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Conserved domains on  [gi|503312906|ref|WP_013547567|]
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HU family DNA-binding protein [Bacteroides helcogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HU-HIG pfam18291
HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains ...
 1-128 1.91e-47

HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.


:

Pssm-ID: 436389  Cd Length: 125  Bit Score: 152.35  E-value: 1.91e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503312906    1 MSAYYDLYETPSPDGKEDKKSLHARICPKRTYTRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGF 80
Cdd:pfam18291   1 MAIKYDLYKRPNPKGEGEPQKLYARVVPKGTVTLKELEDRISKATTLTRADVKGVLEALIDELVDYLADGYRVHLGELGY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 503312906   81 FSTSLKClrETDDEKKKIRSESVRFQNVHLRISSTFRRNIKSaMTLER 128
Cdd:pfam18291  81 FSLSLSS--KGVDDKKEVRANSIKFRNINFRPGKKLKRELKG-LSFER 125
 
Name Accession Description Interval E-value
HU-HIG pfam18291
HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains ...
 1-128 1.91e-47

HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.


Pssm-ID: 436389  Cd Length: 125  Bit Score: 152.35  E-value: 1.91e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503312906    1 MSAYYDLYETPSPDGKEDKKSLHARICPKRTYTRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGF 80
Cdd:pfam18291   1 MAIKYDLYKRPNPKGEGEPQKLYARVVPKGTVTLKELEDRISKATTLTRADVKGVLEALIDELVDYLADGYRVHLGELGY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 503312906   81 FSTSLKClrETDDEKKKIRSESVRFQNVHLRISSTFRRNIKSaMTLER 128
Cdd:pfam18291  81 FSLSLSS--KGVDDKKEVRANSIKFRNINFRPGKKLKRELKG-LSFER 125
HimA COG0776
Bacterial nucleoid DNA-binding protein IHF-alpha [Replication, recombination and repair];
33-90 4.22e-06

Bacterial nucleoid DNA-binding protein IHF-alpha [Replication, recombination and repair];


Pssm-ID: 440539  Cd Length: 92  Bit Score: 43.59  E-value: 4.22e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 503312906  33 TRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGFFSTSLKCLRE 90
Cdd:COG0776    2 TKSELIEAIAEKTGLSKKDAEAAVDAFLDEITEALAKGERVELRGFGTFSVRKRAART 59
 
Name Accession Description Interval E-value
HU-HIG pfam18291
HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains ...
 1-128 1.91e-47

HU domain fused to wHTH, Ig, or Glycine-rich motif; Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.


Pssm-ID: 436389  Cd Length: 125  Bit Score: 152.35  E-value: 1.91e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503312906    1 MSAYYDLYETPSPDGKEDKKSLHARICPKRTYTRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGF 80
Cdd:pfam18291   1 MAIKYDLYKRPNPKGEGEPQKLYARVVPKGTVTLKELEDRISKATTLTRADVKGVLEALIDELVDYLADGYRVHLGELGY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 503312906   81 FSTSLKClrETDDEKKKIRSESVRFQNVHLRISSTFRRNIKSaMTLER 128
Cdd:pfam18291  81 FSLSLSS--KGVDDKKEVRANSIKFRNINFRPGKKLKRELKG-LSFER 125
HimA COG0776
Bacterial nucleoid DNA-binding protein IHF-alpha [Replication, recombination and repair];
33-90 4.22e-06

Bacterial nucleoid DNA-binding protein IHF-alpha [Replication, recombination and repair];


Pssm-ID: 440539  Cd Length: 92  Bit Score: 43.59  E-value: 4.22e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 503312906  33 TRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGFFSTSLKCLRE 90
Cdd:COG0776    2 TKSELIEAIAEKTGLSKKDAEAAVDAFLDEITEALAKGERVELRGFGTFSVRKRAART 59
Bac_DNA_binding pfam00216
Bacterial DNA-binding protein;
33-86 3.46e-03

Bacterial DNA-binding protein;


Pssm-ID: 425532  Cd Length: 88  Bit Score: 35.57  E-value: 3.46e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 503312906   33 TRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGFFSTSLK 86
Cdd:pfam00216   1 TKKELIKAIAEKTGLSKKEAERVVDAFLEVIKEALKKGEKVELRGFGTFEVRER 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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