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Conserved domains on  [gi|505070059|ref|WP_015257161|]
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YggT family protein [Thioalkalivibrio nitratireducens]

Protein Classification

YggT family protein( domain architecture ID 10492032)

YggT family protein similar to Escherichia coli membrane protein YggT

PubMed:  19966467

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 100-171 3.19e-11

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 56.67  E-value: 3.19e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505070059 100 LAAISAVLVTTIWILIVSLIVEVVLSWVQAGggdmRGNPVARLVADVNRPILAPLRRNLPSTGAIDFSPMVA 171
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPF----GYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVA 68
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 34-67 1.76e-04

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


:

Pssm-ID: 460533  Cd Length: 71  Bit Score: 38.24  E-value: 1.76e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 505070059   34 RADFFNPISQTIVQLTNPPLVLMRRFIPPLGRLD 67
Cdd:pfam02325  22 PNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 100-171 3.19e-11

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 56.67  E-value: 3.19e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505070059 100 LAAISAVLVTTIWILIVSLIVEVVLSWVQAGggdmRGNPVARLVADVNRPILAPLRRNLPSTGAIDFSPMVA 171
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPF----GYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVA 68
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 109-171 1.97e-08

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 49.02  E-value: 1.97e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505070059  109 TTIWILIVSLIVEVVLSWVQAGGgdmRGNPVARLVADVNRPILAPLRRNLPSTGAIDFSPMVA 171
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNP---FVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVA 61
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 34-67 1.76e-04

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 38.24  E-value: 1.76e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 505070059   34 RADFFNPISQTIVQLTNPPLVLMRRFIPPLGRLD 67
Cdd:pfam02325  22 PNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 33-67 1.87e-03

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 35.87  E-value: 1.87e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 505070059  33 VRADFFNPISQTIVQLTNPPLVLMRRFIPPLGRLD 67
Cdd:COG0762   28 VPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGID 62
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 100-171 3.19e-11

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 56.67  E-value: 3.19e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505070059 100 LAAISAVLVTTIWILIVSLIVEVVLSWVQAGggdmRGNPVARLVADVNRPILAPLRRNLPSTGAIDFSPMVA 171
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPF----GYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVA 68
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 109-171 1.97e-08

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 49.02  E-value: 1.97e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505070059  109 TTIWILIVSLIVEVVLSWVQAGGgdmRGNPVARLVADVNRPILAPLRRNLPSTGAIDFSPMVA 171
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNP---FVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVA 61
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 34-67 1.76e-04

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 38.24  E-value: 1.76e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 505070059   34 RADFFNPISQTIVQLTNPPLVLMRRFIPPLGRLD 67
Cdd:pfam02325  22 PNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 33-67 1.87e-03

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 35.87  E-value: 1.87e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 505070059  33 VRADFFNPISQTIVQLTNPPLVLMRRFIPPLGRLD 67
Cdd:COG0762   28 VPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGID 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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