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Conserved domains on  [gi|504532541|ref|WP_014719643|]
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MULTISPECIES: DUF6124 family protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6124 super family cl45023
Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. ...
 10-74 3.47e-20

Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 85 and 119 amino acids in length.


The actual alignment was detected with superfamily member pfam19619:

Pssm-ID: 437451  Cd Length: 75  Bit Score: 76.22  E-value: 3.47e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504532541  10 TTLFTLIPDVSTETLLANSYETVCSVSTLLLDLSDDLTGKHRDVALAIHQLSELSVLLVGKAMDQ 74
Cdd:pfam19619  5 PDLFIVAPDADNEGLIAHSYETFCSVSTLILDLSEDLEGAHRDIALAIHQLGELGVLLLAKLLDN 69
 
Name Accession Description Interval E-value
DUF6124 pfam19619
Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. ...
 10-74 3.47e-20

Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 85 and 119 amino acids in length.


Pssm-ID: 437451  Cd Length: 75  Bit Score: 76.22  E-value: 3.47e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504532541  10 TTLFTLIPDVSTETLLANSYETVCSVSTLLLDLSDDLTGKHRDVALAIHQLSELSVLLVGKAMDQ 74
Cdd:pfam19619  5 PDLFIVAPDADNEGLIAHSYETFCSVSTLILDLSEDLEGAHRDIALAIHQLGELGVLLLAKLLDN 69
 
Name Accession Description Interval E-value
DUF6124 pfam19619
Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. ...
 10-74 3.47e-20

Family of unknown function (DUF6124); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 85 and 119 amino acids in length.


Pssm-ID: 437451  Cd Length: 75  Bit Score: 76.22  E-value: 3.47e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504532541  10 TTLFTLIPDVSTETLLANSYETVCSVSTLLLDLSDDLTGKHRDVALAIHQLSELSVLLVGKAMDQ 74
Cdd:pfam19619  5 PDLFIVAPDADNEGLIAHSYETFCSVSTLILDLSEDLEGAHRDIALAIHQLGELGVLLLAKLLDN 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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