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Conserved domains on  [gi|503770912|ref|WP_014004988|]
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phage holin family protein [Collimonas fungivorans]

Protein Classification

phage holin family protein( domain architecture ID 10527195)

uncharacterized phage holin family protein may be a three-transmembrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_holin_3_7 pfam05449
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 8-86 2.15e-22

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


:

Pssm-ID: 428477  Cd Length: 80  Bit Score: 82.30  E-value: 2.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503770912   8 IAVLSYAMTCMQLLCYRRGYANYRIHISLVAWLLIVFTGTCALEILLGTAR-TSFGQAGIAFTLCVLVYRARGNVANIIR 86
Cdd:pfam05449  1 INAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Name Accession Description Interval E-value
Phage_holin_3_7 pfam05449
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 8-86 2.15e-22

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


Pssm-ID: 428477  Cd Length: 80  Bit Score: 82.30  E-value: 2.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503770912   8 IAVLSYAMTCMQLLCYRRGYANYRIHISLVAWLLIVFTGTCALEILLGTAR-TSFGQAGIAFTLCVLVYRARGNVANIIR 86
Cdd:pfam05449  1 INAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Name Accession Description Interval E-value
Phage_holin_3_7 pfam05449
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 8-86 2.15e-22

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


Pssm-ID: 428477  Cd Length: 80  Bit Score: 82.30  E-value: 2.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503770912   8 IAVLSYAMTCMQLLCYRRGYANYRIHISLVAWLLIVFTGTCALEILLGTAR-TSFGQAGIAFTLCVLVYRARGNVANIIR 86
Cdd:pfam05449  1 INAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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