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Conserved domains on  [gi|505064307|ref|WP_015251409|]
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MULTISPECIES: carbohydrate ABC transporter permease [Bacillus]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
22-299 4.49e-102

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 300.51  E-value: 4.49e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  22 WWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYA 101
Cdd:COG1175   21 YLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLA 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 102 LLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVMINTYQYVGIA 181
Cdd:COG1175  101 LLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFN 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 182 MVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGPGNASQSMSTFMY 261
Cdd:COG1175  181 MLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIY 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 505064307 262 DLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKE 299
Cdd:COG1175  261 QTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
22-299 4.49e-102

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 300.51  E-value: 4.49e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  22 WWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYA 101
Cdd:COG1175   21 YLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLA 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 102 LLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVMINTYQYVGIA 181
Cdd:COG1175  101 LLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFN 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 182 MVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGPGNASQSMSTFMY 261
Cdd:COG1175  181 MLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIY 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 505064307 262 DLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKE 299
Cdd:COG1175  261 QTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
26-298 9.19e-25

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 100.67  E-value: 9.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  26 IPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALLLN 105
Cdd:PRK10561   4 APQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 106 QSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNpWIIVMINTYQYVGIAMVVY 185
Cdd:PRK10561  84 YVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAM-FLVVFASVWKQISYNFLFF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 186 LAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGG-LKLFDVIIALTAGGPgnaSQSMSTFMYDLY 264
Cdd:PRK10561 163 FAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSGGP---VQATTTLIYKIY 239

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 505064307 265 ---FKRQDAGYAATQGIFMAFVILIISFCALAYFKRK 298
Cdd:PRK10561 240 regFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 79-285 4.34e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 4.34e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  79 LKNTLLYGLGSTFFQNVVGLLYALLLNQSI-KTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDllgvfgispin 157
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIL----------- 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 158 alasPSLNPWIIVMINTYqYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKL 237
Cdd:cd06261   70 ----PGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 505064307 238 FDVIIALTAGGPGNAsqSMSTFMYDLYFKRQDAGYAATQGIFMAFVIL 285
Cdd:cd06261  145 FALVSFLGGGEAPGP--GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 167-295 2.15e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 2.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  167 WIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTA 246
Cdd:pfam00528  53 LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 505064307  247 GGPGNASQSMSTFMYDlyfkrqdagYAATQGIFMAFVILIISFCALAYF 295
Cdd:pfam00528 133 WPGLGLLLIEAILGYD---------YPEIQGPVLAAALILLLLNLLVDI 172
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 59-217 3.75e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 54.30  E-value: 3.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307   59 QWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALLLNQS-IKTKAVTRTIVYLPVMISPLIMGYIWYFFF 137
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  138 SyDGGALNDLLGVFGIspinalaspsLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLP 217
Cdd:TIGR03262 116 G-NQGLLKGLLGGFSI----------YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
22-299 4.49e-102

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 300.51  E-value: 4.49e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  22 WWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYA 101
Cdd:COG1175   21 YLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLA 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 102 LLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVMINTYQYVGIA 181
Cdd:COG1175  101 LLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFN 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 182 MVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGPGNASQSMSTFMY 261
Cdd:COG1175  181 MLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIY 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 505064307 262 DLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKE 299
Cdd:COG1175  261 QTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 16-288 3.25e-55

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 181.44  E-value: 3.25e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  16 KKQSSLWWMYIPALLSVLVFMIYPFVkGTLITFTNWNGFSQVY--QWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQ 93
Cdd:COG4209   24 KRDWQLYLMLLPGLIYLLIFSYLPMY-GIVIAFKDYNPFKGIFgsPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  94 NVVGLLYALLLNQ--SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVM 171
Cdd:COG4209  103 FPLPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGEPINFLTEPKYFRPIYVF 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 172 INTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKL-FDVIIALTAGGPG 250
Cdd:COG4209  183 SGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLNY 262

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 505064307 251 NASQSMSTFMYDLYFKRQDAGYAATQGIFMAFV--ILIIS 288
Cdd:COG4209  263 STSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVglILVLI 302
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 15-303 1.00e-29

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 114.09  E-value: 1.00e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  15 PKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQN 94
Cdd:COG1176    5 LRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  95 VVGLLYALLLNQ-SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSyDGGALNDLLGVFGIspinaLASPslnpwiIVMIN 173
Cdd:COG1176   85 LLGYPIAYFLARaPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLG-RNGLLNSLLLALGL-----IDEP------LRLLY 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 174 TYQYVGIAMV-VYL--------AGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFdvIIAL 244
Cdd:COG1176  153 TEFAVVIGLVyVYLpfmvlplyAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF--VTPA 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 505064307 245 TAGGPGnaSQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKETEMS 303
Cdd:COG1176  231 LLGGGK--VLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
14-293 2.31e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 111.02  E-value: 2.31e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  14 KPKKQSSLWWMYIPALLsVLVFMIYPFVkgTLItftnWNGFSqvyqwVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQ 93
Cdd:COG1178    3 TRPRRRPRLLLLLLALL-LALLVLLPLL--ALL----LRAFT-----DGLANFWALLSDPYLWRALGNTLLLALLVTLLS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  94 NVVGLLYALLLNQS-IKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYdGGALNDLLG-VFGISPINALaspslNPWIIVM 171
Cdd:COG1178   71 LLLGVPLAWLLARTdFPGRRLLRWLLLLPLALPPYVVALAWIALFGP-NGLLNTLLRaLFGLEPPDIY-----GLGGIIL 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 172 INTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALtaggpGN 251
Cdd:COG1178  145 VLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-----GG 219

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 505064307 252 ASQSMSTFMYDLYFKRQDAGYAATqgifMAFVILIISFCALA 293
Cdd:COG1178  220 GYTTLTTAIYQAWLGDFDLGAAAA----LALVLLLLVLLLLL 257
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
26-298 9.19e-25

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 100.67  E-value: 9.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  26 IPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALLLN 105
Cdd:PRK10561   4 APQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 106 QSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNpWIIVMINTYQYVGIAMVVY 185
Cdd:PRK10561  84 YVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAM-FLVVFASVWKQISYNFLFF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 186 LAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGG-LKLFDVIIALTAGGPgnaSQSMSTFMYDLY 264
Cdd:PRK10561 163 FAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSGGP---VQATTTLIYKIY 239

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 505064307 265 ---FKRQDAGYAATQGIFMAFVILIISFCALAYFKRK 298
Cdd:PRK10561 240 regFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 23-287 3.28e-19

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 85.16  E-value: 3.28e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  23 WMYIPallsVLVFMIYPFVKGTLITFtNWNGFSqvyqwvgFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYAL 102
Cdd:COG1177   19 FLYLP----ILVLVLYSFNDSWFLTF-PPEGFT-------LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 103 LLNQ-SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSydggALNDLLGVFGIspINALASPSLnPWIIVMIntyqyvgia 181
Cdd:COG1177   87 ALARyRFRGRRLLLALLLLPLVVPGIVLGVALLLLFS----ALGLSGGLWGL--ILAHVVFTL-PFVVLVV--------- 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 182 mvvyLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIggLKLFDVIIALTAGGPGnaSQSMSTFMY 261
Cdd:COG1177  151 ----LARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFT--LSFDEFVITLFLAGPG--VTTLPVYIY 222

                        250       260
                 ....*....|....*....|....*.
gi 505064307 262 DLYFKRQDAGYAATQGIFMAFVILII 287
Cdd:COG1177  223 SMIRRGISPEINALSTLLILLSLLLL 248
malF PRK10999
maltose ABC transporter permease MalF;
60-249 1.64e-17

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 82.32  E-value: 1.64e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  60 WVGFAQYERLFSDPDT----WHILKNTLLYGLGSTFFQNVVGLLYALLLN-QSIKTKAVTRTIVYLPVMISPLIMGYIWY 134
Cdd:PRK10999 264 TIGWKNFTRVFTDEGIqkpfIAIFIWTVVFSLLTVVLTVAVGMVLACLVQwEALKGKAVYRVLLILPYAVPSFISILIFK 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 135 FFFSYDGGALNDLL-GVFGISPiNALASPSLNPWIIVMINT---YQYVgiaMVVYLAGLQSIPKDYYEAAQMDGAKQGQQ 210
Cdd:PRK10999 344 GLFNQSFGEINMMLsALFGIKP-AWFSDPTLAKTMILIVNTwlgYPYM---MILCMGLLKAIPDDLYEASAMDGAGPFQN 419

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 505064307 211 FFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGP 249
Cdd:PRK10999 420 FFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGP 458
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 79-285 4.34e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 4.34e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  79 LKNTLLYGLGSTFFQNVVGLLYALLLNQSI-KTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDllgvfgispin 157
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIL----------- 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 158 alasPSLNPWIIVMINTYqYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKL 237
Cdd:cd06261   70 ----PGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 505064307 238 FDVIIALTAGGPGNAsqSMSTFMYDLYFKRQDAGYAATQGIFMAFVIL 285
Cdd:cd06261  145 FALVSFLGGGEAPGP--GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
21-297 1.16e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 74.04  E-value: 1.16e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  21 LWWMYIPALLsVLVFMIYPFvkGTLItftnWNGFSQVYQW-VGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLL 99
Cdd:COG1178  288 WLALALCLLL-VLLGLLLPL--LALL----LWSLTKALDDnLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALL 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 100 YALLLNQS-IKTKAVTRTIVYLPVMISPLIMGYIWYFFFsydggalndlLGVFGISPINALaspslnpWIIVMINTYQYV 178
Cdd:COG1178  361 LAYLVRRRrGRLARLLDRLAMLPYAVPGIVLGLGLLLLF----------NRPLPLLLYGTL-------AILVLAYVVRFL 423

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 179 GIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTAGGpgnaSQSMST 258
Cdd:COG1178  424 PFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG----FETLAV 499

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 505064307 259 FMYdlyfkRQDAGYAATQGIFMAFVILIISFCALAYFKR 297
Cdd:COG1178  500 LIY-----QLASSGRYGEAAALALLLVLVSLLPVLLLER 533
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 22-223 3.04e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 65.54  E-value: 3.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  22 WWMYIPaLLSVLVFMIYPFVkgTLITFTNWngfsqvyqwVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYA 101
Cdd:COG0555   11 LTLGLT-LLYLSLIVLLPLA--ALVLKAAG---------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 102 LLLNQ-SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSyDGGALNDLLGVFGISPINAlaspslnPWIIVMINTYqyVGI 180
Cdd:COG0555   79 WVLVRyRFPGKRLVDALVDLPFALPTAVAGIALLLLFG-PNGWLGQLLAPLGIKVAFT-------PLGIVLAQTF--VSL 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 505064307 181 AMVV--YLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSI 223
Cdd:COG0555  149 PFVVrtVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPAL 193
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 167-295 2.15e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 2.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  167 WIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALTA 246
Cdd:pfam00528  53 LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 505064307  247 GGPGNASQSMSTFMYDlyfkrqdagYAATQGIFMAFVILIISFCALAYF 295
Cdd:pfam00528 133 WPGLGLLLIEAILGYD---------YPEIQGPVLAAALILLLLNLLVDI 172
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-233 1.08e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 55.10  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  11 KQVKPKKQSSLWWMYIpALLSVLVFMIYPFVkGTLITFTNWNG--FSQVYQWV----GFAQYERLFSDPDTWHILKNTLL 84
Cdd:COG0395    4 TARRRRRRLGRILLYL-LLILLALLFLFPLY-WMVVTSFKPPAeiFSGPPSLLpsefTLENYRAAFTDGPFGRYLLNSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  85 YGLGSTFFQNVVGLL--YALllnqsIKTKAVTRTIVYLPVMIS---PLIMGYIWYFFFSYDGGALNDLLGVFGISPINAL 159
Cdd:COG0395   82 VAVVSTVLSLLLSSLaaYAL-----ARFRFRGRKLLFLLILATlmiPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGL 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505064307 160 aspslnPWIIVMINTYqyvgiamvvylagLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIG 233
Cdd:COG0395  157 ------PFGIFLLRQF-------------FRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIG 211
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 9-223 2.03e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 54.24  E-value: 2.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307   9 HVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGfsqvyqwVGFAQYERLFSDPDTWHILKNTLLYGLG 88
Cdd:PRK15050  12 HAAAARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHG-------LGLATYRAVLGSPDFRGALLTTLQIAFA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  89 STFFQNVVGLLYALLL--NQSIKTKAVTR---TIVYLPVMISPLImgyiwyFFFSY-DGGALNDLLgvfgiSPINALASP 162
Cdd:PRK15050  85 STAGCLVLGVLLALVLafVPFPGASLVGRfidTFVAFPSFLITLA------FTFLYgSAGSVNIAL-----QRLFGLEAP 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505064307 163 SLN----PWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSI 223
Cdd:PRK15050 154 PLDflysPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPAL 218
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 9-234 2.23e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.00  E-value: 2.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307   9 HVKQVKPKKQSSLWWMYIpALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQW---VGFAQYERLFSDPDTWHILKNTLLY 85
Cdd:COG3833    3 RRKSRKRRRRLKLGLRHL-VLIILAIIALFPILWVVSASFNPGGSLYSSSLIpenFTLENYKKLFTETPFLRWFLNSLIV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  86 GLGSTFFQNVVGLL--YAL----------LLnqsiktkavtrtIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVfgi 153
Cdd:COG3833   82 AVVTAIISVFLAALaaYAFsrfrfkgrkaGL------------LALLLLQMFPAFLALVALYLLLSALGLLNTLLGL--- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 154 spinalaspslnpwIIVMINTyqyvGIAMVVYLAG--LQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINI 231
Cdd:COG3833  147 --------------ILVYLGG----AIPFNTWLMKgyFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSF 208


                 ...
gi 505064307 232 IGG 234
Cdd:COG3833  209 IGP 211
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 59-217 3.75e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 54.30  E-value: 3.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307   59 QWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALLLNQS-IKTKAVTRTIVYLPVMISPLIMGYIWYFFF 137
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  138 SyDGGALNDLLGVFGIspinalaspsLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLP 217
Cdd:TIGR03262 116 G-NQGLLKGLLGGFSI----------YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
modB PRK09421
molybdate ABC transporter permease subunit;
73-292 8.11e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 39.90  E-value: 8.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  73 PDTWHILKNTLLYGLGSTFFQNVVGLLYALLLNQ-SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYD---GGALNDLL 148
Cdd:PRK09421   5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARcRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRgfiGQWLYEWF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 149 G-VFGISPINA-LASpslnpwiIVMintyqyvGIAMVVY---LAgLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSI 223
Cdd:PRK09421  85 GiSFAFSWRGAaLAA-------AVM-------AFPLMVRairLS-LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGI 149

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505064307 224 TINMVINIIGGLKLFDVIIALTAGGPGnASQSMSTFMYDLyFKRQDAGYAATQgifMAFVILIISFCAL 292
Cdd:PRK09421 150 IAGTVLAFARSLGEFGATITFVSNIPG-ETQTIPSAMYTL-IQTPGGESAAAR---LCIISIAIALASL 213
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 28-223 2.53e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 39.28  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307   28 ALLSVLVFMIYpfvkGTLITFTNWNgfsqvyQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALL---L 104
Cdd:TIGR03262 293 ALLAVVGMAVY----ASLVKFWPYN------LSLTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGTILVFGGAYLiekT 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  105 NQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFgispinalaspslnpWIIVMINTYQYVGIAMVV 184
Cdd:TIGR03262 363 RGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYGTM---------------ALLVLCTVVHFYTVSHLT 427

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 505064307  185 YLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSI 223
Cdd:TIGR03262 428 AVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAI 466
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
63-292 9.07e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 37.04  E-value: 9.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307  63 FAQYERLFSDPDTWHILKNTLLYGLGSTFFQNVVGLLYALLLNQ-SIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDg 141
Cdd:PRK10971  44 WAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRyRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN- 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505064307 142 GALNDLLGVFGISPINAlaspslnpWIIVMInTYQYVGIAMVVYLAG--LQSIPKDYYEAAQMDGAKQGQQFFTITLPLL 219
Cdd:PRK10971 123 GWYGEWLAKFDIKVTYT--------WLGIAV-AMAFTSIPFVVRTVQpvLEELGPEYEEAAETLGATRWQSFRKVVLPEL 193

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505064307 220 MPSITINMVINIIGGLKLFDVIIALTaggpGNASQSMSTFMYDLYFKRQDAGYAATQGIfmAFVILIISFCAL 292
Cdd:PRK10971 194 SPALLAGVALSFTRSLGEFGAVIFIA----GNIAWKTEVTSLMIFVRLQEFDYPAASAI--ASVILAASLLLL 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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