLQN-YFKKLYNGEIK---VVHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 92 LFREM---TVIENLLVAQhqhlKSGVFAGLLktpafrraeaealaraaewlERVGLLSMANRSAGNLAYGQQRRLEIARC 168
Cdd:PRK13409 171 LIPKVfkgKVRELLKKVD----ERGKLDEVV--------------------ERLGLENILDRDISELSGGELQRVAIAAA 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 169 MVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrhKVSVLLIEHDMKLVMGISDRIYVVnQGTPLAQG---TPAEIRNN 245
Cdd:PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIA-YGEPGAYGvvsKPKGVRVG 303
|
250
....*....|..
gi 505189189 246 PDV-IRAYLGEE 256
Cdd:PRK13409 304 INEyLKGYLPEE 315
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
6-237 |
6.55e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 49.02 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGF--YRPSGGTIKLRDRHLEGLAGQAIARMGV 83
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRTFQHV--------RLFREMTVIENLLVAQHQHLKSGVFAGLLKtpafrraeaealaraaewlERVGLLSMA----NRS 151
Cdd:PRK09580 81 FMAFQYPveipgvsnQFFLQTALNAVRSYRGQEPLDRFDFQDLME-------------------EKIALLKMPedllTRS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 AgNLAY--GQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrHKVSVLLIEHDMKLVMGIS-DRIYVV 228
Cdd:PRK09580 142 V-NVGFsgGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKpDYVHVL 219
|
....*....
gi 505189189 229 NQGTPLAQG 237
Cdd:PRK09580 220 YQGRIVKSG 228
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
23-185 |
1.10e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 47.62 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGfyRPSGGTIKlRDRHLEGLA-GQAIAR-MGVVRtfQHVRLFREMTVIE 100
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVIT-GEILINGRPlDKNFQRsTGYVE--QQDVHSPNLTVRE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLLvaqhqhlksgvFAGLLKtpafrraeaealaraaewlervgllsmanrsagNLAYGQQRRLEIARCMVTRPELLMLDE 180
Cdd:cd03232 99 ALR-----------FSALLR---------------------------------GLSVEQRKRLTIGVELAAKPSILFLDE 134
|
....*
gi 505189189 181 PAAGL 185
Cdd:cd03232 135 PTSGL 139
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
149-225 |
1.51e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 47.32 E-value: 1.51e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 149 NRSAGNLAYGQQRRLEIARCMVTRPE--LLMLDEPAAGLNPKETDELDHLIVELRDRhKVSVLLIEHDMKlVMGISDRI 225
Cdd:cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLD-VLSSADWI 158
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
23-186 |
2.42e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.18 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGfyRPSGGTIKLRDRHLEGLAGQAI--ARMGVVRTfQHVRLfREMTVIE 100
Cdd:TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVITGGDRLVNGRPLDSSfqRSIGYVQQ-QDLHL-PTSTVRE 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 101 NLlvaqhqhlksgVFAGLLKTPAfrraeAEALARAAEWLERV-GLLSM---ANRSAGNLAYG----QQRRLEIARCMVTR 172
Cdd:TIGR00956 856 SL-----------RFSAYLRQPK-----SVSKSEKMEYVEEViKLLEMesyADAVVGVPGEGlnveQRKRLTIGVELVAK 919
|
170
....*....|....*
gi 505189189 173 PELLM-LDEPAAGLN 186
Cdd:TIGR00956 920 PKLLLfLDEPTSGLD 934
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
29-238 |
3.94e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 46.03 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 29 LNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrdrhleglagqaiARMGVVRTFQHVRLfremtvienllvaqhq 108
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-------------DGITPVYKPQYIDL---------------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 109 hlkSGvfagllktpafrraeaealaraaewlervgllsmanrsagnlayGQQRRLEIARCMVTRPELLMLDEPAAGLNPK 188
Cdd:cd03222 73 ---SG--------------------------------------------GELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505189189 189 ETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVnQGTPLAQGT 238
Cdd:cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF-EGEPGVYGI 154
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
15-185 |
5.56e-06 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 45.72 E-value: 5.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 15 RFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTG----FYRPSGgtiKLRDRHLEGLAGQAIARMGVVRTFQHV 90
Cdd:cd03233 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrtegNVSVEG---DIHYNGIPYKEFAEKYPGEIIYVSEED 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 91 RLFREMTVIENLlvaqhqhlksgVFAGLLKtpafrraeaealaraaewlervgllsmANRSAGNLAYGQQRRLEIARCMV 170
Cdd:cd03233 93 VHFPTLTVRETL-----------DFALRCK---------------------------GNEFVRGISGGERKRVSIAEALV 134
|
170
....*....|....*
gi 505189189 171 TRPELLMLDEPAAGL 185
Cdd:cd03233 135 SRASVLCWDNSTRGL 149
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
5-231 |
9.12e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 46.32 E-value: 9.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 5 PLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLR---------DRHLEGLAG 75
Cdd:PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkgiklgyfaQHQLEFLRA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 76 -----QAIARMGVVRTFQHVRL------FREMTVIENllvaqhqhlkSGVFAGllktpafrraeaealaraaewlervgl 144
Cdd:PRK10636 391 desplQHLARLAPQELEQKLRDylggfgFQGDKVTEE----------TRRFSG--------------------------- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 145 lsmanrsagnlayGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDrhkvSVLLIEHDMKLVMGISDR 224
Cdd:PRK10636 434 -------------GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVSHDRHLLRSTTDD 496
|
....*..
gi 505189189 225 IYVVNQG 231
Cdd:PRK10636 497 LYLVHDG 503
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-76 |
1.35e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 45.19 E-value: 1.35e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIklrDRHLE--------GLAGQ 76
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV---DRNGEvsviaisaGLSGQ 99
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
7-219 |
3.42e-05 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 44.41 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRF--GGLLaVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRhleglagqaiARMgvv 84
Cdd:COG4178 363 LALEDLTLRTpdGRPL-LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAG----------ARV--- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 85 rtfqhvrlfremtvienLLVAQHQHLKSGVFAGLLKTPAfrRAEAEALARAAEWLERVGL------LSMANRSAGNLAYG 158
Cdd:COG4178 429 -----------------LFLPQRPYLPLGTLREALLYPA--TAEAFSDAELREALEAVGLghlaerLDEEADWDQVLSLG 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 159 QQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLiveLRDRHK----VSV-----LLIEHDMKLVM 219
Cdd:COG4178 490 EQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQL---LREELPgttvISVghrstLAAFHDRVLEL 556
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
24-198 |
4.23e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 43.32 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 24 NVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAIARMGvvrtfQHVRLFREMTVIENLL 103
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG-----HNLGLKLEMTVFENLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 104 vaqhqhLKSGVFAGLLKTPAFrraeaealaraaewLERVGLLSMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAA 183
Cdd:PRK13541 93 ------FWSEIYNSAETLYAA--------------IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152
|
170
....*....|....*
gi 505189189 184 GLNPKETDELDHLIV 198
Cdd:PRK13541 153 NLSKENRDLLNNLIV 167
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
7-247 |
4.69e-05 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 43.53 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 7 LQVEGLSMRFGGLLaVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRP----SGGTIKLRDR--HLEGLAGQAIAR 80
Cdd:PRK10418 5 IELRNIALQAAQPL-VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKpvAPCALRGRKIAT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 81 -MGVVRT-FQHVRLFREMtVIENLLVAQhqhlKSGVFAGLLKTpafrraeaealaraaewLERVGL---LSMANRSAGNL 155
Cdd:PRK10418 84 iMQNPRSaFNPLHTMHTH-ARETCLALG----KPADDATLTAA-----------------LEAVGLenaARVLKLYPFEM 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLA 235
Cdd:PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221
|
250
....*....|..
gi 505189189 236 QGTPAEIRNNPD 247
Cdd:PRK10418 222 QGDVETLFNAPK 233
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
6-245 |
4.72e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.58 E-value: 4.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 6 LLQVEGLSMRF-GGLLAV-NNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHleglagqaIARMGV 83
Cdd:PLN03232 1234 SIKFEDVHLRYrPGLPPVlHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD--------VAKFGL 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 84 VRtfqhvrLFREMTVIENLLVaqhqhlksgVFAGLLKtpaFRRAEAEALARAAEW--LERVGLLSMANRS---------- 151
Cdd:PLN03232 1306 TD------LRRVLSIIPQSPV---------LFSGTVR---FNIDPFSEHNDADLWeaLERAHIKDVIDRNpfgldaevse 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 152 -AGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKetdeLDHLIVE-LRDRHK-VSVLLIEHDMKLVMGiSDRIYVV 228
Cdd:PLN03232 1368 gGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR----TDSLIQRtIREEFKsCTMLVIAHRLNTIID-CDKILVL 1442
|
250
....*....|....*..
gi 505189189 229 NQGTPLAQGTPAEIRNN 245
Cdd:PLN03232 1443 SSGQVLEYDSPQELLSR 1459
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
8-218 |
9.95e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.02 E-value: 9.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 8 QVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKlRDRHLEglagqaiarmgvVRTF 87
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-CGTKLE------------VAYF 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 88 QHVR--LFREMTVIENLLVAQHQHLKSGVFAGLL-------------KTPafrraeaealaraaewlerVGLLSmanrsa 152
Cdd:PRK11147 388 DQHRaeLDPEKTVMDNLAEGKQEVMVNGRPRHVLgylqdflfhpkraMTP-------------------VKALS------ 442
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 153 GnlayGQQRRLEIARCMVTRPELLMLDEPaaglnpkeTDELD----HLIVELRDRHKVSVLLIEHDMKLV 218
Cdd:PRK11147 443 G----GERNRLLLARLFLKPSNLLILDEP--------TNDLDvetlELLEELLDSYQGTVLLVSHDRQFV 500
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
32-188 |
1.78e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 42.53 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 32 GEIVSLIGPNGAGKTTVFNCLTGfyRPSGGTIKlRDRHLEGLAGQAiarmgvvRTFQHVRLFREMTVIENLLVAQHQHLk 111
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ-------ETFARISGYCEQNDIHSPQVTVRESL- 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 112 sgVFAGLLKTPAfRRAEAEALARAAEWLERVGLLSMANRSAG-----NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLN 186
Cdd:PLN03140 975 --IYSAFLRLPK-EVSKEEKMMFVDEVMELVELDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
..
gi 505189189 187 PK 188
Cdd:PLN03140 1052 AR 1053
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
23-106 |
1.97e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 41.33 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 23 NNVALTLNEGeIVSLIGPNGAGKTTVFNC----LTGFYRPSGGTIKLRDRHLEGLAGQAIARMGVVR-TFQHVRLFREMT 97
Cdd:pfam13476 10 RDQTIDFSKG-LTLITGPNGSGKTTILDAiklaLYGKTSRLKRKSGGGFVKGDIRIGLEGKGKAYVEiTFENNDGRYTYA 88
|
....*....
gi 505189189 98 VIENLLVAQ 106
Cdd:pfam13476 89 IERSRELSK 97
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
150-242 |
2.33e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.12 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCM---VTRPELLMLDEPAAGLNPKETDELDHLIVELRDR-HkvSVLLIEHDMKLVMgISDri 225
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQgH--TVVIIEHNMHVVK-VAD-- 879
|
90 100
....*....|....*....|....*
gi 505189189 226 YVVNQGTP--------LAQGTPAEI 242
Cdd:PRK00635 880 YVLELGPEggnlggylLASCSPEEL 904
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
150-242 |
3.16e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.92 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 150 RSAGNLAYGQQRRLEIARCM---VTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLLIEHDMKlVMGISDriY 226
Cdd:TIGR00630 825 QPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGN-TVVVIEHNLD-VIKTAD--Y 900
|
90 100
....*....|....*....|....
gi 505189189 227 VV--------NQGTPLAQGTPAEI 242
Cdd:TIGR00630 901 IIdlgpeggdGGGTVVASGTPEEV 924
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-242 |
6.08e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 41.08 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 20 LAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRdrhleglaGQAIARMGVvrtfqHvRLFREMTVI 99
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID--------GLNIAKIGL-----H-DLRFKITII 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLLVaqhqhlksgVFAGLLKtpaFRRAEAEALARAAEW--LERV-----------GLLSMANRSAGNLAYGQQRRLEIA 166
Cdd:TIGR00957 1366 PQDPV---------LFSGSLR---MNLDPFSQYSDEEVWwaLELAhlktfvsalpdKLDHECAEGGENLSVGQRQLVCLA 1433
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 167 RCMVTRPELLMLDEPAAGLNpKETDELDHLIVELRdRHKVSVLLIEHDMKLVMGISdRIYVVNQGTPLAQGTPAEI 242
Cdd:TIGR00957 1434 RALLRKTKILVLDEATAAVD-LETDNLIQSTIRTQ-FEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNL 1506
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
139-253 |
8.43e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 40.44 E-value: 8.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 139 LERVGL--LSMaNRSAGNLAYGQ-QR-RL--EI-ARCM-VtrpeLLMLDEPAAGLNPKETDELDHLIVELRDRHKvSVLL 210
Cdd:PRK00349 473 LVDVGLdyLTL-SRSAGTLSGGEaQRiRLatQIgSGLTgV----LYVLDEPSIGLHQRDNDRLIETLKHLRDLGN-TLIV 546
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 505189189 211 IEHDmKLVMGISDriYVV--------NQGTPLAQGTPAEIRNNPDVIR-AYL 253
Cdd:PRK00349 547 VEHD-EDTIRAAD--YIVdigpgagvHGGEVVASGTPEEIMKNPNSLTgQYL 595
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
146-218 |
1.17e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.01 E-value: 1.17e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505189189 146 SMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIVELRDRHKVSVLLIEHDMKLV 218
Cdd:PTZ00265 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
12-99 |
1.60e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.49 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 12 LSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLrDRHLeglagqaiaRMGVVRTFQHVr 91
Cdd:PRK15064 7 ITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL-DPNE---------RLGKLRQDQFA- 75
|
....*...
gi 505189189 92 lFREMTVI 99
Cdd:PRK15064 76 -FEEFTVL 82
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
154-245 |
2.54e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 38.95 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 154 NLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKEtdelDHLIVE-LRDRHK-VSVLLIEHDMKLVMGiSDRIYVVNQG 231
Cdd:PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT----DALIQKtIREEFKsCTMLIIAHRLNTIID-CDRILVLDAG 1448
|
90
....*....|....
gi 505189189 232 TPLAQGTPAEIRNN 245
Cdd:PLN03130 1449 RVVEFDTPENLLSN 1462
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
153-214 |
3.35e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 38.38 E-value: 3.35e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505189189 153 GNLAYGQQRRLEIARCMVTRPELLMLDEPaaglnpkeTDELDHLIVELRDRH----KVSVLLIEHD 214
Cdd:TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEP--------TNHLDAESVAWLERHlqeyPGTVVAVTHD 217
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
31-124 |
4.23e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 37.30 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 31 EGEIVSLIGPNGAGKTTVFNCLT-GFYRPSGGTIKLRDRHLEGLAGQAIARMGVVRTFQHVRLFREMTVIENLLVAQHQH 109
Cdd:COG0419 22 DDGLNLIVGPNGAGKSTILEAIRyALYGKARSRSKLRSDLINVGSEEASVELEFEHGGKRYRIERRQGEFAEFLEAKPSE 101
|
90
....*....|....*
gi 505189189 110 LKSgVFAGLLKTPAF 124
Cdd:COG0419 102 RKE-ALKRLLGLEIY 115
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
12-232 |
4.30e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 38.23 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 12 LSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQ---AIARMGVVRTFQ 88
Cdd:PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQetpALPQPALEYVID 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 89 HVRLFREMtviENLLVAQHQHLKSGVFA---GLLKTpafrraeaealarAAEWLERVGLLSMAN----------RSAGNL 155
Cdd:PRK10636 87 GDREYRQL---EAQLHDANERNDGHAIAtihGKLDA-------------IDAWTIRSRAASLLHglgfsneqleRPVSDF 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505189189 156 AYGQQRRLEIARCMVTRPELLMLDEPAAGLnpketdELDHLIVELR--DRHKVSVLLIEHDMKLVMGISDRIYVVNQGT 232
Cdd:PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHL------DLDAVIWLEKwlKSYQGTLILISHDRDFLDPIVDKIIHIEQQS 223
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
7-65 |
5.26e-03 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 37.06 E-value: 5.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505189189 7 LQVEGLSMRFG-----GLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKL 65
Cdd:cd03250 1 ISVEDASFTWDsgeqeTSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV 64
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
21-246 |
6.34e-03 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 37.77 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 21 AVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTGFYRPSGGTIKLRDRHLEGLAGQAI-ARMGVVRtfQHVRLFREmTVI 99
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWrSRLAVVS--QTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 100 ENLLV----AQHQHLK-----SGVFAGLLKTPAfrraeaealaraaewlervGLLSMANRSAGNLAYGQQRRLEIARCMV 170
Cdd:PRK10789 407 NNIALgrpdATQQEIEhvarlASVHDDILRLPQ-------------------GYDTEVGERGVMLSGGQKQRISIARALL 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505189189 171 TRPELLMLDEPAAGLNPKETDELDHlivELRD-RHKVSVLLIEHDMKLVMGiSDRIYVVNQGTPLAQGTPAEIRNNP 246
Cdd:PRK10789 468 LNAEILILDDALSAVDGRTEHQILH---NLRQwGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-225 |
8.61e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 37.24 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 1 MSvqpLLQVEGLSMRFGGLLAVNNVALTLNEGEIVSLIGPNGAGKTTVFNCLTG---------FY--------------R 57
Cdd:PRK11147 1 MS---LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGevllddgriIYeqdlivarlqqdppR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 58 PSGGTIklRDRHLEGLAGQAiarmGVVRTFQHV----------RLFREMTVIENLLvaQHQHLksgvfagllktpafrra 127
Cdd:PRK11147 78 NVEGTV--YDFVAEGIEEQA----EYLKRYHDIshlvetdpseKNLNELAKLQEQL--DHHNL----------------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505189189 128 eaealaraaeW---------LERVGLlsMANRSAGNLAYGQQRRLEIARCMVTRPELLMLDEPAAGLNPKETDELDHLIV 198
Cdd:PRK11147 133 ----------WqlenrinevLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLK 200
|
250 260
....*....|....*....|....*..
gi 505189189 199 ELRDrhkvSVLLIEHDMKLVMGISDRI 225
Cdd:PRK11147 201 TFQG----SIIFISHDRSFIRNMATRI 223
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
22-71 |
8.96e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 36.90 E-value: 8.96e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 505189189 22 VNNVALTLNEGeIVSLIGPNGAGKTTVFNCLTGFYRPSGG-TIKLRDRHLE 71
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSrKFDEEDFYLG 63
|
|
| |
