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Conserved domains on  [gi|504408406|ref|WP_014595508|]
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DUF2188 domain-containing protein [Stutzerimonas stutzeri]

Protein Classification

DUF2188 domain-containing protein( domain architecture ID 10561675)

DUF2188 domain-containing protein such as Bacillus subtilis YycD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2188 pfam09954
Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ...
 4-63 7.36e-11

Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ribosome-associating protein predicted to mediate translation inhibition alongside repair of DNA damage or restriction in conflict contexts. A subset of this family contains a conserved histidine residue, raising the possibility that it directly acts as a RNase or in RNA end-processing.


:

Pssm-ID: 378323  Cd Length: 62  Bit Score: 51.91  E-value: 7.36e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504408406   4 YHIS-ATDSGWELRKQGATRASKTAATKDEMLQITAAFL-EGRTASVKIHKKDGTLQEERTY 63
Cdd:pfam09954  1 YHVVpRDDGGWAVKREGASRASKTFDTQAEAIEAARELAkNQGGSELVIHGRDGKIRERNSY 62
 
Name Accession Description Interval E-value
DUF2188 pfam09954
Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ...
 4-63 7.36e-11

Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ribosome-associating protein predicted to mediate translation inhibition alongside repair of DNA damage or restriction in conflict contexts. A subset of this family contains a conserved histidine residue, raising the possibility that it directly acts as a RNase or in RNA end-processing.


Pssm-ID: 378323  Cd Length: 62  Bit Score: 51.91  E-value: 7.36e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504408406   4 YHIS-ATDSGWELRKQGATRASKTAATKDEMLQITAAFL-EGRTASVKIHKKDGTLQEERTY 63
Cdd:pfam09954  1 YHVVpRDDGGWAVKREGASRASKTFDTQAEAIEAARELAkNQGGSELVIHGRDGKIRERNSY 62
 
Name Accession Description Interval E-value
DUF2188 pfam09954
Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ...
 4-63 7.36e-11

Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ribosome-associating protein predicted to mediate translation inhibition alongside repair of DNA damage or restriction in conflict contexts. A subset of this family contains a conserved histidine residue, raising the possibility that it directly acts as a RNase or in RNA end-processing.


Pssm-ID: 378323  Cd Length: 62  Bit Score: 51.91  E-value: 7.36e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504408406   4 YHIS-ATDSGWELRKQGATRASKTAATKDEMLQITAAFL-EGRTASVKIHKKDGTLQEERTY 63
Cdd:pfam09954  1 YHVVpRDDGGWAVKREGASRASKTFDTQAEAIEAARELAkNQGGSELVIHGRDGKIRERNSY 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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