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Conserved domains on  [gi|505162334|ref|WP_015349436|]
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MULTISPECIES: ribbon-helix-helix domain-containing protein [Myxococcaceae]

Protein Classification

RHH_3 domain-containing protein( domain architecture ID 10576947)

RHH_3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_3 pfam12651
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 6-49 2.11e-09

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


:

Pssm-ID: 289422  Cd Length: 44  Bit Score: 46.90  E-value: 2.11e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 505162334   6 RLTSVVFRLNREKLDALKELSRSTRIRQSEYLREAISDLLAKYE 49
Cdd:pfam12651  1 NKTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Name Accession Description Interval E-value
RHH_3 pfam12651
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 6-49 2.11e-09

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


Pssm-ID: 289422  Cd Length: 44  Bit Score: 46.90  E-value: 2.11e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 505162334   6 RLTSVVFRLNREKLDALKELSRSTRIRQSEYLREAISDLLAKYE 49
Cdd:pfam12651  1 NKTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Name Accession Description Interval E-value
RHH_3 pfam12651
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 6-49 2.11e-09

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


Pssm-ID: 289422  Cd Length: 44  Bit Score: 46.90  E-value: 2.11e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 505162334   6 RLTSVVFRLNREKLDALKELSRSTRIRQSEYLREAISDLLAKYE 49
Cdd:pfam12651  1 NKTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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