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Conserved domains on  [gi|503994901|ref|WP_014228895|]
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MULTISPECIES: antiterminator Q family protein [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 1-113 3.49e-57

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


:

Pssm-ID: 428991  Cd Length: 118  Bit Score: 172.43  E-value: 3.49e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503994901    1 MRDMYEILDRWGAWAASDNSGVDWQPIAAGFKGLLPHGKKTRQQCDDDEGIMIDGCVARLRKYKPEEYELIIAHFIIGIS 80
Cdd:pfam06530   1 MRDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMS 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 503994901   81 LRSIAKKRKCSDGTIRKELHKAMGFIDGIISMI 113
Cdd:pfam06530  81 KRAIARKLKCSEGEIRKKLQTAEGFIEGCLAAL 113
 
Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 1-113 3.49e-57

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


Pssm-ID: 428991  Cd Length: 118  Bit Score: 172.43  E-value: 3.49e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503994901    1 MRDMYEILDRWGAWAASDNSGVDWQPIAAGFKGLLPHGKKTRQQCDDDEGIMIDGCVARLRKYKPEEYELIIAHFIIGIS 80
Cdd:pfam06530   1 MRDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMS 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 503994901   81 LRSIAKKRKCSDGTIRKELHKAMGFIDGIISMI 113
Cdd:pfam06530  81 KRAIARKLKCSEGEIRKKLQTAEGFIEGCLAAL 113
sigma70-ECF TIGR02937
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ...
 60-103 5.20e-04

RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.


Pssm-ID: 274357 [Multi-domain]  Cd Length: 158  Bit Score: 37.33  E-value: 5.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 503994901   60 LRKYKPEEYELIIAHFIIGISLRSIAKKRKCSDGTIRKELHKAM 103
Cdd:TIGR02937 108 LEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151
 
Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 1-113 3.49e-57

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


Pssm-ID: 428991  Cd Length: 118  Bit Score: 172.43  E-value: 3.49e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503994901    1 MRDMYEILDRWGAWAASDNSGVDWQPIAAGFKGLLPHGKKTRQQCDDDEGIMIDGCVARLRKYKPEEYELIIAHFIIGIS 80
Cdd:pfam06530   1 MRDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMS 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 503994901   81 LRSIAKKRKCSDGTIRKELHKAMGFIDGIISMI 113
Cdd:pfam06530  81 KRAIARKLKCSEGEIRKKLQTAEGFIEGCLAAL 113
sigma70-ECF TIGR02937
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ...
 60-103 5.20e-04

RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.


Pssm-ID: 274357 [Multi-domain]  Cd Length: 158  Bit Score: 37.33  E-value: 5.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 503994901   60 LRKYKPEEYELIIAHFIIGISLRSIAKKRKCSDGTIRKELHKAM 103
Cdd:TIGR02937 108 LEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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