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Conserved domains on  [gi|504289691|ref|WP_014476793|]
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MULTISPECIES: YlqD family protein [Bacillus]

Protein Classification

YlqD family protein( domain architecture ID 10567413)

YlqD family protein may act as a molecular chaperone, similar to Synechococcus Sp. unknown protein that forms a tetrameric structure of prefoldin-like architecture with a beta-barrel core and helical coiled coil tentacles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqD pfam11068
YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and ...
 1-126 1.08e-37

YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and found to form a tetrameric structure of prefoldin-like architecture with the beta-barrel core and helical coiled coil tentacles. This suggests that this family may act as molecular chaperones.


:

Pssm-ID: 431635 [Multi-domain]  Cd Length: 131  Bit Score: 124.18  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504289691    1 MQIIHRVAVMQVLTERSKEKLLASFAEKKQMLERECSQLYFQLRKHEKE------QQNPDMIEQFKKAIEKRKDDIKIID 74
Cdd:pfam11068   1 LLIKRPVTVKAIVTERWKEELQQQLQAQIQQLDRELQQLEFQGKRAIAEikkqsiQQIENLQQQFEQEKSERLEQKNQLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 504289691   75 FQIAQVHTLPLGSELKEKEVDALLTIEAGDDWHEKTAAnTIVIKDGKVIEIR 126
Cdd:pfam11068  81 QQLEQVQKLELGSEVKQGQVESFVEVKVGDNWIEKMGV-EIVIKDGVVVEIR 131
 
Name Accession Description Interval E-value
YlqD pfam11068
YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and ...
 1-126 1.08e-37

YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and found to form a tetrameric structure of prefoldin-like architecture with the beta-barrel core and helical coiled coil tentacles. This suggests that this family may act as molecular chaperones.


Pssm-ID: 431635 [Multi-domain]  Cd Length: 131  Bit Score: 124.18  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504289691    1 MQIIHRVAVMQVLTERSKEKLLASFAEKKQMLERECSQLYFQLRKHEKE------QQNPDMIEQFKKAIEKRKDDIKIID 74
Cdd:pfam11068   1 LLIKRPVTVKAIVTERWKEELQQQLQAQIQQLDRELQQLEFQGKRAIAEikkqsiQQIENLQQQFEQEKSERLEQKNQLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 504289691   75 FQIAQVHTLPLGSELKEKEVDALLTIEAGDDWHEKTAAnTIVIKDGKVIEIR 126
Cdd:pfam11068  81 QQLEQVQKLELGSEVKQGQVESFVEVKVGDNWIEKMGV-EIVIKDGVVVEIR 131
 
Name Accession Description Interval E-value
YlqD pfam11068
YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and ...
 1-126 1.08e-37

YlqD protein; The structure of a representative of this family has been solved (pdb:4dci) and found to form a tetrameric structure of prefoldin-like architecture with the beta-barrel core and helical coiled coil tentacles. This suggests that this family may act as molecular chaperones.


Pssm-ID: 431635 [Multi-domain]  Cd Length: 131  Bit Score: 124.18  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504289691    1 MQIIHRVAVMQVLTERSKEKLLASFAEKKQMLERECSQLYFQLRKHEKE------QQNPDMIEQFKKAIEKRKDDIKIID 74
Cdd:pfam11068   1 LLIKRPVTVKAIVTERWKEELQQQLQAQIQQLDRELQQLEFQGKRAIAEikkqsiQQIENLQQQFEQEKSERLEQKNQLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 504289691   75 FQIAQVHTLPLGSELKEKEVDALLTIEAGDDWHEKTAAnTIVIKDGKVIEIR 126
Cdd:pfam11068  81 QQLEQVQKLELGSEVKQGQVESFVEVKVGDNWIEKMGV-EIVIKDGVVVEIR 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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