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Conserved domains on  [gi|504663916|ref|WP_014851018|]
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ABC-type transport auxiliary lipoprotein family protein [Stutzerimonas nitrititolerans]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-204 5.61e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 184.04  E-value: 5.61e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916   1 MKCLGPLRHLAVLALVGSLGACALLPEGETLRIFLLPgeARTAPQGVAAPLDLTLQIATPNASRALSSARIAVVPQPNQL 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLT--PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916  81 SSYRGARWSDAAPQLLRDRLIEAFQQDGRLPSVVNEDANLYADLGLFSDLRAFQSEYVDGVPQVVIQLQARLVSRHDQRT 160
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 504663916 161 FSSRRFEVRQPSADSSVESVVEAFGRASDALSRELIDWTIAQAR 204
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-204 5.61e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 184.04  E-value: 5.61e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916   1 MKCLGPLRHLAVLALVGSLGACALLPEGETLRIFLLPgeARTAPQGVAAPLDLTLQIATPNASRALSSARIAVVPQPNQL 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLT--PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916  81 SSYRGARWSDAAPQLLRDRLIEAFQQDGRLPSVVNEDANLYADLGLFSDLRAFQSEYVDGVPQVVIQLQARLVSRHDQRT 160
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 504663916 161 FSSRRFEVRQPSADSSVESVVEAFGRASDALSRELIDWTIAQAR 204
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 37-195 7.12e-14

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 66.19  E-value: 7.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916   37 PGEARTAPQGVAAPLdltLQIATPNASRALSSARIAVVPQPNQLSSYRGARWSDAAPQLLRDRLIEAFQQDGRLPSVVNE 116
Cdd:pfam03886   1 PAPAATPAASSPQPQ---LEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916  117 DANL--YADLGLFSDLRAFQSEYvDGvpQVVIQLQARLVSRHDQRTFSSRRFEVRQPSADSSVESVVEAFGRASDALSRE 194
Cdd:pfam03886  78 PWPLggTPDYRLQVDVRRFDGRP-GG--NAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQ 154


                  .
gi 504663916  195 L 195
Cdd:pfam03886 155 I 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-204 5.61e-59

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 184.04  E-value: 5.61e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916   1 MKCLGPLRHLAVLALVGSLGACALLPEGETLRIFLLPgeARTAPQGVAAPLDLTLQIATPNASRALSSARIAVVPQPNQL 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLT--PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916  81 SSYRGARWSDAAPQLLRDRLIEAFQQDGRLPSVVNEDANLYADLGLFSDLRAFQSEYVDGVPQVVIQLQARLVSRHDQRT 160
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 504663916 161 FSSRRFEVRQPSADSSVESVVEAFGRASDALSRELIDWTIAQAR 204
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 37-195 7.12e-14

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 66.19  E-value: 7.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916   37 PGEARTAPQGVAAPLdltLQIATPNASRALSSARIAVVPQPNQLSSYRGARWSDAAPQLLRDRLIEAFQQDGRLPSVVNE 116
Cdd:pfam03886   1 PAPAATPAASSPQPQ---LEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504663916  117 DANL--YADLGLFSDLRAFQSEYvDGvpQVVIQLQARLVSRHDQRTFSSRRFEVRQPSADSSVESVVEAFGRASDALSRE 194
Cdd:pfam03886  78 PWPLggTPDYRLQVDVRRFDGRP-GG--NAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQ 154


                  .
gi 504663916  195 L 195
Cdd:pfam03886 155 I 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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