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Conserved domains on  [gi|504878424|ref|WP_015065526|]
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MULTISPECIES: hypothetical protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK13719 super family cl28301
conjugal transfer transcriptional regulator TraJ; Provisional
1-230 2.41e-25

conjugal transfer transcriptional regulator TraJ; Provisional


The actual alignment was detected with superfamily member PRK13719:

Pssm-ID: 237479  Cd Length: 217  Bit Score: 99.04  E-value: 2.41e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424   1 MCAKDRSHIAVRSQTDSIHSMREMLNISSCPAFIRDSRGEVIHTSPTFDKIFLTSggtgaFDTPRapgsWFLDLSLEIKL 80
Cdd:PRK13719   1 MYPMDRRERATIRQIDLPESLTAFIDDYSYPACIRNESGKFIFYNTLFLKEFLGQ-----LQSKE----WWFSLPIDTAT 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424  81 ELMQSELKSFSEGSAV-LVKNIWLAGSLWTVFIETFSINEDTYSKWVFINEDepiphpSMEFNDFSIKMQRYIERIQRSA 159
Cdd:PRK13719  72 LLSRAELDAMSEPSGMnIIEDVFINNKLWDVIIESFIYGGVVFFLWRFFCAA------SNVISSIIRGLSTNLEAKNKVT 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504878424 160 KSDWAIFNLYAVGFSHACISKITGVGVQTSKNTVSKIKKELSFDDRDYIIMSSIYTLSYGKFISNVVSILK 230
Cdd:PRK13719 146 KYQNDVFILYSFGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDELLIILHTSEMIFYLYKKVFEIIN 216
 
Name Accession Description Interval E-value
PRK13719 PRK13719
conjugal transfer transcriptional regulator TraJ; Provisional
1-230 2.41e-25

conjugal transfer transcriptional regulator TraJ; Provisional


Pssm-ID: 237479  Cd Length: 217  Bit Score: 99.04  E-value: 2.41e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424   1 MCAKDRSHIAVRSQTDSIHSMREMLNISSCPAFIRDSRGEVIHTSPTFDKIFLTSggtgaFDTPRapgsWFLDLSLEIKL 80
Cdd:PRK13719   1 MYPMDRRERATIRQIDLPESLTAFIDDYSYPACIRNESGKFIFYNTLFLKEFLGQ-----LQSKE----WWFSLPIDTAT 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424  81 ELMQSELKSFSEGSAV-LVKNIWLAGSLWTVFIETFSINEDTYSKWVFINEDepiphpSMEFNDFSIKMQRYIERIQRSA 159
Cdd:PRK13719  72 LLSRAELDAMSEPSGMnIIEDVFINNKLWDVIIESFIYGGVVFFLWRFFCAA------SNVISSIIRGLSTNLEAKNKVT 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504878424 160 KSDWAIFNLYAVGFSHACISKITGVGVQTSKNTVSKIKKELSFDDRDYIIMSSIYTLSYGKFISNVVSILK 230
Cdd:PRK13719 146 KYQNDVFILYSFGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDELLIILHTSEMIFYLYKKVFEIIN 216
 
Name Accession Description Interval E-value
PRK13719 PRK13719
conjugal transfer transcriptional regulator TraJ; Provisional
1-230 2.41e-25

conjugal transfer transcriptional regulator TraJ; Provisional


Pssm-ID: 237479  Cd Length: 217  Bit Score: 99.04  E-value: 2.41e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424   1 MCAKDRSHIAVRSQTDSIHSMREMLNISSCPAFIRDSRGEVIHTSPTFDKIFLTSggtgaFDTPRapgsWFLDLSLEIKL 80
Cdd:PRK13719   1 MYPMDRRERATIRQIDLPESLTAFIDDYSYPACIRNESGKFIFYNTLFLKEFLGQ-----LQSKE----WWFSLPIDTAT 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504878424  81 ELMQSELKSFSEGSAV-LVKNIWLAGSLWTVFIETFSINEDTYSKWVFINEDepiphpSMEFNDFSIKMQRYIERIQRSA 159
Cdd:PRK13719  72 LLSRAELDAMSEPSGMnIIEDVFINNKLWDVIIESFIYGGVVFFLWRFFCAA------SNVISSIIRGLSTNLEAKNKVT 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504878424 160 KSDWAIFNLYAVGFSHACISKITGVGVQTSKNTVSKIKKELSFDDRDYIIMSSIYTLSYGKFISNVVSILK 230
Cdd:PRK13719 146 KYQNDVFILYSFGFSHEYIAQLLNITVGSSKNKISEILKFFGISSRDELLIILHTSEMIFYLYKKVFEIIN 216
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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