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Conserved domains on  [gi|504532340|ref|WP_014719442|]
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MULTISPECIES: cytochrome-c oxidase, cbb3-type subunit III [Pseudomonas]

Protein Classification

cytochrome c family protein( domain architecture ID 229496)

cytochrome c family protein is a ubiquitous heme protein in mitochondria and bacteria, possessing a CXXCH motif with covalently attached heme; in both prokaryotes and eukaryotes it functions to transfer electrons from reduced substrates to physiological partners, thereby driving the pathway leading to oxidative phosphorylation and ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DHOR super family cl21467
Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It ...
 28-302 3.30e-88

Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It carries the two characteriztic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.


The actual alignment was detected with superfamily member TIGR00782:

Pssm-ID: 473872 [Multi-domain]  Cd Length: 285  Bit Score: 265.61  E-value: 3.30e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340   28 RKGETKGSVdQTMGHAFDGIEEYDNPLPQWWFMLFAGTLVFAVGYLILYPGLGNWKGVLPGYEdGWTQTKEWDKEMAKAD 107
Cdd:TIGR00782   1 KDPKSQGEV-QTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLL-GWSSRSQVEEEIKKFN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  108 ARFGPIFAKFAAMPVEEVAKDPQALKM----GGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGGSAEAIKATILNGRH 183
Cdd:TIGR00782  79 EKNAAKWAKLAQTPLEDIAKDPELKQYarnaGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  184 ---------AAMPAWGEVLGEDGVKNVAAYVRHDLAKLPlpaDNTADLAAGQAAFSTTCVACHGPQGHGVEAMGAPNLTE 254
Cdd:TIGR00782 159 dpddgdtyvGEMPAFGPLLEEADIKDVASYVMSLSSGKP---KDEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTD 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 504532340  255 pAGFIYGTSLAQLQQTIRHGRQGQMPAQDVLQGNDKVHLLAAYVYSLS 302
Cdd:TIGR00782 236 -DVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLG 282
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 28-302 3.30e-88

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 265.61  E-value: 3.30e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340   28 RKGETKGSVdQTMGHAFDGIEEYDNPLPQWWFMLFAGTLVFAVGYLILYPGLGNWKGVLPGYEdGWTQTKEWDKEMAKAD 107
Cdd:TIGR00782   1 KDPKSQGEV-QTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLL-GWSSRSQVEEEIKKFN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  108 ARFGPIFAKFAAMPVEEVAKDPQALKM----GGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGGSAEAIKATILNGRH 183
Cdd:TIGR00782  79 EKNAAKWAKLAQTPLEDIAKDPELKQYarnaGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  184 ---------AAMPAWGEVLGEDGVKNVAAYVRHDLAKLPlpaDNTADLAAGQAAFSTTCVACHGPQGHGVEAMGAPNLTE 254
Cdd:TIGR00782 159 dpddgdtyvGEMPAFGPLLEEADIKDVASYVMSLSSGKP---KDEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTD 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 504532340  255 pAGFIYGTSLAQLQQTIRHGRQGQMPAQDVLQGNDKVHLLAAYVYSLS 302
Cdd:TIGR00782 236 -DVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLG 282
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
57-207 2.99e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 94.25  E-value: 2.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  57 WWFMLFAGTLVFAVGYLILYPGLGNWKGVLPGYEDGWTQTKEWDKEMAKADARFGPIFAKFAAMPVEEVAKDPQALKMGG 136
Cdd:COG2010   14 GGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAADAPAADAEALARGK 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504532340 137 RLFASNCAVCHGSDAKGAYG-FPNLADsNWRWGGSAEAIKATILNGR-HAAMPAWGEVLGEDGVKNVAAYVRH 207
Cdd:COG2010   94 ALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRpGGAMPAFGGQLSDEEIAALAAYLRS 165
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 37-83 1.84e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 85.29  E-value: 1.84e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504532340   37 DQTMGHAFDGIEEYDNPLPQWWFMLFAGTLVFAVGYLILYPGLGNWK 83
Cdd:pfam14715   2 DETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLGQ 48
PRK13697 PRK13697
cytochrome c6; Provisional
 135-205 1.80e-08

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 51.71  E-value: 1.80e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504532340 135 GGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGG--SAEAIKATILNGRHAaMPAWGEVLGEDGVKNVAAYV 205
Cdd:PRK13697  31 GEQVFSANCASCHAGGKNLVNAGKTLKKADLEKYGmySLEAITAQVTNGKNA-MPAFKDRLSPDQIEDVAAYV 102
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 28-302 3.30e-88

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 265.61  E-value: 3.30e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340   28 RKGETKGSVdQTMGHAFDGIEEYDNPLPQWWFMLFAGTLVFAVGYLILYPGLGNWKGVLPGYEdGWTQTKEWDKEMAKAD 107
Cdd:TIGR00782   1 KDPKSQGEV-QTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLL-GWSSRSQVEEEIKKFN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  108 ARFGPIFAKFAAMPVEEVAKDPQALKM----GGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGGSAEAIKATILNGRH 183
Cdd:TIGR00782  79 EKNAAKWAKLAQTPLEDIAKDPELKQYarnaGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  184 ---------AAMPAWGEVLGEDGVKNVAAYVRHDLAKLPlpaDNTADLAAGQAAFSTTCVACHGPQGHGVEAMGAPNLTE 254
Cdd:TIGR00782 159 dpddgdtyvGEMPAFGPLLEEADIKDVASYVMSLSSGKP---KDEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTD 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 504532340  255 pAGFIYGTSLAQLQQTIRHGRQGQMPAQDVLQGNDKVHLLAAYVYSLS 302
Cdd:TIGR00782 236 -DVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLG 282
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
57-207 2.99e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 94.25  E-value: 2.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  57 WWFMLFAGTLVFAVGYLILYPGLGNWKGVLPGYEDGWTQTKEWDKEMAKADARFGPIFAKFAAMPVEEVAKDPQALKMGG 136
Cdd:COG2010   14 GGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAADAPAADAEALARGK 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504532340 137 RLFASNCAVCHGSDAKGAYG-FPNLADsNWRWGGSAEAIKATILNGR-HAAMPAWGEVLGEDGVKNVAAYVRH 207
Cdd:COG2010   94 ALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRpGGAMPAFGGQLSDEEIAALAAYLRS 165
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 37-83 1.84e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 85.29  E-value: 1.84e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504532340   37 DQTMGHAFDGIEEYDNPLPQWWFMLFAGTLVFAVGYLILYPGLGNWK 83
Cdd:pfam14715   2 DETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLGQ 48
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
130-205 1.56e-13

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 64.35  E-value: 1.56e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504532340  130 QALKMGGRLFASNCAVCHGSDAKGaygfPNLADSNWrwggSAEAIKATILNGRhAAMPAWGEVLGEDGVKNVAAYV 205
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGTGGAG----PSLAGRAL----PPEALVDIIRNGK-GAMPAFGGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
165-304 9.66e-13

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 65.36  E-value: 9.66e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 165 WRWGGSAEAIKATILNGRHAAMPAWGEVLGEDGVKNVAAYVRHDLAKLPL--PADNTADLAAGQAAFSTTCVACHGPQGH 242
Cdd:COG2010   30 VAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAdaPAADAEALARGKALYEQNCAACHGADGK 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504532340 243 GVEAMgAPNLTEPAgfIYGTSLAQLQQTIRHGR-QGQMPAQDVLQGNDKVHLLAAYVYSLSHN 304
Cdd:COG2010  110 GGLGA-APNLTDDA--LYGGDPEALVETILNGRpGGAMPAFGGQLSDEEIAALAAYLRSLSGN 169
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 131-303 3.29e-12

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 64.87  E-value: 3.29e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 131 ALKMGGRLFAS--NCAVCHGSDAKGAYG----FPNLADSNWRWGGSAEAIKATILNGRHAAMPAWGEvlgeDGVKNVAAY 204
Cdd:COG3258   11 AARRGEELFTNglSCASCHLDAGTKPWGvaaaYPAYRARNGKVVTLEDRINGCFTRSMNGKPLPLDS----AEMKALVAY 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 205 VRHDLAKLPL-------------PADNTADLAAGQAAFSTTCVACHGPQGHGVEAMGA----PNLTEPAGFIYGTSLAQL 267
Cdd:COG3258   87 LRWLSRGLPVgvkldgrglpklpKPAASADVERGKALYAERCASCHGADGEGQGRADGqygfPPLWGGDSYNDGAGMARL 166

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 504532340 268 QQTIRHGRQGQMPAQDVLQ-GNDKVHLLAAYVYSLSH 303
Cdd:COG3258  167 GTLADFIKGRNMPLGKPGSlSDDEAWDVAAYVRSLPR 203
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
116-219 3.55e-11

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 58.97  E-value: 3.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 116 KFAAMPVEEVAKDPQAlkmgGRLFASNCAVCHGSDAKG--AYGFPNLAdsnwrwGGSAEAIKATILNGR-----HAAMPA 188
Cdd:COG2863    2 KLALLAAPAAAGDAAR----GKAYAAACAACHGADGEGnpGGGAPRLA------GQHAEYLVAQLKAFRsgarkNGVMPA 71

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504532340 189 WGEVLGEDGVKNVAAYvrhdLAKLPLPADNT 219
Cdd:COG2863   72 IAKGLSDEDIKALAAY----IASLKAPPGAA 98
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
209-308 6.07e-11

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 58.20  E-value: 6.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 209 LAKLPLPADnTADLAAGqAAFSTTCVACHGPQGHGVEAMGAPNLT-EPAGFIYgtslAQLQQtIRHGRQ--GQMPAQDVL 285
Cdd:COG2863    3 LALLAAPAA-AGDAARG-KAYAAACAACHGADGEGNPGGGAPRLAgQHAEYLV----AQLKA-FRSGARknGVMPAIAKG 75

                         90       100
                 ....*....|....*....|...
gi 504532340 286 QGNDKVHLLAAYVYSLSHNADGA 308
Cdd:COG2863   76 LSDEDIKALAAYIASLKAPPGAA 98
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 135-207 3.54e-09

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 52.93  E-value: 3.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  135 GGRLFASNCAVCHGSDAKGAY-GFPNLADSNWRWGGSAEAIKATILNGR------------HAAMPAWGEvLGEDGVKNV 201
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGAGaGGPDLAGLAARYPGDALGAIRENKHAIggggvdraggppGTGMPAFDG-LTDEEIADL 81


                  ....*.
gi 504532340  202 AAYVRH 207
Cdd:pfam00034  82 VAYLLS 87
PetJ COG5677
Cytochrome c6 [Energy production and conversion];
135-205 4.14e-09

Cytochrome c6 [Energy production and conversion];


Pssm-ID: 444391 [Multi-domain]  Cd Length: 112  Bit Score: 53.34  E-value: 4.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 135 GGRLFASNCAVCH-------------GSDAKGAYGFpnladsnwrwgGSAEAIKATILNGRhAAMPAWGEVLGEDGVKNV 201
Cdd:COG5677   31 GAKIFSANCAGCHigggniirrgktlKKEALEKYGM-----------DSLEAIATQVTNGK-NAMPAFKDRLSEEQIEDV 98


                 ....
gi 504532340 202 AAYV 205
Cdd:COG5677   99 AAYV 102
PRK13697 PRK13697
cytochrome c6; Provisional
 135-205 1.80e-08

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 51.71  E-value: 1.80e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504532340 135 GGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGG--SAEAIKATILNGRHAaMPAWGEVLGEDGVKNVAAYV 205
Cdd:PRK13697  31 GEQVFSANCASCHAGGKNLVNAGKTLKKADLEKYGmySLEAITAQVTNGKNA-MPAFKDRLSPDQIEDVAAYV 102
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 125-206 2.44e-06

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 48.28  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 125 VAKDPQALKMGGRLFASNCAVCHGSDAKGAYGfPNLADSNwRWGGSAEAIKATILNGRHA-AMPAWGEVLGEDGVKNVAA 203
Cdd:PRK14486 208 FATDVAAIAKGKALYDANCAACHGDEAQGQEG-VALNDID-DGDLPDAAYFGMIKGGSDAkGMPGFGGDLSDDDIWAIVA 285


                 ...
gi 504532340 204 YVR 206
Cdd:PRK14486 286 YIR 288
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
220-298 9.78e-06

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 42.78  E-value: 9.78e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504532340  220 ADLAAGQAAFSTTCVACHGPQGHGveamgaPNLTEpagfiYGTSLAQLQQTIRHGRQGqMPAQDVLQGNDKVHLLAAYV 298
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGTGGAG------PSLAG-----RALPPEALVDIIRNGKGA-MPAFGGDLSDEELEALAAYL 67
petJ CHL00183
cytochrome c553; Provisional
 132-205 8.27e-05

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 41.30  E-value: 8.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 132 LKMGGRLFASNCAVCH-------------GSDAKGAYGFpnladsnwrwgGSAEAIKATILNGRHAaMPAWGEVLGEDGV 198
Cdd:CHL00183  26 LDNGEQIFSANCAACHaggnnvimpektlKKDALEANSM-----------NSIEAITYQVTNGKNA-MPAFGGRLSDEDI 93


                 ....*..
gi 504532340 199 KNVAAYV 205
Cdd:CHL00183  94 EDVANYV 100
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 223-302 1.36e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 40.21  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  223 AAGQAAFSTTCVACHGPQGHGVEAMGaPNLtepAGFIYGTSLAQLQQTIRHGR--------------QGQMPAQDVLqGN 288
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGG-PDL---AGLAARYPGDALGAIRENKHaiggggvdraggppGTGMPAFDGL-TD 75

                          90
                  ....*....|....
gi 504532340  289 DKVHLLAAYVYSLS 302
Cdd:pfam00034  76 EEIADLVAYLLSLS 89
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
113-190 3.07e-04

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 39.66  E-value: 3.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340 113 IFAKFAAMPVEEV----AKDPQALKMGGRLFASNCAVCHGSDAKGAYGFPNLADsnW--RWGGSAEAIKATILNGrHAAM 186
Cdd:COG3245    9 LALALRIAPVGAValaaAAAAAAARSGEAVYNATCAACHATGVAGAPKLGDKAA--WapRIAKGMDTLLKHAING-FNAM 85


                 ....
gi 504532340 187 PAWG 190
Cdd:COG3245   86 PPKG 89
c550_PedF TIGR04494
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ...
 128-205 5.20e-04

cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.


Pssm-ID: 275287  Cd Length: 133  Bit Score: 39.30  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504532340  128 DPQALKMGGRLFASNCAVCHGSDAKGAYGFPNLADSNWRWGGSaEAIKATILNGR----HAAMPAWGEVLGEDGVKNVAA 203
Cdd:TIGR04494  47 HKEAIRIGASAYNQNCARCHGLEAISGGIAPDLRKLDAGEDGD-EWFVERVRHGAvrdgRVYMPPFEGILSQEALWAIRT 125


                  ..
gi 504532340  204 YV 205
Cdd:TIGR04494 126 YL 127
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
 220-254 3.36e-03

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 36.95  E-value: 3.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 504532340  220 ADLAAGQAAFSTTCVACHGPQGHGVEAmgAPNLTE 254
Cdd:TIGR02603   1 GDAARGKAVFAKVCYLCHRIGGQGVDF--GPNLTT 33
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
220-253 6.01e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 35.63  E-value: 6.01e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 504532340 220 ADLAAGQAAFSTTCVACHGPQGHGVEAMGaPNLT 253
Cdd:COG3474    1 GDAAAGEKLFNRKCAACHSVDGGAGNRVG-PNLN 33
CytM COG5676
Cytochrome cM [Energy production and conversion];
135-160 9.18e-03

Cytochrome cM [Energy production and conversion];


Pssm-ID: 444390 [Multi-domain]  Cd Length: 124  Bit Score: 35.69  E-value: 9.18e-03
                         10        20
                 ....*....|....*....|....*.
gi 504532340 135 GGRLFASNCAVCHGSDAKGAYGfPNL 160
Cdd:COG5676   56 GHAIFQINCAGCHGLQADGNVG-PSL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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