NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|504408265|ref|WP_014595367|]
View 

ABC-type transport auxiliary lipoprotein family protein [Stutzerimonas stutzeri]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-196 4.08e-58

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 181.73  E-value: 4.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   1 MSRLALFRPLALACVLGTLAACTLLPEAEPIRVYLLPTAEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISS 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265  81 YQGARWSDAAPTLLRDRLIEQFRQSGPV-AVSNEDSNLFAELELFSELRAFQSEYIDGQPQVLVRLDAQLASATDQRILA 159
Cdd:COG3218   81 YAGARWADPPPRLLQDLLVEALEASGRFrAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 504408265 160 SRRFEIRQPSAGPQLESVVAAFGQASDELSRQLQCWT 196
Cdd:COG3218  161 SRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWL 197
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-196 4.08e-58

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 181.73  E-value: 4.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   1 MSRLALFRPLALACVLGTLAACTLLPEAEPIRVYLLPTAEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISS 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265  81 YQGARWSDAAPTLLRDRLIEQFRQSGPV-AVSNEDSNLFAELELFSELRAFQSEYIDGQPQVLVRLDAQLASATDQRILA 159
Cdd:COG3218   81 YAGARWADPPPRLLQDLLVEALEASGRFrAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 504408265 160 SRRFEIRQPSAGPQLESVVAAFGQASDELSRQLQCWT 196
Cdd:COG3218  161 SRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWL 197
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 39-192 2.17e-16

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 72.74  E-value: 2.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   39 AEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISSYQGARWSDAAPTLLRDRLIEQFRQSGP---VAVSNEDS 115
Cdd:pfam03886   2 APAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPsrrVAAFPWPL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504408265  116 NLFAELELFSELRAFQSEYidgQPQVLVRLDAQLASATDQRILASRRFEIRQPSAGPQLESVVAAFGQASDELSRQL 192
Cdd:pfam03886  82 GGTPDYRLQVDVRRFDGRP---GGNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-196 4.08e-58

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 181.73  E-value: 4.08e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   1 MSRLALFRPLALACVLGTLAACTLLPEAEPIRVYLLPTAEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISS 80
Cdd:COG3218    1 MTPRRLLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265  81 YQGARWSDAAPTLLRDRLIEQFRQSGPV-AVSNEDSNLFAELELFSELRAFQSEYIDGQPQVLVRLDAQLASATDQRILA 159
Cdd:COG3218   81 YAGARWADPPPRLLQDLLVEALEASGRFrAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 504408265 160 SRRFEIRQPSAGPQLESVVAAFGQASDELSRQLQCWT 196
Cdd:COG3218  161 SRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWL 197
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 39-192 2.17e-16

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 72.74  E-value: 2.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   39 AEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISSYQGARWSDAAPTLLRDRLIEQFRQSGP---VAVSNEDS 115
Cdd:pfam03886   2 APAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPsrrVAAFPWPL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504408265  116 NLFAELELFSELRAFQSEYidgQPQVLVRLDAQLASATDQRILASRRFEIRQPSAGPQLESVVAAFGQASDELSRQL 192
Cdd:pfam03886  82 GGTPDYRLQVDVRRFDGRP---GGNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 6-192 1.57e-14

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 68.86  E-value: 1.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265   6 LFRPLALACVLGTLAACTLLPeaePIRVYLL-PTAEATGQQGERLQQALRIHTPHASRILAGPRIAVVPDGNQISSYQGA 84
Cdd:COG3009    4 PLRLLLLLLLALLLAACASSP---PTRYYTLpPPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLVIAENH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504408265  85 RWSDAAPTLLRDRLIEQFRQSGP---VAVSNEDSNLFAELELFSELRAFQSEYidgQPQVLVRLDAQLASATDQRILASR 161
Cdd:COG3009   81 RWAEPLSDQLTRALAANLAARLPgarVAAQPWPLAGRPDYRLRVDVTRFDGRP---DGQAVLSAQWSLRRGGGGGPLLSR 157

                        170       180       190
                 ....*....|....*....|....*....|.
gi 504408265 162 RFEIRQPSAGPQLESVVAAFGQASDELSRQL 192
Cdd:COG3009  158 RFSIEEPLAGDGYDALVAALSQALAQLADQI 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH