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Conserved domains on  [gi|504406657|ref|WP_014593759|]
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MULTISPECIES: acyl-homoserine-lactone synthase [Pantoea]

Protein Classification

GNAT family protein( domain architecture ID 106742)

GNAT (Gcn5-related N-acetyltransferase) family protein similar to N-acetyltransferases that catalyze the transfer of an acetyl group from acetyl-CoA to a substrate

PubMed:  15581578

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NAT_SF super family cl17182
N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of ...
11-186 1.67e-58

N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase which catalyze the transfer of an acetyl group to a substrate. The mechanism is an ordered Bi-Bi ternary complex kinetic mechanism for most GNATs: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and then CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/ph enylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.


The actual alignment was detected with superfamily member pfam00765:

Pssm-ID: 473072  Cd Length: 182  Bit Score: 181.94  E-value: 1.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   11 ELQTTRSEELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGIC-EGQLVCSVRFTCLDRPNMITHTFRHCFDDV 89
Cdd:pfam00765   3 LRSHAKLKEMFRLRKRVFKDRLGWDVQIIQGMERDQYDNLDPTYLLGVKdEGRVIGCVRLLETKGPNMLTGTFSSYLDGE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   90 PLPAYGT--ESSRFFVDKARARELLGEH-YPVSQVLFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGWQISVVKEAFLT 166
Cdd:pfam00765  83 NIPRSGNywESSRFCVDTDLVSGRAGNSiAPATSTLFLGMIEYAMSAGYTGIVTIVDHPMLRILKRSGWPISYVGQPLSE 162
                         170       180
                  ....*....|....*....|
gi 504406657  167 EKERIYLLTLPAGEADKQQL 186
Cdd:pfam00765 163 GKEKAYAALLPCDDESVEAL 182
 
Name Accession Description Interval E-value
Autoind_synth pfam00765
Autoinducer synthase;
11-186 1.67e-58

Autoinducer synthase;


Pssm-ID: 366292  Cd Length: 182  Bit Score: 181.94  E-value: 1.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   11 ELQTTRSEELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGIC-EGQLVCSVRFTCLDRPNMITHTFRHCFDDV 89
Cdd:pfam00765   3 LRSHAKLKEMFRLRKRVFKDRLGWDVQIIQGMERDQYDNLDPTYLLGVKdEGRVIGCVRLLETKGPNMLTGTFSSYLDGE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   90 PLPAYGT--ESSRFFVDKARARELLGEH-YPVSQVLFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGWQISVVKEAFLT 166
Cdd:pfam00765  83 NIPRSGNywESSRFCVDTDLVSGRAGNSiAPATSTLFLGMIEYAMSAGYTGIVTIVDHPMLRILKRSGWPISYVGQPLSE 162
                         170       180
                  ....*....|....*....|
gi 504406657  167 EKERIYLLTLPAGEADKQQL 186
Cdd:pfam00765 163 GKEKAYAALLPCDDESVEAL 182
LasI COG3916
N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) [Signal transduction ...
2-186 1.79e-54

N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) [Signal transduction mechanisms];


Pssm-ID: 443121 [Multi-domain]  Cd Length: 201  Bit Score: 172.42  E-value: 1.79e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   2 LELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGI-CEGQLVCSVRFTCLDRPNMITH 80
Cdd:COG3916    1 FEIISADNLHLHPELLDEMFRLRHRVFVEELGWEVPVPDGLEIDQYDDPSAHYLLAHdEDGRVVGCVRLLPTTGPYMLED 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657  81 TFRHCFDDVPLPAYGT--ESSRFFVDKARARELLGEH--YPVSQVLFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGWQ 156
Cdd:COG3916   81 VFPDLLDGGPAPRRPDiwEISRFAVDKDFRRRLGERArrPRVALALFLAMVEYALENGITHLVAVMEPRLERLLRRLGWP 160
                        170       180       190
                 ....*....|....*....|....*....|
gi 504406657 157 ISVVKEAFLTEKERIYLLTLPAGEADKQQL 186
Cdd:COG3916  161 FEPLGPPVEIGGERAPAYLIDVDEETLARL 190
PRK13834 PRK13834
putative autoinducer synthesis protein; Provisional
18-155 3.65e-23

putative autoinducer synthesis protein; Provisional


Pssm-ID: 172361  Cd Length: 207  Bit Score: 92.05  E-value: 3.65e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657  18 EELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGICEGQLV--CsVRFTCLDRPNMITHTFRHCFDDVPLPAYG 95
Cdd:PRK13834  19 KQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVagC-ARLLPAIGPTMLAQVFPQLLPAGRLNAHP 97
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504406657  96 T--ESSRFFVDKArarelLGEHYPVSQV------LFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGW 155
Cdd:PRK13834  98 AmiESSRFCVDTA-----LAEGRGGGQLheatltMFAGIIEWSMANGYTEIVTATDLRFERILARAGW 160
 
Name Accession Description Interval E-value
Autoind_synth pfam00765
Autoinducer synthase;
11-186 1.67e-58

Autoinducer synthase;


Pssm-ID: 366292  Cd Length: 182  Bit Score: 181.94  E-value: 1.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   11 ELQTTRSEELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGIC-EGQLVCSVRFTCLDRPNMITHTFRHCFDDV 89
Cdd:pfam00765   3 LRSHAKLKEMFRLRKRVFKDRLGWDVQIIQGMERDQYDNLDPTYLLGVKdEGRVIGCVRLLETKGPNMLTGTFSSYLDGE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   90 PLPAYGT--ESSRFFVDKARARELLGEH-YPVSQVLFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGWQISVVKEAFLT 166
Cdd:pfam00765  83 NIPRSGNywESSRFCVDTDLVSGRAGNSiAPATSTLFLGMIEYAMSAGYTGIVTIVDHPMLRILKRSGWPISYVGQPLSE 162
                         170       180
                  ....*....|....*....|
gi 504406657  167 EKERIYLLTLPAGEADKQQL 186
Cdd:pfam00765 163 GKEKAYAALLPCDDESVEAL 182
LasI COG3916
N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) [Signal transduction ...
2-186 1.79e-54

N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) [Signal transduction mechanisms];


Pssm-ID: 443121 [Multi-domain]  Cd Length: 201  Bit Score: 172.42  E-value: 1.79e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657   2 LELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGI-CEGQLVCSVRFTCLDRPNMITH 80
Cdd:COG3916    1 FEIISADNLHLHPELLDEMFRLRHRVFVEELGWEVPVPDGLEIDQYDDPSAHYLLAHdEDGRVVGCVRLLPTTGPYMLED 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657  81 TFRHCFDDVPLPAYGT--ESSRFFVDKARARELLGEH--YPVSQVLFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGWQ 156
Cdd:COG3916   81 VFPDLLDGGPAPRRPDiwEISRFAVDKDFRRRLGERArrPRVALALFLAMVEYALENGITHLVAVMEPRLERLLRRLGWP 160
                        170       180       190
                 ....*....|....*....|....*....|
gi 504406657 157 ISVVKEAFLTEKERIYLLTLPAGEADKQQL 186
Cdd:COG3916  161 FEPLGPPVEIGGERAPAYLIDVDEETLARL 190
PRK13834 PRK13834
putative autoinducer synthesis protein; Provisional
18-155 3.65e-23

putative autoinducer synthesis protein; Provisional


Pssm-ID: 172361  Cd Length: 207  Bit Score: 92.05  E-value: 3.65e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504406657  18 EELYKLRKKTFSDRLGWEVVCSQGMESDEFDGPGTRYILGICEGQLV--CsVRFTCLDRPNMITHTFRHCFDDVPLPAYG 95
Cdd:PRK13834  19 KQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVagC-ARLLPAIGPTMLAQVFPQLLPAGRLNAHP 97
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504406657  96 T--ESSRFFVDKArarelLGEHYPVSQV------LFLAMVNWAQNNAYTHIYTIVSRAMLKILKRSGW 155
Cdd:PRK13834  98 AmiESSRFCVDTA-----LAEGRGGGQLheatltMFAGIIEWSMANGYTEIVTATDLRFERILARAGW 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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