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Conserved domains on  [gi|504305612|ref|WP_014492714|]
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MULTISPECIES: ABC transporter permease [Bradyrhizobium]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-261 1.97e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 1.97e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   3 RTSPARIVLYVISALVLVYLILPVLIIAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPC 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  83 GVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPA 162
Cdd:COG1177   81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 163 QEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLM 242
Cdd:COG1177  161 LEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLL 240

                        250
                 ....*....|....*....
gi 504305612 243 TAASFMLVLLASTRGKKGG 261
Cdd:COG1177  241 ILLSLLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-261 1.97e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 1.97e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   3 RTSPARIVLYVISALVLVYLILPVLIIAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPC 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  83 GVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPA 162
Cdd:COG1177   81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 163 QEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLM 242
Cdd:COG1177  161 LEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLL 240

                        250
                 ....*....|....*....
gi 504305612 243 TAASFMLVLLASTRGKKGG 261
Cdd:COG1177  241 ILLSLLLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 17-259 5.03e-34

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 123.56  E-value: 5.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  17 LVLVYLILPVLIIAPISFSSARFlTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAAYAISQSKLR 96
Cdd:PRK09500  12 LVYAYLYIPIIILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  97 IMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLR 176
Cdd:PRK09500  91 GKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 177 SFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLASTR 256
Cdd:PRK09500 171 ILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLL 250


                 ...
gi 504305612 257 GKK 259
Cdd:PRK09500 251 ARD 253
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-219 1.08e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 76.26  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612    7 ARIVLYVISALVLVYLILPVLIIAPISF--SSARFLtfpppsfSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGV 84
Cdd:TIGR03262   3 ARLLLAGMILALLLFLLLPLLALLTKSVydSDGDFI-------GLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   85 AAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATM---------PGLVLANVMLGLPYVVISVLAG 155
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLlggfsiygfWGIVIGEVFYTFPHALMILVTA 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504305612  156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFIsGGQYQPL 219
Cdd:TIGR03262 156 LSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI-GGDYNVL 218
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-241 9.88e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 9.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  66 RVTLTVAFFTVLIATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGL 145
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 146 ----PYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTK 221
Cdd:cd06261   82 lliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGT 161

                        170       180
                 ....*....|....*....|
gi 504305612 222 RMFTALRDEIDPTIAAISTL 241
Cdd:cd06261  162 GLLLIFAILFPGDLGVAAAV 181
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 107-253 1.09e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  107 LPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQI 186
Cdd:pfam00528  26 LLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNA 105

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504305612  187 KSSVVAGGIFAFISAMDETIVALFIsgGQYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLA 253
Cdd:pfam00528 106 LPPILTGLALAFGGALGGAVLLEFL--GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-261 1.97e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 1.97e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   3 RTSPARIVLYVISALVLVYLILPVLIIAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPC 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  83 GVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPA 162
Cdd:COG1177   81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 163 QEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLM 242
Cdd:COG1177  161 LEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLL 240

                        250
                 ....*....|....*....
gi 504305612 243 TAASFMLVLLASTRGKKGG 261
Cdd:COG1177  241 ILLSLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-259 7.00e-37

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 136.44  E-value: 7.00e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   7 ARIVLYVISALVLVYLILPVLIIAPISFSsarflTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAA 86
Cdd:COG1178  287 RWLALALCLLLVLLGLLLPLLALLLWSLT-----KALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLL 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  87 AYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAK---VGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQ 163
Cdd:COG1178  362 AYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSL 441

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 164 EMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLMT 243
Cdd:COG1178  442 EEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLV 521

                        250
                 ....*....|....*.
gi 504305612 244 AASFMLVLLASTRGKK 259
Cdd:COG1178  522 LVSLLPVLLLERLLGR 537
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 17-259 5.03e-34

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 123.56  E-value: 5.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  17 LVLVYLILPVLIIAPISFSSARFlTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAAYAISQSKLR 96
Cdd:PRK09500  12 LVYAYLYIPIIILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  97 IMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLR 176
Cdd:PRK09500  91 GKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 177 SFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLASTR 256
Cdd:PRK09500 171 ILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLL 250


                 ...
gi 504305612 257 GKK 259
Cdd:PRK09500 251 ARD 253
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-261 3.30e-30

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 114.09  E-value: 3.30e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   1 MTRTSPARIVLYVISALVLVYL----ILPVLIIAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTV 76
Cdd:COG1176    1 MSAALRRRLRPLLLLLPALLWLllffVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  77 LIATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVA-----------------TMPGLVLA 139
Cdd:COG1176   81 LICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNslllalglideplrllyTEFAVVIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 140 NVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPL 219
Cdd:COG1176  161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 504305612 220 TKRMFTALRDEID-PTIAAISTLMTAASFMLVLLASTRGKKGG 261
Cdd:COG1176  241 GNLIYQQFLSALNwPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-252 3.57e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 114.87  E-value: 3.57e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   2 TRTSPARIVLYVISALVLVYLILPVLIIAPISFSSArfltfpppsfsLRWYQQYFANPAWMQATRVTLTVAFFTVLIATP 81
Cdd:COG1178    4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  82 CGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVAT---------------MPGLVLANVMLGLP 146
Cdd:COG1178   73 LGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTllralfgleppdiygLGGIILVLVLFNYP 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 147 YVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDE-TIVALFisGGQYQPLTKRMFT 225
Cdd:COG1178  153 YVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADfGTPLVL--GGGYTTLTTAIYQ 230

                        250       260
                 ....*....|....*....|....*...
gi 504305612 226 ALRDEIDPTIAA-ISTLMTAASFMLVLL 252
Cdd:COG1178  231 AWLGDFDLGAAAaLALVLLLLVLLLLLL 258
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-253 3.73e-24

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 97.86  E-value: 3.73e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   2 TRTSPARIVLYVISALVLVYLILPVLIIAPISFSS-----ARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTV 76
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  77 LIATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGL 156
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 157 QSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVAL-FISGGQYQPLTK--RMFTALRDEIDP 233
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPVglASFQGQYGTDWG 247

                        250       260
                 ....*....|....*....|
gi 504305612 234 TIAAISTLMTAASFMLVLLA 253
Cdd:COG0395  248 LLMAAAVIATLPVLILFLFL 267
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 8-252 6.39e-22

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 91.74  E-value: 6.39e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   8 RIVLYVISALVLVYLILPVLIIApisfssARFLTFPPPSFSlrwyqQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAA 87
Cdd:COG0555   10 GLTLGLTLLYLSLIVLLPLAALV------LKAAGLGWAEFW-----AVLTSPRVLAALKLSLGTALIAALINLVFGLPLA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  88 YAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVA------------TMPGLVLANVMLGLPYVVISVLAG 155
Cdd:COG0555   79 WVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGqllaplgikvafTPLGIVLAQTFVSLPFVVRTVQPV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQY---QPLTKRMFTALrDEID 232
Cdd:COG0555  159 LEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPmktEILPLLIYLKL-EEGD 237

                        250       260
                 ....*....|....*....|.
gi 504305612 233 PTIA-AISTLMTAASFMLVLL 252
Cdd:COG0555  238 YAGAtAIALVLLLISFLLLLL 258
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 5-253 1.65e-19

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 85.29  E-value: 1.65e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   5 SPARIVLYVISalvLVYLILPVLIIAPISFSSARFLTFPPpSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGV 84
Cdd:PRK10592   9 SPWRIVILVLG---FTFLYAPMLMLVIYSFNSSKLVTVWA-GWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGT 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  85 AAAYAISQ-SKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPG------LVLANVMLGLPYVVISVLAGLQ 157
Cdd:PRK10592  85 IAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPAdrgmltIWLAHVTFCTAYVAVVISSRLR 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 158 SFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEIDPTIAA 237
Cdd:PRK10592 165 ELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINA 244

                        250
                 ....*....|....*.
gi 504305612 238 ISTLMTAASFMLVLLA 253
Cdd:PRK10592 245 LATLILGVVGIVGFIA 260
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-202 5.25e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 81.33  E-value: 5.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  16 ALVLVYLILPVLIIAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAAYAISQsKL 95
Cdd:COG1175   29 LLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  96 RIMRIMHMALLLPLVVPIIITAVGIFFVYAK-VGLVAT-------------------MPGLVLANVMLGLPYVVISVLAG 155
Cdd:COG1175  108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPdYGLLNAllgalglepinwlgdpslaLPAVIIVTVWKGTGFNMLIFLAG 187

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 504305612 156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAM 202
Cdd:COG1175  188 LQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAL 234
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-219 1.08e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 76.26  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612    7 ARIVLYVISALVLVYLILPVLIIAPISF--SSARFLtfpppsfSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGV 84
Cdd:TIGR03262   3 ARLLLAGMILALLLFLLLPLLALLTKSVydSDGDFI-------GLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   85 AAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATM---------PGLVLANVMLGLPYVVISVLAG 155
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLlggfsiygfWGIVIGEVFYTFPHALMILVTA 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504305612  156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFIsGGQYQPL 219
Cdd:TIGR03262 156 LSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI-GGDYNVL 218
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 3-220 1.27e-13

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 69.90  E-value: 1.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   3 RTSPARIVLYVISALVLVYLILPVLIIAPISF-SSARFLTFP---PPSFSLRWYQQyfANPAWMQATRVTLTVAFFTVLI 78
Cdd:COG4135  294 RGLGDPALRRLGLALMLLIALLSLLGLALLLLwSFAGRWRFPdalPSSWTLRFWQR--AAPGLLEPLGNTLLLALASALI 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  79 ATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQS 158
Cdd:COG4135  372 ALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRA 451

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504305612 159 FDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLT 220
Cdd:COG4135  452 LDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATLT 513
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-241 9.88e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 9.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  66 RVTLTVAFFTVLIATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGL 145
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 146 ----PYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTK 221
Cdd:cd06261   82 lliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGT 161

                        170       180
                 ....*....|....*....|
gi 504305612 222 RMFTALRDEIDPTIAAISTL 241
Cdd:cd06261  162 GLLLIFAILFPGDLGVAAAV 181
cysT CHL00187
sulfate transport protein; Provisional
 1-204 1.38e-08

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 53.86  E-value: 1.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   1 MTRTSPARIVLYVISALVLVyLILPVLIIapisfssarFLTFPPPSFSLRWyqQYFANPAWMQATRVTLTVAFFTVLIAT 80
Cdd:CHL00187   5 NFSLKFSSIYIISLSYIIFL-LVLPILAL---------LIKASQQPWSDFL--QKATEPIALSAYSLTLSMALIAALING 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  81 PCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVG------------LVATMPGLVLANVMLGLPYV 148
Cdd:CHL00187  73 FFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGwighllshlgiqIVFTKLGVLLAMIFVSFPFV 152

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 504305612 149 VISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDE 204
Cdd:CHL00187 153 VRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 1-193 4.42e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 52.46  E-value: 4.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   1 MTRTSPARIVLYVISALVLVYLILPVLIIAPISFSSARFLtfPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIAT 80
Cdd:COG0600    1 MTTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLL--PSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  81 PCGVAAAYAISQSKL---RIMRIMHMALLLPLV--VPIIITAVGIFFVyAKVGLVATMpglvlanvmlGLPYVVISVLAG 155
Cdd:COG0600   79 LLGVPLGLLLGLSRLlrrLLDPLLVFLRPIPPLalAPLLILWFGIGEA-SKIFVIFLG----------AFFPILLNTAAG 147

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 504305612 156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAG 193
Cdd:COG0600  148 VRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 2-210 4.55e-08

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 53.30  E-value: 4.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   2 TRTSPARIVLYVISALVLVYLILPVLIIAPISFSSARFLTFpppsfslrwyqqyfANPAWMQATRVTLTVAFFTVLIATP 81
Cdd:PRK09433 272 QDSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASLLRVL--------------AQPALWQALWTSLRIALAAALLAVV 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  82 CGVAAAYAISQSKLR----IMRIMHMALLLPLVVPIIITAVGIFF-VYAKVGLVATMPGLV-LANVMLGLPYVVISVLAG 155
Cdd:PRK09433 338 LTMMLLWSSRELRLRqrklAAQALELSGMLILAMPGIVLATGLFLlLRNTTDLPASALGIViLTNALMALPYALRVLEPP 417

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 504305612 156 LQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAM-DETIVALF 210
Cdd:PRK09433 418 MRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLgDFGVIALF 473
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 3-218 1.12e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 52.38  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612    3 RTSPARIVLYVISALVLVYLILPVLIIAPIsfssARFLTFPP--PSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIAT 80
Cdd:TIGR03262 274 KPNRVRDAACLVYCAIISAALLAVVGMAVY----ASLVKFWPynLSLTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGT 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   81 PCGVAAAYAISQSK-LRIMR-IMHMALLLPLVVPIIITAVGIFFVYAKV-----GLVATMPGLVLANVMLGLPYVVISVL 153
Cdd:TIGR03262 350 ILVFGGAYLIEKTRgFGLLRgVLRFLAILPMAVPGLVLGLGYIFFFNAPtnplnGLYGTMALLVLCTVVHFYTVSHLTAV 429

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504305612  154 AGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQP 218
Cdd:TIGR03262 430 TALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKL 494
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 16-252 1.42e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 51.54  E-value: 1.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  16 ALVLVYLILPVLIIAPISFSSARFLTFPPpsfslrwYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAAYAISQSKL 95
Cdd:PRK15050  33 LVLAPLVVYPLVRVVLQSLTGEHGLGLAT-------YRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPF 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  96 RIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLV------------------ATMPGLVLANVMLGLPYVVISVLAGLQ 157
Cdd:PRK15050 106 PGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVnialqrlfgleappldflYSPGGVILAEITFYTPFVVRPLLAAFA 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 158 SFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISGGQYQPLTKRMFTALRDEID-PTIA 236
Cdd:PRK15050 186 QLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDyPTAC 265

                        250
                 ....*....|....*.
gi 504305612 237 AISTLMTAASFMLVLL 252
Cdd:PRK15050 266 AIAVVNLALSLGLYAL 281
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
46-255 1.50e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 51.29  E-value: 1.50e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  46 SFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIATPCGVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYA 125
Cdd:PRK10971  41 QMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 126 KVG------------LVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAG 193
Cdd:PRK10971 121 VNGwygewlakfdikVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAG 200

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504305612 194 GIFAFISAMDETIVALFISGG---QYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLAST 255
Cdd:PRK10971 201 VALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINT 265
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 45-185 9.84e-07

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 48.15  E-value: 9.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  45 PSFSLRWYQQYFanPAWMQATRVTLTVAFFTVLIATPCGVAAAyaisqsklrIMRIMHMALLLPLV---------VPIII 115
Cdd:COG0765    1 MFFDFSVLLDYL--PLLLEGLLVTLLLTVLAIVLGLVLGLLLA---------LARLSPNPVLRWLAtayveffrgTPLLV 69

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504305612 116 TAVGIFFVYAKVGLvaTMPGLVLANVMLGL---PYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQ 185
Cdd:COG0765   70 QLFFIYFGLPLLGI--DLSPFVAAVIALTLnsaAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQ 140
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 107-253 1.09e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  107 LPLVVPIIITAVGIFFVYAKVGLVATMPGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQI 186
Cdd:pfam00528  26 LLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNA 105

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504305612  187 KSSVVAGGIFAFISAMDETIVALFIsgGQYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLA 253
Cdd:pfam00528 106 LPPILTGLALAFGGALGGAVLLEFL--GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 52-256 5.66e-05

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 44.14  E-value: 5.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   52 YQQYFANPAWMQATRVTLTVAFFTVLIATpcgvAAAYAISQSKLRIMRIMHMALLLPLVVPIIitavGIFFVYAKVGLVA 131
Cdd:TIGR01253  44 YLQHLILFSFGQAFLSALLSIFFAIFLAR----ALFRKPFLGKKALLKLCALTFILPALVAIF----GIIGIYGRQGWLA 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  132 TM---------------PGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIF 196
Cdd:TIGR01253 116 TLanlfglewqfhiyglQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAAL 195

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504305612  197 AFISAMDETIVALFISGG-QYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLASTR 256
Cdd:TIGR01253 196 IFMLCFASFATVLSLGGGpQATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQR 256
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 17-213 1.40e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 42.39  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  17 LVLVYLiLPVLIIAPISFSS-ARflTFPPPSFSLRW-------------YQQYFANPAWMQATRVTLTVAFFTVLIATPC 82
Cdd:PRK10683  40 LILLFL-LPFLIVFKISLAEmAR--AIPPYTDLMEWadgqlsitlnlgnFLQLTDDPLYFDAYLQSLQVAAISTLCCLLI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  83 GVAAAYAISQSKLRIMRIMHMALLLPLVVPIIITavgiffVYAKVGLVATmpGLVLANVMLG------------------ 144
Cdd:PRK10683 117 GYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIR------VYAWMGILKN--NGVLNNFLLWlgvidqpltilhtnlavy 188

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504305612 145 -------LPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAFISAMDETIVALFISG 213
Cdd:PRK10683 189 igivyayLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 63-256 2.45e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.13  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  63 QATRVTLTVAFFTVLIATPCGVAAAYAISQ----SKLRIMRIMHMalllPLVVPIIITAVGIFFVYAKVGLVATM----- 133
Cdd:PRK09433  44 HVLRFSFWQAFLSALLSVLPAIPLARALYRrrfpGRGLLLRLCAM----TLVLPVLVAVFGLLSVYGRSGWLAQLlqalg 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612 134 ----------PGLVLANVMLGLPYVVISVLAGLQSFDPAQEMVARSLGMNRLRSFFAVTLPQIKSSV--VAGGIFAFISA 201
Cdd:PRK09433 120 lewpfsiyglQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLppVAALIFMLCFT 199

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 504305612 202 MDETIVALfisGG--QYQPLTKRMFTALRDEIDPTIAAISTLMTAASFMLVLLASTR 256
Cdd:PRK09433 200 SFATVLTL---GGgpKATTIELAIYQALSFDFDLARAALLALLQMVLCLGLVLLSQR 253
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 6-186 3.31e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 41.78  E-value: 3.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   6 PARIVLYVISALVLVYLILPVLI--IAPISFSSARFLTFPPPSFSLRWYQQYFANPAWMQATRVTLTVAFFTVLIAtpCG 83
Cdd:COG4135    1 ARSLLLRLAPALTLLLLLGPVLAglAGTLLPAFGYLPALGGTGFSLAPWRALFAWPGLGRSILLSLFTGLAATLLA--LL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612  84 VAAAYAISQSKLRIMRIMHMALLLPLVVPIIITAVGIFFVYAKVGLVA-----------TMPGLVLAN------VMLGL- 145
Cdd:COG4135   79 LALLILAAFYGTRLFRRLERLLSPLLAVPHAAAAIGLAFLIAPSGWLArllspwltgwdRPPDLLLVQdpyglsLILGLv 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 504305612 146 ----PYVVISVLAGLQSFDPAQ-EMVARSLGMNRLRSFFAVTLPQI 186
Cdd:COG4135  159 lkevPFLLLMSLAALPQLNVRRsLAVARSLGYGRATAWLKVVLPQL 204
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 5-210 5.24e-03

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 37.98  E-value: 5.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612    5 SPARIVLYVISALVLVYLILPVLIIAPISFSSARFLTFpppsfslrwyqqyFANPAWMQATRVTLTVAFFTVLIATPCGV 84
Cdd:TIGR01253 278 LASKICDILLILLALFFLFPPLLAIIIDALNSRNLLEV-------------LANPQLWQALGTSLRIALAAALLALTLAI 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504305612   85 AAAYAISQ----SKLRIMRIMHMALLLPLVVPIIITAVGIFFVYA-KVGLVATMPGLVL-ANVMLGLPYVVISVLAGLQS 158
Cdd:TIGR01253 345 ALLLLSRElealHKMKAGQFIEMAGMLILAIPGIVLAMGFFLLLNdRDFLNIDADGIVIfCNALMAIPFALKILEAPFHD 424

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 504305612  159 FDPAQEMVARSLGMNRLRSFFAVTLPQIKSSVVAGGIFAF-ISAMDETIVALF 210
Cdd:TIGR01253 425 IMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACaLSIGDFGAIALF 477
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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