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Conserved domains on  [gi|504529213|ref|WP_014716315|]
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MULTISPECIES: YheV family putative zinc ribbon protein [Pseudomonas]

Protein Classification

YheV family putative metal-binding protein( domain architecture ID 10560071)

YheV family putative metal-binding protein is a DUF2387 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2387 pfam09526
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 8-83 1.87e-38

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


:

Pssm-ID: 430664  Cd Length: 72  Bit Score: 122.60  E-value: 1.87e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504529213   8 TKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQglSVPKELGTRVNTTALkaPADPKVQAVQFF 83
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRVNVSAP--AADPQVQTVQFF 72
 
Name Accession Description Interval E-value
DUF2387 pfam09526
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 8-83 1.87e-38

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


Pssm-ID: 430664  Cd Length: 72  Bit Score: 122.60  E-value: 1.87e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504529213   8 TKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQglSVPKELGTRVNTTALkaPADPKVQAVQFF 83
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRVNVSAP--AADPQVQTVQFF 72
COG3529 COG3529
Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 8-83 3.69e-27

Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 442751  Cd Length: 67  Bit Score: 93.81  E-value: 3.69e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504529213  8 TKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQGLSVPKElgtrvnttalkapadPKVQAVQFF 83
Cdd:COG3529   4 MKKRFIAGAVCPKCQAMDTLVLWRENGVEVRECVSCGYTETQPDEEVEAATE---------------AEEQVIGIF 64
TIGR02443 TIGR02443
conserved hypothetical metal-binding protein; Members of this family are small proteins, about ...
 7-65 5.30e-25

conserved hypothetical metal-binding protein; Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.


Pssm-ID: 131496  Cd Length: 59  Bit Score: 88.27  E-value: 5.30e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504529213   7 ITKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQGLSVpkelGTRVN 65
Cdd:TIGR02443  1 KIKKRFIAGAVCPACSAQDTLAMWKENNIELVECVECGYQEQQKDQSVSV----HERAN 55
 
Name Accession Description Interval E-value
DUF2387 pfam09526
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 8-83 1.87e-38

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


Pssm-ID: 430664  Cd Length: 72  Bit Score: 122.60  E-value: 1.87e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504529213   8 TKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQglSVPKELGTRVNTTALkaPADPKVQAVQFF 83
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRVNVSAP--AADPQVQTVQFF 72
COG3529 COG3529
Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 8-83 3.69e-27

Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 442751  Cd Length: 67  Bit Score: 93.81  E-value: 3.69e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504529213  8 TKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQGLSVPKElgtrvnttalkapadPKVQAVQFF 83
Cdd:COG3529   4 MKKRFIAGAVCPKCQAMDTLVLWRENGVEVRECVSCGYTETQPDEEVEAATE---------------AEEQVIGIF 64
TIGR02443 TIGR02443
conserved hypothetical metal-binding protein; Members of this family are small proteins, about ...
 7-65 5.30e-25

conserved hypothetical metal-binding protein; Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.


Pssm-ID: 131496  Cd Length: 59  Bit Score: 88.27  E-value: 5.30e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504529213   7 ITKKQFIAGAVCPACSEPDKLKMWTENSVPHRECVACGYTDTLNDQGLSVpkelGTRVN 65
Cdd:TIGR02443  1 KIKKRFIAGAVCPACSAQDTLAMWKENNIELVECVECGYQEQQKDQSVSV----HERAN 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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