|
Name |
Accession |
Description |
Interval |
E-value |
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
11-298 |
8.72e-130 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 369.75 E-value: 8.72e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRG 90
Cdd:COG0411 2 DPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRI----------------LFDG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 KQwtkangagavflLERMPGFEIARLaRVARTFQNIRLFAGMTLLENLLVAQHtvlNAASGYTIGGLLGLASFKRAEAAA 170
Cdd:COG0411 66 RD------------ITGLPPHRIARL-GIARTFQNPRLFPELTVLENVLVAAH---ARLGRGLLAALLRLPRARREEREA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLI 250
Cdd:COG0411 130 RERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLI 209
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLGVPDDE 298
Cdd:COG0411 210 EHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRADPRVIEAYLGEEAAA 257
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
13-293 |
1.35e-120 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 346.21 E-value: 1.35e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI----------------LLRGQH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEIARLArVARTFQNIRLFAGMTLLENLLVAQHTVLNAAsgyTIGGLLGLASFKRAEAAAID 172
Cdd:PRK11300 69 ------------IEGLPGHQIARMG-VVRTFQHVRLFREMTVIENLLVAQHQQLKTG---LFSGLLKTPAFRRAESEALD 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:PRK11300 133 RAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:PRK11300 213 DMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIKAYLG 253
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
14-287 |
5.81e-106 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 308.60 E-value: 5.81e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAlahgseaafealpaatFRGKqw 93
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL----------------FDGE-- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfLLERMPGFEIARLaRVARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytiGGLLGLASFKRAEAAAIDK 173
Cdd:cd03219 63 ----------DITGLPPHEIARL-GIGRTFQIPRLFPELTVLENVMVAAQART--------GSGLLLARARREEREARER 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLIEHD 253
Cdd:cd03219 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG-ITVLLVEHD 202
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRV 287
Cdd:cd03219 203 MDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-293 |
5.13e-69 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 214.98 E-value: 5.13e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 7 DATRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaa 86
Cdd:COG4674 4 DTMHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSV---------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 87 TFRGKQwtkangagavflLERMPGFEIARLArVARTFQNIRLFAGMTLLENLLVAqhtvlnAASGYTIGGLLglasFKRA 166
Cdd:COG4674 68 LFGGTD------------LTGLDEHEIARLG-IGRKFQKPTVFEELTVFENLELA------LKGDRGVFASL----FARL 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalS 246
Cdd:COG4674 125 TAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKH--S 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:COG4674 203 VVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQADPRVIEVYLG 249
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
14-283 |
4.39e-51 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 168.32 E-value: 4.39e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkqw 93
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVL-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpGFEIARLARVART-----FQNIRLFAGMTLLENLLVaqhtvlnaasgytIGGLLGLasfkrAEA 168
Cdd:COG1131 61 ----------------GEDVARDPAEVRRrigyvPQEPALYPDLTVRENLRF-------------FARLYGL-----PRK 106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSIL 248
Cdd:COG1131 107 EARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGK-TVL 185
|
250 260 270
....*....|....*....|....*....|....*
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:COG1131 186 LSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
9-287 |
2.65e-48 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 161.30 E-value: 2.65e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEI----------------LV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGAGAVFLLERMpGFeiarlarvarTFQNIRLFAGMTLLENllVA----QHTVLNAASgytiggLLGLASFK 164
Cdd:COG1127 65 DGQDITGLSEKELYELRRRI-GM----------LFQGGALFDSLTVFEN--VAfplrEHTDLSEAE------IRELVLEK 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 165 raeaaaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHA 244
Cdd:COG1127 126 -------------LELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELG 192
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 503183841 245 LSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA--DPRV 287
Cdd:COG1127 193 LTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLAsdDPWV 237
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
14-284 |
8.05e-48 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 159.52 E-value: 8.05e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQw 93
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI----------------RFDGRD- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavflLERMPGFEIARLArVARTFQNIRLFAGMTLLENLLVAQHTVLNAASGYTIGGLLGLasFKRaeaaaidk 173
Cdd:cd03224 64 -----------ITGLPPHERARAG-IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL--FPR-------- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywlreigLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHD 253
Cdd:cd03224 122 ---------LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQN 191
|
250 260 270
....*....|....*....|....*....|.
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:cd03224 192 ARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
14-287 |
2.73e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 158.82 E-value: 2.73e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV----------------LIDGEDI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAGAvfllermpgFEIARlaRVARTFQNIRLFAGMTLLENllVA----QHTVLNAAsgyTIGGLlglasfkraeaa 169
Cdd:cd03261 65 SGLSEAEL---------YRLRR--RMGMLFQSGALFDSLTVFEN--VAfplrEHTRLSEE---EIREI------------ 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:cd03261 117 ----VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA--DPRV 287
Cdd:cd03261 193 VTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAsdDPLV 232
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
11-294 |
4.25e-47 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 158.22 E-value: 4.25e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRG 90
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSI----------------RFDG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 KQwtkangagavflLERMPGFEIARL--ARVArtfQNIRLFAGMTLLENLLVAQHTVLNAASGY-TIGGLLGLasFKRae 167
Cdd:COG0410 65 ED------------ITGLPPHRIARLgiGYVP---EGRRIFPSLTVEENLLLGAYARRDRAEVRaDLERVYEL--FPR-- 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 aaaidkaaywLREiglvdRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSI 247
Cdd:COG0410 126 ----------LKE-----RRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREG-VTI 189
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLGV 294
Cdd:COG0410 190 LLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLGV 236
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
16-282 |
7.30e-42 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 144.05 E-value: 7.30e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkqwtk 95
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA---------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 96 angagavfllermpGFEIARLARVAR-----TFQNIRLFAGMTLLENLlvaqhtvlnaasgYTIGGLLGLASFKRAEAAA 170
Cdd:cd03265 61 --------------GHDVVREPREVRrrigiVFQDLSVDDELTGWENL-------------YIHARLYGVPGAERRERID 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLI 250
Cdd:cd03265 114 EL-----LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIR 282
Cdd:cd03265 189 THYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
14-282 |
1.02e-40 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 141.10 E-value: 1.02e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGL--VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgk 91
Cdd:cd03263 1 LQIRNLTKTYKKGtkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYIN------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpGFEIARLARVARtfQNIrlfaGM-----TLLENLLVAQHTVLnaasgytIGGLLGLASFKRA 166
Cdd:cd03263 63 ------------------GYSIRTDRKAAR--QSL----GYcpqfdALFDELTVREHLRF-------YARLKGLPKSEIK 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalS 246
Cdd:cd03263 112 EEVELL-----LRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--S 184
|
250 260 270
....*....|....*....|....*....|....*.
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIR 282
Cdd:cd03263 185 IILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
13-283 |
4.59e-40 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 139.99 E-value: 4.59e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgkq 92
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILI-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkaNGAGAVFLlermpgfEIARLARVARTFQNIRLFAGMTLLENLLVAqhtvlnaasgYTIGGLLGLASFKRAEaaaid 172
Cdd:COG4555 61 ----DGEDVRKE-------PREARRQIGVLPDERGLYDRLTVRENIRYF----------AELYGLFDEELKKRIE----- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEH 252
Cdd:COG4555 115 ---ELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSH 190
|
250 260 270
....*....|....*....|....*....|.
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:COG4555 191 IMQEVEALCDRVVILHKGKVVAQGSLDELRE 221
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
14-290 |
5.11e-39 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 137.08 E-value: 5.11e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEV----------------LVDGKD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKANGAgavfllermpgfEIARlaRVARTFQNIR--LFAgMTLLENllVAqhtvlnaasgytigglLGLASFKRAEAAA 170
Cdd:COG1122 65 ITKKNLR------------ELRR--KVGLVFQNPDdqLFA-PTVEED--VA----------------FGPENLGLPREEI 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLI 250
Cdd:COG1122 112 RERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEG-KTVIIV 190
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAA 290
Cdd:COG1122 191 THDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELLEE 230
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
13-290 |
7.47e-39 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 142.86 E-value: 7.47e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAF----EALpaatf 88
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILI-DGKPVRIrsprDAI----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 rgkqwtkANGAGAVFllermpgfeiarlarvartfQNIRLFAGMTLLENLLVAQHTvlnaasgyTIGGLLGLASFKRAea 168
Cdd:COG3845 79 -------ALGIGMVH--------------------QHFMLVPNLTVAENIVLGLEP--------TKGGRLDRKAARAR-- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaaywLREI----GL-VDrADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEh 243
Cdd:COG3845 122 ---------IRELseryGLdVD-PDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAE- 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 244 ALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEirADPRVIAA 290
Cdd:COG3845 191 GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAE--TSEEELAE 235
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
14-271 |
3.89e-37 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.21 E-value: 3.89e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatfrgkqw 93
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagAVFllermpGFEIARLARVART-----FQNIRLFAGMTLLENLlvaqhtvlnaasgytiggllglasfkraea 168
Cdd:cd03230 58 -------KVL------GKDIKKEPEEVKRrigylPEEPSLYENLTVRENL------------------------------ 94
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaaywlreiglvdraddpagDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSIL 248
Cdd:cd03230 95 ------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGK-TIL 149
|
250 260
....*....|....*....|...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGK 271
Cdd:cd03230 150 LSSHILEEAERLCDRVAILNNGR 172
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
14-293 |
4.96e-37 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 131.90 E-value: 4.96e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSeaafealpaatfrgkqw 93
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavflLERMPGFEIARLArVARTFQNIRLFAGMTLLENLLVAqhtvlnaasgytiggllgLASFKRAEAAAIDK 173
Cdd:cd03218 64 -----------ITKLPMHKRARLG-IGYLPQEASIFRKLTVEENILAV------------------LEIRGLSKKEREEK 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHD 253
Cdd:cd03218 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHN 192
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:cd03218 193 VRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
9-291 |
1.53e-36 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 130.98 E-value: 1.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTV----------------RL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGagavfllermpgfEIARL---ARVARTFQnirlfagMTLLEnlLVAqhtvlnaaSGYTigGLLGLasFKR 165
Cdd:COG1121 66 FGKPPRRARR-------------RIGYVpqrAEVDWDFP-------ITVRD--VVL--------MGRY--GRRGL--FRR 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaL 245
Cdd:COG1121 112 PSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREG-K 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 503183841 246 SILLIEHDMGVVMQISDRIAVLDyGKKIAEGTPDEIRADPRVIAAY 291
Cdd:COG1121 191 TILVVTHDLGAVREYFDRVLLLN-RGLVAHGPPEEVLTPENLSRAY 235
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-286 |
1.75e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 136.57 E-value: 1.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 5 ASDATRDDLLRVENLTMRF-----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaa 79
Cdd:COG1123 252 PAAAAAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSI--------- 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 80 fealpaaTFRGKQWTKANGAgavfllermpgfEIARLAR-VARTFQNIR--LFAGMTLLENLlvaqhtvlnaASGYTIGG 156
Cdd:COG1123 323 -------LFDGKDLTKLSRR------------SLRELRRrVQMVFQDPYssLNPRMTVGDII----------AEPLRLHG 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 157 LLGLASFKRAEAAAidkaaywLREIGLV-DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNAL 235
Cdd:COG1123 374 LLSRAERRERVAEL-------LERVGLPpDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNL 446
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 503183841 236 LLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1123 447 LRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
14-276 |
5.00e-36 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 128.49 E-value: 5.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI----------------TFDGKSY 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGA----GAvfLLERmPGFEIARLARvartfQNIRLFAGMTLLENLLVAQhtvlnaasgytiggllglasfkraeaa 169
Cdd:cd03268 65 QKNIEAlrriGA--LIEA-PGFYPNLTAR-----ENLRLLARLLGIRKKRIDE--------------------------- 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILL 249
Cdd:cd03268 110 -------VLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLI 181
|
250 260
....*....|....*....|....*..
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03268 182 SSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-307 |
5.59e-36 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 131.00 E-value: 5.59e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEV----------------LWDGEPL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAGAVFLLE-RmpgfeiarlarvartfqniRLFAGMTLLENLLvaqhtvlnaasgYtIGGLLGLASfkraeAAAID 172
Cdd:COG4152 66 DPEDRRRIGYLPEeR-------------------GLYPKMKVGEQLV------------Y-LARLKGLSK-----AEAKR 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPresheLNALLLK--IREEHA--LSIL 248
Cdd:COG4152 109 RADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLDP-----VNVELLKdvIRELAAkgTTVI 183
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIR-------------ADPRVIAAYLGVPDDEVEGVGAEVE 307
Cdd:COG4152 184 FSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRrqfgrntlrleadGDAGWLRALPGVTVVEEDGDGAELK 255
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
13-286 |
7.98e-36 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 128.85 E-value: 7.98e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatf 88
Cdd:cd03258 1 MIELKNVSKVFGDtggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 rGKQWTKANGAGAVfllermpgfeiARLARVARTFQNIRLFAGMTLLENLLVAqhtvlnaasgytigglLGLASFKRAEA 168
Cdd:cd03258 66 -GTDLTLLSGKELR-----------KARRRIGMIFQHFNLLSSRTVFENVALP----------------LEIAGVPKAEI 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDP-VLLClDEPAAGLNPRESHELNALLLKIREEHALSI 247
Cdd:cd03258 118 EERVLEL--LELVGLEDKADAYPAQLSGGQKQRVGIARALANNPkVLLC-DEATSALDPETTQSILALLRDINRELGLTI 194
|
250 260 270
....*....|....*....|....*....|....*....
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:cd03258 195 VLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
14-271 |
1.11e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 124.22 E-value: 1.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI----------------LIDGEDL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANgaGAVFLLERMPGFeiarlarvarTFQNIRLFAGMTLLENLLVaqhtvlnaasgytigGLLGlasfkraeaaaidk 173
Cdd:cd03229 65 TDLE--DELPPLRRRIGM----------VFQDFALFPHLTVLENIAL---------------GLSG-------------- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywlreiglvdraddpagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:cd03229 104 -----------------------GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
|
250
....*....|....*...
gi 503183841 254 MGVVMQISDRIAVLDYGK 271
Cdd:cd03229 161 LDEAARLADRVVVLRDGK 178
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
13-276 |
4.58e-34 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 124.16 E-value: 4.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI----------------IF 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKangagavfLLERMpgFEIARlARVARTFQNirlfagmtllenllvaQHTVLNAAsgYTIGGLL--GLASFKRA 166
Cdd:cd03257 65 DGKDLLK--------LSRRL--RKIRR-KEIQMVFQD----------------PMSSLNPR--MTIGEQIaePLRIHGKL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDKAAYWLREIGLVDRADDpAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:cd03257 116 SKKEARKEAVLLLLVGVGLPEEV-LNRYPHelsGGQRqRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 243 HALSILLIEHDMGVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03257 195 LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
14-284 |
1.02e-33 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 123.45 E-value: 1.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLV-AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV----------------LIDGTD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKANGAGavfllERMpgfeiARlARVARTFQNIRLFAGMTLLENllvaqhtVLNAASGY--TIGGLLGLasFKRAEAAA 170
Cdd:cd03256 65 INKLKGKA-----LRQ-----LR-RQIGMIFQQFNLIERLSVLEN-------VLSGRLGRrsTWRSLFGL--FPKEEKQR 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDkaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLI 250
Cdd:cd03256 125 AL---AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:cd03256 202 LHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
14-293 |
2.67e-33 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 122.45 E-value: 2.67e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:COG1137 4 LEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRI----------------FLDGEDI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TkangagavflleRMPGFEIAR-----LArvartfQNIRLFAGMTLLENLL-VAQHTVLNAAsgytiggllglasfKRAE 167
Cdd:COG1137 68 T------------HLPMHKRARlgigyLP------QEASIFRKLTVEDNILaVLELRKLSKK--------------EREE 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 AAAIDkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIReEHALSI 247
Cdd:COG1137 116 RLEEL-----LEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLK-ERGIGV 189
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:COG1137 190 LITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLG 235
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
13-286 |
3.32e-33 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 122.02 E-value: 3.32e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI----------------TVDGED 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTkangagavfllerMPGFEIARL-ARVARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytiggllglasfKRAEAAAI 171
Cdd:COG1126 65 LT-------------DSKKDINKLrRKVGMVFQQFNLFPHLTVLENVTLAPIKVK-----------------KMSKAEAE 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 DKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLIE 251
Cdd:COG1126 115 ERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEG-MTMVVVT 193
|
250 260 270
....*....|....*....|....*....|....*
gi 503183841 252 HDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1126 194 HEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQ 228
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
13-284 |
4.07e-33 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 122.09 E-value: 4.07e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGK 91
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEI----------------LVDGQ 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QWTKANGAgavfllermpgfEIARL-ARVARTFQNIRLFAGMTLLENllvaqhtVLNAASGY--TIGGLLGLasFKRAEA 168
Cdd:COG3638 66 DVTALRGR------------ALRRLrRRIGMIFQQFNLVPRLSVLTN-------VLAGRLGRtsTWRSLLGL--FPPEDR 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:COG3638 125 ERALEA---LERVGLADKAYQRADQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVV 201
|
250 260 270
....*....|....*....|....*....|....*.
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:COG3638 202 VNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDA 237
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
11-293 |
4.11e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 127.06 E-value: 4.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAFEAlPAAtfrg 90
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLD-GEPVRFRS-PRD---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 kqwtkangagavfllermpgfeiARLARVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgYTIGGLLGLASFKRAEAAa 170
Cdd:COG1129 76 -----------------------AQAAGIAIIHQELNLVPNLSVAENIFLGRE--------PRRGGLIDWRAMRRRARE- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 idkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLI 250
Cdd:COG1129 124 ------LLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYI 196
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADpRVIAAYLG 293
Cdd:COG1129 197 SHRLDEVFEIADRVTVLRDGRLVGTGPVAELTED-ELVRLMVG 238
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
11-290 |
9.05e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 126.17 E-value: 9.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRF--GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGfYKPTEGRIAlahGSeaafealpaATF 88
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMG-LLPHGGRIS---GE---------VLL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGAgavfllermpgfeiARLARVARTFQNirlfaGMTLLENLLVAQHtvlnAASGYTIGGLLGLASFKRAEA 168
Cdd:COG1123 69 DGRDLLELSEA--------------LRGRRIGMVFQD-----PMTQLNPVTVGDQ----IAEALENLGLSRAEARARVLE 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:COG1123 126 --------LLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVL 197
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAA 290
Cdd:COG1123 198 LITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQALAA 239
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
14-293 |
2.27e-32 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 120.07 E-value: 2.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKI----------------LIDGQDI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKangagavfllerMPGFEIARLArVARTFQNIRLFAGMTLLENLLVAQHTVLNAASGYTIGGLLGLasfkraeaaaidk 173
Cdd:TIGR04406 66 TH------------LPMHERARLG-IGYLPQEASIFRKLTVEENIMAVLEIRKDLDRAEREERLEAL------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHD 253
Cdd:TIGR04406 120 ----LEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKER-GIGVLITDHN 194
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:TIGR04406 195 VRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLG 234
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
14-271 |
5.09e-32 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 118.40 E-value: 5.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI----------------IIDGLKL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKangagavfllermPGFEIARL-ARVARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytiggllglasfKRAEAAAID 172
Cdd:cd03262 65 TD-------------DKKNINELrQKVGMVFQQFNLFPHLTVLENITLAPIKVK-----------------GMSKAEAEE 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLIEH 252
Cdd:cd03262 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTH 193
|
250
....*....|....*....
gi 503183841 253 DMGVVMQISDRIAVLDYGK 271
Cdd:cd03262 194 EMGFAREVADRVIFMDDGR 212
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
14-271 |
5.88e-32 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 118.01 E-value: 5.88e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI----------------LIDGRDV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKangagavfllerMPgfeiARLARVARTFQNIRLFAGMTLLENLlvaqhtvlnaASGYTIGGLLGLASFKRAEAAaidk 173
Cdd:cd03259 65 TG------------VP----PERRNIGMVFQDYALFPHLTVAENI----------AFGLKLRGVPKAEIRARVREL---- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:cd03259 115 ----LELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
|
250
....*....|....*...
gi 503183841 254 MGVVMQISDRIAVLDYGK 271
Cdd:cd03259 191 QEEALALADRIAVMNEGR 208
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
13-295 |
1.51e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 118.22 E-value: 1.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQ 92
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLD----------------GRD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEIARlaRVArtfqnirlfagmtllenlLVAQHTVlnAASGYTIGGL--LG----LASFKRA 166
Cdd:COG1120 65 ------------LASLSRRELAR--RIA------------------YVPQEPP--APFGLTVRELvaLGryphLGLFGRP 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALS 246
Cdd:COG1120 111 SAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRT 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIrADPRVIAAYLGVP 295
Cdd:COG1120 191 VVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV-LTPELLEEVYGVE 238
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
14-294 |
5.55e-31 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 116.09 E-value: 5.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQw 93
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI----------------RLDGED- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavflLERMPGFEIARlARVARTFQNIRLFAGMTLLENLLVaqhtvlnaasgytiggllGLASFKRAEAAAIDK 173
Cdd:TIGR03410 64 -----------ITKLPPHERAR-AGIAYVPQGREIFPRLTVEENLLT------------------GLAALPRRSRKIPDE 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AaYWLREIgLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:TIGR03410 114 I-YELFPV-LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIraDPRVIAAYLGV 294
Cdd:TIGR03410 192 LDFARELADRYYVMERGRVVASGAGDEL--DEDKVRRYLAV 230
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
8-287 |
1.23e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 115.96 E-value: 1.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 8 ATRDDLLRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafeal 83
Cdd:COG1116 2 SAAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEV------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 84 paaTFRGKQWTKANgagavfllermpgfeiarlARVARTFQNIRLFAGMTLLENllVAqhtvlnaasgytigglLGLASF 163
Cdd:COG1116 69 ---LVDGKPVTGPG-------------------PDRGVVFQEPALLPWLTVLDN--VA----------------LGLELR 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 KRAEAAAIDKAAYWLREIGLVDRADDpagdLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKI 239
Cdd:COG1116 109 GVPKAERRERARELLELVGLAGFEDA----YPHqlsgGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRL 184
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 503183841 240 REEHALSILLIEHDMG--VVMqiSDRIAVLDygkkiaeGTPDEIRADPRV 287
Cdd:COG1116 185 WQETGKTVLFVTHDVDeaVFL--ADRVVVLS-------ARPGRIVEEIDV 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
14-267 |
1.82e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 114.49 E-value: 1.82e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFR 89
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV----------------LVD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANgagavfllermpgfeiarlARVARTFQNIRLFAGMTLLENllVAqhtvlnaasgytigglLGLASFKRAEAA 169
Cdd:cd03293 65 GEPVTGPG-------------------PDRGYVFQQDALLPWLTVLDN--VA----------------LGLELQGVPKAE 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:cd03293 108 ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187
|
250
....*....|....*...
gi 503183841 250 IEHDMGVVMQISDRIAVL 267
Cdd:cd03293 188 VTHDIDEAVFLADRVVVL 205
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
14-275 |
1.98e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 112.52 E-value: 1.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFEAlPAAtfrgkqw 93
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSFAS-PRD------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpgfeiARLARVARTFQnirlfagmtllenllvaqhtvlnaasgytiggllglasfkraeaaaidk 173
Cdd:cd03216 72 --------------------ARRAGIAMVYQ------------------------------------------------- 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywlreiglvdraddpagdLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLIEHD 253
Cdd:cd03216 83 --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHR 141
|
250 260
....*....|....*....|..
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAE 275
Cdd:cd03216 142 LDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
15-271 |
6.91e-30 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 112.56 E-value: 6.91e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGL--VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:cd03225 1 ELKNLSFSYPDGarPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV----------------LVDGKD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEIARlaRVARTFQNIRL-FAGMTL-------LENLLVAQHTVLNAAsgytiggllglasfk 164
Cdd:cd03225 65 ------------LTKLSLKELRR--KVGLVFQNPDDqFFGPTVeeevafgLENLGLPEEEIEERV--------------- 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 165 raeaaaidkaAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHA 244
Cdd:cd03225 116 ----------EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK 185
|
250 260
....*....|....*....|....*..
gi 503183841 245 lSILLIEHDMGVVMQISDRIAVLDYGK 271
Cdd:cd03225 186 -TIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
14-286 |
2.70e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 114.02 E-value: 2.70e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFR 89
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSV----------------LVD 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANGAGavflLermpgfeiaRLAR--VARTFQNIRLFAGMTLLEN----LLVAqhtvlnaasGYT-------IGG 156
Cdd:COG1135 66 GVDLTALSERE----L---------RAARrkIGMIFQHFNLLSSRTVAENvalpLEIA---------GVPkaeirkrVAE 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 157 LLGLasfkraeaaaidkaaywlreIGLVDRADD-PA---GdlpyGAQRRLEIARAMCTDP-VLLClDEPAAGLNPRESHE 231
Cdd:COG1135 124 LLEL--------------------VGLSDKADAyPSqlsG----GQKQRVGIARALANNPkVLLC-DEATSALDPETTRS 178
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 232 LNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1135 179 ILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQ 233
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
15-276 |
3.18e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 110.70 E-value: 3.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatfrgkqwt 94
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI------------------------ 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 kangagavflleRMPGFEIAR-LARVArtfqnirlfagmtllenlLVAQHTVLNAASGYTIGGLLGLASFKRAEAAAIDK 173
Cdd:cd03235 57 ------------RVFGKPLEKeRKRIG------------------YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS 106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYW------LREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSI 247
Cdd:cd03235 107 KADKakvdeaLERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTI 185
|
250 260
....*....|....*....|....*....
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDyGKKIAEG 276
Cdd:cd03235 186 LVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
14-293 |
4.09e-29 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 111.17 E-value: 4.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI----------------LLDGKDI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKangagavfllerMPGFEiarlARVARTFQNIRLFAGMTLLENLlvaqhtvlnaASGYTIGGLlGLASFKRAEAAAidk 173
Cdd:cd03300 65 TN------------LPPHK----RPVNTVFQNYALFPHLTVFENI----------AFGLRLKKL-PKAEIKERVAEA--- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:cd03300 115 ----LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADP--RVIAAYLG 293
Cdd:cd03300 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPanRFVADFIG 232
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
11-295 |
4.41e-29 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 111.33 E-value: 4.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGrialahgseaafealpaatfrg 90
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYG---------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 kqwtkangaGAVFLL-ERMPGFEIARLarvaRtfQNIRLFAgmTLLENLLVAQHTVLNA-ASGYTigGLLGLasFKRAEA 168
Cdd:COG1119 59 ---------NDVRLFgERRGGEDVWEL----R--KRIGLVS--PALQLRFPRDETVLDVvLSGFF--DSIGL--YREPTD 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:COG1119 118 EQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLV 197
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYlGVP 295
Cdd:COG1119 198 LVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSENLSEAF-GLP 243
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
32-222 |
8.75e-29 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 107.73 E-value: 8.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQWTKANgagavfllermpgf 111
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTI----------------LLDGQDLTDDE-------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 EIARLARVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgytIGGLLGLASFKRAEAaaidkaayWLREIGLVDRADDPA 191
Cdd:pfam00005 54 RKSLRKEIGYVFQDPQLFPRLTVRENLRLGLL----------LKGLSKREKDARAEE--------ALEKLGLGDLADRPV 115
|
170 180 190
....*....|....*....|....*....|....*
gi 503183841 192 GDLP----YGAQRRLEIARAMCTDPVLLCLDEPAA 222
Cdd:pfam00005 116 GERPgtlsGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
15-276 |
1.80e-28 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 107.91 E-value: 1.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKqwt 94
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD----------------GK--- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 kangagavfLLERMPGFEIARlaRVArtfqnirlfagmtllenlLVAQhtvlnaasgytiggllglasfkraeaaaidka 174
Cdd:cd03214 62 ---------DLASLSPKELAR--KIA------------------YVPQ-------------------------------- 80
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 175 ayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDM 254
Cdd:cd03214 81 --ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158
|
250 260
....*....|....*....|..
gi 503183841 255 GVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03214 159 NLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
15-271 |
2.66e-28 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 106.95 E-value: 2.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQWT 94
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI----------------LIDGKDIA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 KAngagavfllermpgFEIARLARVARTFQnirlfagmtllenllvaqhtvlnaasgytiggllglasfkraeaaaidka 174
Cdd:cd00267 65 KL--------------PLEELRRRIGYVPQ-------------------------------------------------- 80
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 175 aywlreiglvdraddpagdLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEHDM 254
Cdd:cd00267 81 -------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR-TVIIVTHDP 140
|
250
....*....|....*..
gi 503183841 255 GVVMQISDRIAVLDYGK 271
Cdd:cd00267 141 ELAELAADRVIVLKDGK 157
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
14-271 |
5.19e-28 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 107.96 E-value: 5.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfr 89
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 gkqwtkangagavfllermpGFEIARLARVART----------FQNIRLFAGMTLLENLLVAQHtvlnaasgytiggLLG 159
Cdd:cd03255 65 --------------------GTDISKLSEKELAafrrrhigfvFQSFNLLPDLTALENVELPLL-------------LAG 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 160 LASFKRAEAAAidkaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKI 239
Cdd:cd03255 112 VPKKERRERAE-----ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLREL 186
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 240 REEHALSILLIEHDMGVVmQISDRIAVLDYGK 271
Cdd:cd03255 187 NKEAGTTIVVVTHDPELA-EYADRIIELRDGK 217
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
13-286 |
1.00e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 107.97 E-value: 1.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFG----GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEV----------------TF 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGAgavfllermpgfeiARLARVARTFQNIRlfagmtllenllvaqhTVLNAasGYTIGGLLG--LASFKRA 166
Cdd:COG1124 65 DGRPVTRRRRK--------------AFRRRVQMVFQDPY----------------ASLHP--RHTVDRILAepLRIHGLP 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDKAayWLREIGLvdrADDPAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:COG1124 113 DREERIAE--LLEQVGL---PPSFLDRYPHqlsGGQRqRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREE 187
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 503183841 243 HALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1124 188 RGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPK 231
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
14-281 |
1.40e-27 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 106.88 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYK-----PTEGRIalahgseaafealpaaTF 88
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEV----------------LL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKqwtkangagAVFLLERMPgfeIARLARVARTFQNIRLFAgMTLLENLlvaqhtvlnaASGYTIGGLLGLASFKRAEA 168
Cdd:cd03260 65 DGK---------DIYDLDVDV---LELRRRVGMVFQKPNPFP-GSIYDNV----------AYGLRLHGIKLKEELDERVE 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAidkaaywLREIGLVDRADDP--AGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAls 246
Cdd:cd03260 122 EA-------LRKAALWDEVKDRlhALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYT-- 192
|
250 260 270
....*....|....*....|....*....|....*
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:cd03260 193 IVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
14-286 |
1.88e-27 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 107.04 E-value: 1.88e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQw 93
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI----------------LFGGED- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangAGAVFLLERMPGFeiarlarvarTFQNIRLFAGMTLLENllVAqhtvlnaasgytigglLGLASFKRAEAAAIDK 173
Cdd:cd03296 66 -----ATDVPVQERNVGF----------VFQHYALFRHMTVFDN--VA----------------FGLRVKPRSERPPEAE 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREI-------GLVDRAddPAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALS 246
Cdd:cd03296 113 IRAKVHELlklvqldWLADRY--PA-QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT 189
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:cd03296 190 TVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1-285 |
2.99e-27 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 106.96 E-value: 2.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 1 MADGASDATRDDLLRvenltmRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAlahgseaaF 80
Cdd:cd03294 18 FKLLAKGKSKEEILK------KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL--------I 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 81 EALPAATFRGKQwtkangagavfLLErmpgfeiARLARVARTFQNIRLFAGMTLLENllvaqhtvlnAASGYTIGGLLGL 160
Cdd:cd03294 84 DGQDIAAMSRKE-----------LRE-------LRRKKISMVFQSFALLPHRTVLEN----------VAFGLEVQGVPRA 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 161 ASFKRAEAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIR 240
Cdd:cd03294 136 EREERAAEA--------LELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 503183841 241 EEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:cd03294 208 AELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
13-286 |
5.73e-27 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 107.88 E-value: 5.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkq 92
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLD------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpGFEIARLA----RVARTFQNIRLFAGMTLLENllVAqhtvlnaasgYtiggllGLASFKRAEA 168
Cdd:COG3842 66 -----------------GRDVTGLPpekrNVGMVFQDYALFPHLTVAEN--VA----------F------GLRMRGVPKA 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:COG3842 111 EIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFI 190
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG3842 191 YVTHDQEEALALADRIAVMNDGRIEQVGTPEEIYERPA 228
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
14-285 |
6.15e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 105.46 E-value: 6.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGL-VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:cd03295 1 IEFENVTKRYGGGkKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI----------------FIDGED 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKANGAGavflLERMPGFEIarlarvartfQNIRLFAGMTLLENL-LVAQhtvlnaasgytiggLLGLASFKRAEAAAI 171
Cdd:cd03295 65 IREQDPVE----LRRKIGYVI----------QQIGLFPHMTVEENIaLVPK--------------LLKWPKEKIRERADE 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 DKAAYWLREIGLVDRADDpagDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIE 251
Cdd:cd03295 117 LLALVGLDPAEFADRYPH---ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 252 HDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:cd03295 194 HDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
14-286 |
1.63e-26 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 105.05 E-value: 1.63e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFealpaatFRGKqw 93
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV-NGQTINL-------VRDK-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkaNGAGAVFLLERMpgfEIARlARVARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytigGLLGLASFKRAEaaaidk 173
Cdd:PRK10619 76 ---DGQLKVADKNQL---RLLR-TRLTMVFQHFNLWSHMTVLENVMEAPIQVL---------GLSKQEARERAV------ 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaYWLREIGLVDRADD--PAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIE 251
Cdd:PRK10619 134 --KYLAKVGIDERAQGkyPV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVT 209
|
250 260 270
....*....|....*....|....*....|....*
gi 503183841 252 HDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK10619 210 HEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQ 244
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
14-293 |
3.54e-26 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.57 E-value: 3.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVaVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgkqw 93
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL--------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkaNGAGAVFLLERMPGFEIarlarvarTFQNIRLFAGMTLLENLLVAQHTVLN-----AASGYTIGGLLGLASfkraea 168
Cdd:cd03299 59 ---NGKDITNLPPEKRDISY--------VPQNYALFPHMTVYKNIAYGLKKRKVdkkeiERKVLEIAEMLGIDH------ 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaaywlreigLVDRadDPAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:cd03299 122 --------------LLNR--KPE-TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI--RADPRVIAAYLG 293
Cdd:cd03299 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVfkKPKNEFVAEFLG 231
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
11-275 |
7.59e-26 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 102.43 E-value: 7.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFG----GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaa 86
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV---------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 87 TFRGKQWTKANGAG-AVFLLERMpGFeiarlarVartFQNIRLFAGMTLLENLLVAQhtvlnaasgyTIGGLLGLASFKR 165
Cdd:COG1136 66 LIDGQDISSLSERElARLRRRHI-GF-------V---FQFFNLLPELTALENVALPL----------LLAGVSRKERRER 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEaaaidkaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAL 245
Cdd:COG1136 125 AR--------ELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGT 196
|
250 260 270
....*....|....*....|....*....|
gi 503183841 246 SILLIEHDMgVVMQISDRIAVLDYGKKIAE 275
Cdd:COG1136 197 TIVMVTHDP-ELAARADRVIRLRDGRIVSD 225
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
18-297 |
7.88e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 104.91 E-value: 7.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 18 NLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgkqwtkan 97
Cdd:PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV------------------------- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 98 gagavfLLERMPGfeIARLAR----VARTFQNIRLfaGMTLLENLLV-AQHTVLNAASGYTIggLLGLASFKRaeaaaid 172
Cdd:PRK13536 101 ------LGVPVPA--RARLARarigVVPQFDNLDL--EFTVRENLLVfGRYFGMSTREIEAV--IPSLLEFAR------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywlreigLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESH----ELNALLLKireehALSIL 248
Cdd:PRK13536 162 ----------LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHliweRLRSLLAR-----GKTIL 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP---RVIAAYLGVPDD 297
Cdd:PRK13536 227 LTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHigcQVIEIYGGDPHE 278
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
13-244 |
2.60e-25 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 100.25 E-value: 2.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEV----------------LWNGEP 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKAngagavfllermpgfEIARLARVARTFQNIRLFAGMTLLENLLVAQhtvlnAASGYTIGGLLGLAsfkraeaaaid 172
Cdd:COG4133 66 IRDA---------------REDYRRRLAYLGHADGLKPELTVRENLRFWA-----ALYGLRADREAIDE----------- 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503183841 173 kaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLlkirEEHA 244
Cdd:COG4133 115 ----ALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELI----AAHL 178
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
14-281 |
2.96e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 102.58 E-value: 2.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafEALPAATFRGKQw 93
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG------EPVPSRARHARQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpgfeiarlaRVARTFQNIRLFAGMTLLENLLV-AQHTVLNAASGYTIggLLGLASFKRaeaaaid 172
Cdd:PRK13537 81 ------------------------RVGVVPQFDNLDPDFTVRENLLVfGRYFGLSAAAARAL--VPPLLEFAK------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywlreigLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESH----ELNALLLKIReehalSIL 248
Cdd:PRK13537 128 ----------LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHlmweRLRSLLARGK-----TIL 192
|
250 260 270
....*....|....*....|....*....|...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:PRK13537 193 LTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
18-285 |
7.39e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 102.49 E-value: 7.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 18 NLTMRFGGL-VAVDklsFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTka 96
Cdd:COG4148 6 DFRLRRGGFtLDVD---FTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLG----------------GEVLQ-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 97 NGAGAVFL-LERmpgfeiaRlaRVARTFQNIRLFAGMTLLENLLVAQHTVLNAASGYTIGG---LLGLAsfkraeaaaid 172
Cdd:COG4148 65 DSARGIFLpPHR-------R--RIGYVFQEARLFPHLSVRGNLLYGRKRAPRAERRISFDEvveLLGIG----------- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywlreiGLVDRaddPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:COG4148 125 ---------HLLDR---RPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSH 192
|
250 260 270
....*....|....*....|....*....|...
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:COG4148 193 SLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
13-291 |
1.62e-24 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 99.42 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQ 92
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLN----------------GRP 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEIARLARVartfqnirlfagmtllenllVAQHTVLNAAsgYTIGG--LLGLASFKRAEAAA 170
Cdd:COG4559 65 ------------LAAWSPWELARRRAV--------------------LPQHSSLAFP--FTVEEvvALGRAPHGSSAAQD 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMC-------TDPVLLCLDEPAAGLNPRESHELNALLlkiRE-- 241
Cdd:COG4559 111 RQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLA---RQla 187
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 503183841 242 EHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAY 291
Cdd:COG4559 188 RRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
29-285 |
1.90e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 99.90 E-value: 1.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 29 VDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTKANGAGAVFLLERm 108
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA----------------GYHITPETGNKNLKKLRK- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 109 pgfeiarlaRVARTFQnirlFAGMTLLENllvaqhTVLNAAsgytiggLLGLASFKRAEAAAIDKAAYWLREIGL-VDRA 187
Cdd:PRK13641 86 ---------KVSLVFQ----FPEAQLFEN------TVLKDV-------EFGPKNFGFSEDEAKEKALKWLKKVGLsEDLI 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 188 DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKI-REEHalSILLIEHDMGVVMQISDRIAV 266
Cdd:PRK13641 140 SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYqKAGH--TVILVTHNMDDVAEYADDVLV 217
|
250
....*....|....*....
gi 503183841 267 LDYGKKIAEGTPDEIRADP 285
Cdd:PRK13641 218 LEHGKLIKHASPKEIFSDK 236
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
14-276 |
2.70e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 97.74 E-value: 2.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV----------------LFDGKPL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAGAVFLLERmpgfeiarlarvartfqniR-LFAGMTLLENLLvaqhtvlnaasgYtIGGLLGLasfkrAEAAAID 172
Cdd:cd03269 65 DIAARNRIGYLPEE-------------------RgLYPKMKVIDQLV------------Y-LAQLKGL-----KKEEARR 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPresheLNALLLK--IRE--EHALSIL 248
Cdd:cd03269 108 RIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-----VNVELLKdvIRElaRAGKTVI 182
|
250 260
....*....|....*....|....*...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03269 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
14-276 |
3.97e-24 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 97.26 E-value: 3.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGdITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAafealpaatfrGKQW 93
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI-DGQDV-----------LKQP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGagavfLLERMPgfeiarlarvartfQNIRLFAGMTLLENLlvaqhtvlnaasgYTIGGLLGLASFKRAEAAAIDk 173
Cdd:cd03264 68 QKLRR-----RIGYLP--------------QEFGVYPNFTVREFL-------------DYIAWLKGIPSKEVKARVDEV- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHD 253
Cdd:cd03264 115 ----LELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHI 188
|
250 260
....*....|....*....|...
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03264 189 VEDVESLCNQVAVLNKGKLVFEG 211
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-275 |
4.17e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 98.62 E-value: 4.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFG-GLV----AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatf 88
Cdd:COG1101 2 LELKNLSKTFNpGTVnekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILID--------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 rGKQWTkangagavflleRMPGFEIARLarVARTFQNIRL--FAGMTLLENLLVAqhtvlnAASGYTIGGLLGLASFKRA 166
Cdd:COG1101 67 -GKDVT------------KLPEYKRAKY--IGRVFQDPMMgtAPSMTIEENLALA------YRRGKRRGLRRGLTKKRRE 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 eaaaidkaayWLRE------IGLVDRADDPAGDLPyGAQRRLeIARAMCT--DPVLLCLDEPAAGLNPRESHELNALLLK 238
Cdd:COG1101 126 ----------LFREllatlgLGLENRLDTKVGLLS-GGQRQA-LSLLMATltKPKLLLLDEHTAALDPKTAALVLELTEK 193
|
250 260 270
....*....|....*....|....*....|....*..
gi 503183841 239 IREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAE 275
Cdd:COG1101 194 IVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILD 230
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
24-285 |
5.08e-24 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 100.31 E-value: 5.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 24 GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGKQWTKANGAGavf 103
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI----------------DGENIMKQSPVE--- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 104 llermpgFEIARLARVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgytiggLLGLASFKRAEAAAIDkaaywLREIGL 183
Cdd:TIGR01186 65 -------LREVRRKKIGMVFQQFALFPHMTILQNTSLGPE-------------LLGWPEQERKEKALEL-----LKLVGL 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 184 VDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDR 263
Cdd:TIGR01186 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDR 199
|
250 260
....*....|....*....|..
gi 503183841 264 IAVLDYGKKIAEGTPDEIRADP 285
Cdd:TIGR01186 200 IVIMKAGEIVQVGTPDEILRNP 221
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
13-286 |
8.95e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 98.59 E-value: 8.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKP---TEGRIalahgseaafealpa 85
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEI--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 aTFRGKQWTKANGAGavflLERMpgfeiaRLARVARTFQ------NIRLFAGMTLLENLLVaqHTVLNAAsgytiggllg 159
Cdd:COG0444 66 -LFDGEDLLKLSEKE----LRKI------RGREIQMIFQdpmtslNPVMTVGDQIAEPLRI--HGGLSKA---------- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 160 lASFKRAEAaaidkaayWLREIGLvDRADDPAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGL---------Np 226
Cdd:COG0444 123 -EARERAIE--------LLERVGL-PDPERRLDRYPHelsGGMRqRVMIARALALEPKLLIADEPTTALdvtiqaqilN- 191
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503183841 227 reshelnaLLLKIREEHALSILLIEHDMGVVMQISDRIAVLdYGKKIAE-GTPDEIRADPR 286
Cdd:COG0444 192 --------LLKDLQRELGLAILFITHDLGVVAEIADRVAVM-YAGRIVEeGPVEELFENPR 243
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
14-271 |
1.49e-23 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 94.76 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGK 91
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI----------------LIDGV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QWTKANGAgavfllermpgfeiARLARVARTFQNIRLFAGmTLLENLLvaqhtvlnaaSGytiggllglasfkraeaaai 171
Cdd:cd03228 65 DLRDLDLE--------------SLRKNIAYVPQDPFLFSG-TIRENIL----------SG-------------------- 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 dkaaywlreiglvdraddpagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIE 251
Cdd:cd03228 100 -------------------------GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIA 152
|
250 260
....*....|....*....|
gi 503183841 252 HDMGVVMQiSDRIAVLDYGK 271
Cdd:cd03228 153 HRLSTIRD-ADRIIVLDDGR 171
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
14-286 |
1.59e-23 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 98.68 E-value: 1.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgsEAAFEALPAAtfrgkqw 93
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNG--RDLFTNLPPR------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllERmpgfeiarlaRVARTFQNIRLFAGMTLLENllVAQhtvlnaasgytiggllGLASFKRAEAAAIDK 173
Cdd:COG1118 74 ------------ER----------RVGFVFQHYALFPHMTVAEN--IAF----------------GLRVRPPSKAEIRAR 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREIGLvdraDDPAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:COG1118 114 VEELLELVQL----EGLADRYPSqlsGGQRqRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVF 189
|
250 260 270
....*....|....*....|....*....|....*..
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1118 190 VTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPA 226
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
14-293 |
2.06e-23 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 95.98 E-value: 2.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAvdKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRI----------------LWNGQDL 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAgavfllERmPgfeiarlarVARTFQNIRLFAGMTLLEN----------LLVAQHTVLNAAsgytiggllglasf 163
Cdd:COG3840 64 TALPPA------ER-P---------VSMLFQENNLFPHLTVAQNiglglrpglkLTAEQRAQVEQA-------------- 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 kraeaaaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTD-PVLLcLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:COG3840 114 --------------LERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKrPILL-LDEPFSALDPALRQEMLDLVDELCRE 178
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 503183841 243 HALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI--RADPRVIAAYLG 293
Cdd:COG3840 179 RGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALldGEPPPALAAYLG 231
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
14-283 |
4.43e-23 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 99.14 E-value: 4.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLV--AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgk 91
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILI------------------- 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkaNGAgavflleRMPGFEIARLAR-VARTFQNIRLFAGmTLLENLLVAQHT-----VLNAASgytiggLLGLASFkr 165
Cdd:COG2274 535 -----DGI-------DLRQIDPASLRRqIGVVLQDVFLFSG-TIRENITLGDPDatdeeIIEAAR------LAGLHDF-- 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 aeaaaidkaaywlreiglVDRadDPAG----------DLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNAL 235
Cdd:COG2274 594 ------------------IEA--LPMGydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILEN 653
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 503183841 236 LLKIREEHalSILLIEHDMGVVmQISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:COG2274 654 LRRLLKGR--TVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
8-283 |
1.07e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 97.91 E-value: 1.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 8 ATRDDLLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafeaLPAA 86
Cdd:COG4988 331 AAGPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILING--------VDLS 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 87 TFRGKQWTKangagavfllermpgfeiaRLARVArtfQNIRLFAGmTLLENLLVAQ--------HTVLNAAsgytiggll 158
Cdd:COG4988 403 DLDPASWRR-------------------QIAWVP---QNPYLFAG-TIRENLRLGRpdasdeelEAALEAA--------- 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 159 GLASFkraeaaaidkaaywlreiglVDRAddPAG-DLPYGAQ---------RRLEIARAMCTDPVLLCLDEPAAGLNPRE 228
Cdd:COG4988 451 GLDEF--------------------VAAL--PDGlDTPLGEGgrglsggqaQRLALARALLRDAPLLLLDEPTAHLDAET 508
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 229 SHELNALLLKIREEHALsiLLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:COG4988 509 EAEILQALRRLAKGRTV--ILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLA 560
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
13-293 |
1.13e-22 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 94.18 E-value: 1.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI----------------VFDGKD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTkangagavfllermpGFEIARLAR--VARTFQNIRLFAGMTLLENLlvaqhtvlnaasgyTIGGLLGlasfKRAEAAA 170
Cdd:PRK11614 69 IT---------------DWQTAKIMReaVAIVPEGRRVFSRMTVEENL--------------AMGGFFA----ERDQFQE 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREiGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLI 250
Cdd:PRK11614 116 RIKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLV 193
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:PRK11614 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
14-300 |
2.59e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 96.80 E-value: 2.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGF--YKPTEGRIA--LAHGSEAAFEALPaaTFR 89
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIyhVALCEKCGYVERP--SKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANGAGAVFLLERMPGFEIARLA---RVARTFQniRLFA---GMTLLENLLVAQHTVlnaasGYTiggllGLASF 163
Cdd:TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRirkRIAIMLQ--RTFAlygDDTVLDNVLEALEEI-----GYE-----GKEAV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 KRAEAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEH 243
Cdd:TIGR03269 147 GRAVDL--------IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 503183841 244 ALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEiradprVIAAYL-GVPDDEVE 300
Cdd:TIGR03269 219 GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDE------VVAVFMeGVSEVEKE 270
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
15-286 |
2.90e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 94.87 E-value: 2.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrG 90
Cdd:PRK11153 3 ELKNISKVFPQggrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD----------------G 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 KQWTKANGAGAvfllermpgfeiaRLAR--VARTFQNIRLFAGMTLLENL---LVAQHTVlNAASGYTIGGLLGLasfkr 165
Cdd:PRK11153 67 QDLTALSEKEL-------------RKARrqIGMIFQHFNLLSSRTVFDNValpLELAGTP-KAEIKARVTELLEL----- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 aeaaaidkaaywlreIGLVDRADD-PAgDLPYGAQRRLEIARAMCTDP-VLLClDEPAAGLNPRESHELNALLLKIREEH 243
Cdd:PRK11153 128 ---------------VGLSDKADRyPA-QLSGGQKQRVAIARALASNPkVLLC-DEATSALDPATTRSILELLKDINREL 190
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 244 ALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK11153 191 GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
11-288 |
4.96e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 93.37 E-value: 4.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFG-GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatFR 89
Cdd:PRK13636 3 DYILKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-----------------LF 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANGAGAVFLLERmpgfeiarlarVARTFQNirlfagmtllenllvAQHTVLNAASGYTIGglLGLASFKRAEAA 169
Cdd:PRK13636 66 DGKPIDYSRKGLMKLRES-----------VGMVFQD---------------PDNQLFSASVYQDVS--FGAVNLKLPEDE 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:PRK13636 118 VRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
|
250 260 270
....*....|....*....|....*....|....*....
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVI 288
Cdd:PRK13636 198 ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
4-285 |
5.12e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 95.99 E-value: 5.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 4 GASDATRDDLLRVENLTMRF--GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafe 81
Cdd:COG4987 324 EPAPAPGGPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGG------- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 82 aLPAATFRGKQWTkangagavfllermpgfeiarlARVARTFQNIRLFAGmTLLENLLVAQ--------HTVLNAAsgyt 153
Cdd:COG4987 397 -VDLRDLDEDDLR----------------------RRIAVVPQRPHLFDT-TLRENLRLARpdatdeelWAALERV---- 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 154 iggllGLASfkraeaaaidkaayWLReiGLVDRADDPAGD----LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRES 229
Cdd:COG4987 449 -----GLGD--------------WLA--ALPDGLDTWLGEggrrLSGGERRRLALARALLRDAPILLLDEPTEGLDAATE 507
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 230 HELNALLLKIREEHALsiLLIEHDMgVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:COG4987 508 QALLADLLEALAGRTV--LLITHRL-AGLERMDRILVLEDGRIVEQGTHEELLAQN 560
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
28-296 |
6.30e-22 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 92.90 E-value: 6.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTF---FNcvtGFYKPTEGRIALahgseaafealpaatfrgkqwtkaNGagavFL 104
Cdd:TIGR04521 20 ALDDVSLTIEDGEFVAIIGHTGSGKSTLiqhLN---GLLKPTSGTVTI------------------------DG----RD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 105 LERMPGFEIARL-ARVARTFQN--IRLFAgMTLLE-------NLLVAQHTVLNAAsgytiggllglasfkraeaaaidka 174
Cdd:TIGR04521 69 ITAKKKKKLKDLrKKVGLVFQFpeHQLFE-ETVYKdiafgpkNLGLSEEEAEERV------------------------- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 175 AYWLREIGL----VDRadDPAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLI 250
Cdd:TIGR04521 123 KEALELVGLdeeyLER--SPF-ELSGGQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILV 199
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAY-LGVPD 296
Cdd:TIGR04521 200 THSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVDELEKIgLDVPE 246
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
8-286 |
6.37e-22 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 93.64 E-value: 6.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 8 ATRDDLLRVENLTMRF---GGLV--------AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgs 76
Cdd:COG4608 2 AMAEPLLEVRDLKKHFpvrGGLFgrtvgvvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEI------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 77 eaafealpaaTFRGKQWTKANGAgavfllermpgfeiaRLARVART----FQ------NIRLFAGMTLLENLLVaqHTVL 146
Cdd:COG4608 76 ----------LFDGQDITGLSGR---------------ELRPLRRRmqmvFQdpyaslNPRMTVGDIIAEPLRI--HGLA 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 147 NAASgytiggllglasfkRAEAAAIDkaaywLREIGLvdRADDpAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEP-- 220
Cdd:COG4608 129 SKAE--------------RRERVAEL-----LELVGL--RPEH-ADRYPHefsGGQRqRIGIARALALNPKLIVCDEPvs 186
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 221 -------AAGLNpreshelnaLLLKIREEHALSILLIEHDMGVVMQISDRIAVLdYGKKIAE-GTPDEIRADPR 286
Cdd:COG4608 187 aldvsiqAQVLN---------LLEDLQDELGLTYLFISHDLSVVRHISDRVAVM-YLGKIVEiAPRDELYARPL 250
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
13-280 |
1.10e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 91.76 E-value: 1.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQ 92
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN----------------GRP 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEIARLARVARtfqnirlfagmtllenllvaQHTVLNAAsgYT----IGglLGLASFKRAEA 168
Cdd:PRK13548 66 ------------LADWSPAELARRRAVLP--------------------QHSSLSFP--FTveevVA--MGRAPHGLSRA 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMC------TDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:PRK13548 110 EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 243 HALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDE 280
Cdd:PRK13548 190 RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
14-290 |
1.24e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 91.85 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLV----AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFR 89
Cdd:COG4525 4 LTVRHVSVRYPGGGqpqpALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEI----------------TLD 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTkanGAGAvfllERmpgfeiarlarvARTFQNIRLFAGMTLLENllVAqhtvlnaasgytigglLGLASFKRAEAA 169
Cdd:COG4525 68 GVPVT---GPGA----DR------------GVVFQKDALLPWLNVLDN--VA----------------FGLRLRGVPKAE 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNP--RESheLNALLLKIREEHALSI 247
Cdd:COG4525 111 RRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDAltREQ--MQELLLDVWQRTGKGV 188
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 503183841 248 LLIEHD------MG---VVM-----QISDRIAvLDYGKKIAEGTP-DEIRADPRVIAA 290
Cdd:COG4525 189 FLITHSveealfLAtrlVVMspgpgRIVERLE-LDFSRRFLAGEDaRAIKSDPAFIAL 245
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
14-271 |
1.27e-21 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 90.88 E-value: 1.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgkq 92
Cdd:COG2884 2 IRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLV-------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkaNGagavFLLERMPGFEIARLAR----VartFQNIRLFAGMTLLENLLVAQHtvlnaASGYTIGgllglASFKRAEA 168
Cdd:COG2884 62 ----NG----QDLSRLKRREIPYLRRrigvV---FQDFRLLPDRTVYENVALPLR-----VTGKSRK-----EIRRRVRE 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSIL 248
Cdd:COG2884 121 --------VLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGT-TVL 191
|
250 260
....*....|....*....|...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGK 271
Cdd:COG2884 192 IATHDLELVDRMPKRVLELEDGR 214
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
13-295 |
1.44e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 92.06 E-value: 1.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAFEALPAATFRGK 91
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLLEVRKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpgfeiarlarVARTFQNI--RLFAGmTLLENllVAqhtvlnaasgytIGGL-LGLAS---FKR 165
Cdd:PRK13639 80 ---------------------------VGIVFQNPddQLFAP-TVEED--VA------------FGPLnLGLSKeevEKR 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhAL 245
Cdd:PRK13639 118 VKEA--------LKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GI 188
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 503183841 246 SILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVI-AAYLGVP 295
Cdd:PRK13639 189 TIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIrKANLRLP 239
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
13-286 |
2.10e-21 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 91.14 E-value: 2.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKq 92
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV----------------HYRMR- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangAGAVFLLERMPGFEIARLARVARTFqnirlfagmtllenllVAQHTV----LNAASGYTIGGLLgLASFKRAEA 168
Cdd:PRK11701 69 ------DGQLRDLYALSEAERRRLLRTEWGF----------------VHQHPRdglrMQVSAGGNIGERL-MAVGARHYG 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLR--EIGLvDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALS 246
Cdd:PRK11701 126 DIRATAGDWLErvEIDA-ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK11701 205 VVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
13-293 |
5.80e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 91.82 E-value: 5.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEaafealpaatfrgkq 92
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML-DGVD--------------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavflLERMPGFEiarlARVARTFQNIRLFAGMTLLENLlvaqhtvlnaasgytiggLLGLASFKRAEAAAID 172
Cdd:PRK11607 83 ------------LSHVPPYQ----RPINMMFQSYALFPHMTVEQNI------------------AFGLKQDKLPKAEIAS 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:PRK11607 129 RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP--RVIAAYLG 293
Cdd:PRK11607 209 DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPttRYSAEFIG 251
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
13-276 |
6.15e-21 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 88.96 E-value: 6.15e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAFEalPAATF 88
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD-GFDVVKE--PAEAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RgkqwtkangagavfllermpgfeiarlaRVARTFQNIRLFAGMTLLENLLVaqhtvlnaasgytIGGLLGLasfKRAEA 168
Cdd:cd03266 78 R----------------------------RLGFVSDSTGLYDRLTARENLEY-------------FAGLYGL---KGDEL 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGlvDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPREShelNALLLKIREEHAL--S 246
Cdd:cd03266 114 TARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT---RALREFIRQLRALgkC 188
|
250 260 270
....*....|....*....|....*....|
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEG 276
Cdd:cd03266 189 ILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
13-293 |
1.11e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 88.80 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFEALPAATFRGkq 92
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII-DDEDISLLPLHARARRG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpgfeIARLARVARTFQNIRLFagmtllENLLvaqhTVLNAASGytiggllgLASFKRAEAAAID 172
Cdd:PRK10895 80 --------------------IGYLPQEASIFRRLSVY------DNLM----AVLQIRDD--------LSAEQREDRANEL 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIReEHALSILLIEH 252
Cdd:PRK10895 122 -----MEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDH 195
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLG 293
Cdd:PRK10895 196 NVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLG 236
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
11-290 |
1.20e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 89.41 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAafealpaaTFR 89
Cdd:PRK13647 2 DNIIEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVM-GREV--------NAE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKAngagavfllermpgfeiarlaRVARTFQNI--RLFAgMTLLENLlvaqhtvlnaASGYTIGGLLGLASFKRAE 167
Cdd:PRK13647 73 NEKWVRS---------------------KVGLVFQDPddQVFS-STVWDDV----------AFGPVNMGLDKDEVERRVE 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 AAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSI 247
Cdd:PRK13647 121 EA--------LKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTV 191
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPdEIRADPRVIAA 290
Cdd:PRK13647 192 IVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDEDIVEQ 233
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
14-271 |
1.46e-20 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 87.70 E-value: 1.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI----------------YIGGRDV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAgavfllERmpgfeiarlaRVARTFQNIRLFAGMTLLENLlvaqhtvlnaASGytigglLGLASFKRAEAAAIDK 173
Cdd:cd03301 65 TDLPPK------DR----------DIAMVFQNYALYPHMTVYDNI----------AFG------LKLRKVPKDEIDERVR 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREIG-LVDRAddPAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:cd03301 113 EVAELLQIEhLLDRK--PK-QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189
|
250
....*....|....*....
gi 503183841 253 DMGVVMQISDRIAVLDYGK 271
Cdd:cd03301 190 DQVEAMTMADRIAVMNDGQ 208
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
18-285 |
1.47e-20 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 88.23 E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 18 NLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGseaafealpaatfrgkqwTKAN 97
Cdd:PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDG------------------LKVN 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 98 GAGAVfllERmpgfEIARLArvARTFQNIRLFAGMTLLENLLVAQHTVLNAASgytiggllglASFKRAEAAAidkaayw 177
Cdd:PRK09493 67 DPKVD---ER----LIRQEA--GMVFQQFYLFPHLTALENVMFGPLRVRGASK----------EEAEKQAREL------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 178 LREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDMGVV 257
Cdd:PRK09493 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFA 199
|
250 260
....*....|....*....|....*...
gi 503183841 258 MQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK09493 200 EKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
32-276 |
2.12e-20 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 87.16 E-value: 2.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFeALPAatfrgkqwtkangagavflleRMPgf 111
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI-NGVDVTA-APPA---------------------DRP-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 eiarlarVARTFQNIRLFAGMTLLENllvaqhtvlnaasgytIGglLGLASFKRAEAAAIDKAAYWLREIGLVDRADDPA 191
Cdd:cd03298 72 -------VSMLFQENNLFAHLTVEQN----------------VG--LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 192 GDLPYGAQRRLEIARAMCTD-PVLLcLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYG 270
Cdd:cd03298 127 GELSGGERQRVALARVLVRDkPVLL-LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
....*.
gi 503183841 271 KKIAEG 276
Cdd:cd03298 206 RIAAQG 211
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
29-270 |
2.36e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 87.52 E-value: 2.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 29 VDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGKQWTKangagavfllerm 108
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL----------------EGKQITE------------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 109 PGFEiaRLArvarTFQNIRLFAGMTLLENLLVAQHTVLNAASgytiggllglASFKRAEAAAIdkaaywLREIGLVDRAD 188
Cdd:TIGR01184 52 PGPD--RMV----VFQNYSLLPWLTVRENIALAVDRVLPDLS----------KSERRAIVEEH------IALVGLTEAAD 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 189 DPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:TIGR01184 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT 189
|
..
gi 503183841 269 YG 270
Cdd:TIGR01184 190 NG 191
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
11-289 |
8.26e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 87.98 E-value: 8.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGG-----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpa 85
Cdd:PRK13631 19 DIILRVKNLYCVFDEkqeneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI--------------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 atfrgkqWTKANGAGAVFLLERMPGF----EIARLARVARTFQNIRLFAGMTLLENllvaqhtvlnaasgyTIGG--LLG 159
Cdd:PRK13631 84 -------QVGDIYIGDKKNNHELITNpyskKIKNFKELRRRVSMVFQFPEYQLFKD---------------TIEKdiMFG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 160 LASFKRAEAAAIDKAAYWLREIGL----VDRAddPAGdLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNAL 235
Cdd:PRK13631 142 PVALGVKKSEAKKLAKFYLNKMGLddsyLERS--PFG-LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 503183841 236 LLKIREEHAlSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIA 289
Cdd:PRK13631 219 ILDAKANNK-TVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
13-295 |
1.21e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 86.78 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLV-AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGK 91
Cdd:PRK13652 3 LIETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI----------------RGE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QWTKANGAgavfllermpgfEIARLarVARTFQNIrlfagmtllENLLVAQHTVLNAASGYTIGGLLGLASFKRAEAAai 171
Cdd:PRK13652 67 PITKENIR------------EVRKF--VGLVFQNP---------DDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA-- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 dkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIE 251
Cdd:PRK13652 122 ------LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 503183841 252 HDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIA-AYLGVP 295
Cdd:PRK13652 196 HQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLArVHLDLP 240
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
27-276 |
2.14e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 85.08 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 27 VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafEALPaatfrgkqWtkangagavfllE 106
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA-------GLVP--------W------------K 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 107 RMPGFeiarLARVARTF-QNIRLFAGMTLLENLLVAQHTvlnaasgYTIGGllglASFKRAEAAAIDkaaywLREIGlvD 185
Cdd:cd03267 88 RRKKF----LRRIGVVFgQKTQLWWDLPVIDSFYLLAAI-------YDLPP----ARFKKRLDELSE-----LLDLE--E 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 186 RADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIA 265
Cdd:cd03267 146 LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
250
....*....|.
gi 503183841 266 VLDYGKKIAEG 276
Cdd:cd03267 226 VIDKGRLLYDG 236
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
13-289 |
2.23e-19 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 85.52 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKq 92
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD----------------GK- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtKANGAGAvfllERmpgfeiarlarvARTFQNirlfagmtllENLLVAQHTVLNAASGytigglLGLASFKRAEAAAID 172
Cdd:PRK11248 64 --PVEGPGA----ER------------GVVFQN----------EGLLPWRNVQDNVAFG------LQLAGVEKMQRLEIA 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:PRK11248 110 HQM--LKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 503183841 253 DM--GVVM------------QISDRIAvLDYGKKIAEGTP-DEIRADPRVIA 289
Cdd:PRK11248 188 DIeeAVFMatelvllspgpgRVVERLP-LNFARRFVAGESsRSIKSDPQFIA 238
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
28-283 |
2.30e-19 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 84.97 E-value: 2.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatfrgkqwtkangagavfLLER 107
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI---------------------------------LIDG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 MPGFEIAR---LARVARTFQNIRLFAGmTLLENLLV----AQHTVLNAASgytigGLLGLASFKRAeaaaidkaaywlRE 180
Cdd:cd03254 65 IDIRDISRkslRSMIGVVLQDTFLFSG-TIMENIRLgrpnATDEEVIEAA-----KEAGAHDFIMK------------LP 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 181 IGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHDMGVVmQI 260
Cdd:cd03254 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLSTI-KN 203
|
250 260
....*....|....*....|...
gi 503183841 261 SDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:cd03254 204 ADKILVLDDGKIIEEGTHDELLA 226
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
14-285 |
2.58e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 87.40 E-value: 2.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAfeALPAATFRGkqw 93
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQV-LIDGVDIA--KISDAELRE--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpgfeiARLARVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgytiggLLGLASFKRAEAAAIDk 173
Cdd:PRK10070 103 --------------------VRRKKIAMVFQSFALMPHMTVLDNTAFGME-------------LAGINAEERREKALDA- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:PRK10070 149 ----LRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK10070 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
6-267 |
2.59e-19 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 88.11 E-value: 2.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 6 SDATRDDLLRVENLTMRFGG-LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEAlp 84
Cdd:TIGR02857 314 VTAAPASSLEFSGVSVAYPGrRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-- 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 85 aatfrgKQWTKangagavfllermpgfeiarlaRVARTFQNIRLFAGmTLLENLLVAQhtvlNAASGYTIGGLLGLASFK 164
Cdd:TIGR02857 392 ------DSWRD----------------------QIAWVPQHPFLFAG-TIAENIRLAR----PDASDAEIREALERAGLD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 165 RAEAAAIDKaayWLREIGlvdraDDPAGdLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHA 244
Cdd:TIGR02857 439 EFVAALPQG---LDTPIG-----EGGAG-LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRT 509
|
250 260
....*....|....*....|...
gi 503183841 245 LsiLLIEHDMgVVMQISDRIAVL 267
Cdd:TIGR02857 510 V--LLVTHRL-ALAALADRIVVL 529
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-286 |
3.13e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 84.96 E-value: 3.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFykptegrialahgseaaFEALPAATFRGKQW 93
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL-----------------IELYPEARVSGEVY 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANgagAVFlleRMPGFEIARlaRVARTFQNIRLFAGMTLLENllVAQHTVLNAasgytiggllgLASFKRAEAAAIDk 173
Cdd:PRK14247 67 LDGQ---DIF---KMDVIELRR--RVQMVFQIPNPIPNLSIFEN--VALGLKLNR-----------LVKSKKELQERVR- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aayWLREIGLV-----DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhaLSIL 248
Cdd:PRK14247 125 ---WALEKAQLwdevkDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIV 199
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK14247 200 LVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
14-274 |
3.35e-19 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 87.66 E-value: 3.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFealpaatfrgkqw 93
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI-DGQEMRF------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkANGAGAVfllermpgfeiarLARVARTFQNIRLFAGMTLLENLLVAQhtvLNAAsgytiGGLLGLASFKRAEAAAidk 173
Cdd:PRK11288 71 --ASTTAAL-------------AAGVAIIYQELHLVPEMTVAENLYLGQ---LPHK-----GGIVNRRLLNYEAREQ--- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALsILLIEHD 253
Cdd:PRK11288 125 ----LEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV-ILYVSHR 199
|
250 260
....*....|....*....|.
gi 503183841 254 MGVVMQISDRIAVLDYGKKIA 274
Cdd:PRK11288 200 MEEIFALCDAITVFKDGRYVA 220
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
16-286 |
3.44e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 84.80 E-value: 3.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALpaatfrGKQwtk 95
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL------SQQ--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 96 angAGAVFLLERMPGFeiarlarvarTFQNIRLFAGMTLLENLLVAQHTVLNAASGYTIGGLLGLasfkraeaaaidkaa 175
Cdd:PRK11264 77 ---KGLIRQLRQHVGF----------VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAREL--------------- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 176 ywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEHDMG 255
Cdd:PRK11264 129 --LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR-TMVIVTHEMS 205
|
250 260 270
....*....|....*....|....*....|.
gi 503183841 256 VVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK11264 206 FARDVADRAIFMDQGRIVEQGPAKALFADPQ 236
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
35-296 |
4.21e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 85.46 E-value: 4.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 35 TARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafEALPAATFRGKQwtkangagavflLERMpgfeia 114
Cdd:PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIG-------ERVITAGKKNKK------------LKPL------ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 115 RlARVARTFQnirlFAGMTLLEnllvaqHTVLNAASgytigglLGLASFKRAEAAAIDKAAYWLREIGLV-DRADDPAGD 193
Cdd:PRK13634 84 R-KKVGIVFQ----FPEHQLFE------ETVEKDIC-------FGPMNFGVSEEDAKQKAREMIELVGLPeELLARSPFE 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 194 LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKI 273
Cdd:PRK13634 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
250 260
....*....|....*....|....
gi 503183841 274 AEGTPDEIRADPRVIAAY-LGVPD 296
Cdd:PRK13634 226 LQGTPREIFADPDELEAIgLDLPE 249
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
14-295 |
6.57e-19 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 85.51 E-value: 6.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAfeALPAAtfrgkqw 93
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIG-GRDVT--DLPPK------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllERmpgfeiarlaRVARTFQNIRLFAGMTLLENL---LVAQHT--------VLNAAsgytigGLLGLAs 162
Cdd:COG3839 74 ------------DR----------NIAMVFQSYALYPHMTVYENIafpLKLRKVpkaeidrrVREAA------ELLGLE- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 163 fkraeaaaidkaaywlreiGLVDRaddPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:COG3839 125 -------------------DLLDR---KPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRR 182
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 243 HALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP--RVIAAYLGVP 295
Cdd:COG3839 183 LGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDRPanLFVAGFIGSP 237
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
13-284 |
8.20e-19 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 86.38 E-value: 8.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQ 92
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI----------------TINNIN 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKANGAGAVFLlermpGFEIarlarvarTFQNIRLFAGMTLLENLLVAQHTVLNAASgytigglLGLASFKRAEAAAID 172
Cdd:PRK09700 69 YNKLDHKLAAQL-----GIGI--------IYQELSVIDELTVLENLYIGRHLTKKVCG-------VNIIDWREMRVRAAM 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEH 252
Cdd:PRK09700 129 M----LLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISH 203
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:PRK09700 204 KLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
13-293 |
2.43e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 84.98 E-value: 2.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkptegrialAHGS---EAAFEALPAaTFR 89
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY---------PHGTyegEIIFEGEEL-QAS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANGagavfllermpgfeiarlarVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgYTIGGLLGLASFKRAEAA 169
Cdd:PRK13549 75 NIRDTERAG--------------------IAIIHQELALVKELSVLENIFLGNE--------ITPGGIMDYDAMYLRAQK 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPREShelnALLLKIREE---HALS 246
Cdd:PRK13549 127 -------LLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET----AVLLDIIRDlkaHGIA 195
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEgTPDEIRADPRVIAAYLG 293
Cdd:PRK13549 196 CIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAGMTEDDIITMMVG 241
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
9-293 |
2.58e-18 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 84.00 E-value: 2.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatf 88
Cdd:PRK11432 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI---------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANgagavfLLERmpgfeiarlaRVARTFQNIRLFAGMTLLENLlvaqhtvlnaasGYtigGL--LGLASFKRA 166
Cdd:PRK11432 66 DGEDVTHRS------IQQR----------DICMVFQSYALFPHMSLGENV------------GY---GLkmLGVPKEERK 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAAIDKAAYWLreIGLVDR-ADDPAGdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGL--NPREShelnaLLLKIRE-E 242
Cdd:PRK11432 115 QRVKEALELVDL--AGFEDRyVDQISG----GQQQRVALARALILKPKVLLFDEPLSNLdaNLRRS-----MREKIRElQ 183
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 243 HALSI--LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP--RVIAAYLG 293
Cdd:PRK11432 184 QQFNItsLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPasRFMASFMG 238
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
13-295 |
3.66e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 82.37 E-value: 3.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGL--VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafealpaatfrg 90
Cdd:PRK13635 5 IIRVEHISFRYPDAatYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG---------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 kqwtkangagavFLLERMPGFEIARlaRVARTFQNI-RLFAGMTL-------LENLLVAQHTVLnaasgytiggllglas 162
Cdd:PRK13635 69 ------------MVLSEETVWDVRR--QVGMVFQNPdNQFVGATVqddvafgLENIGVPREEMV---------------- 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 163 fKRAEAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:PRK13635 119 -ERVDQA--------LRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 503183841 243 HALSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEI-RADPRVIAAYLGVP 295
Cdd:PRK13635 190 KGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIfKSGHMLQEIGLDVP 242
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
9-299 |
3.77e-18 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 82.51 E-value: 3.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI----------------LF 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGkqwtkangagavfllERMPGFEIARL----ARVARTFQNIRLFAGMTLLENLL--VAQHTVLNAAsgytiggLLGLAS 162
Cdd:PRK11831 67 DG---------------ENIPAMSRSRLytvrKRMSMLFQSGALFTDMNVFDNVAypLREHTQLPAP-------LLHSTV 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 163 FKRaeaaaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPREShelnALLLKIREE 242
Cdd:PRK11831 125 MMK------------LEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM----GVLVKLISE 188
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503183841 243 --HALSI--LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA--DPRVIAAYLGVPDDEV 299
Cdd:PRK11831 189 lnSALGVtcVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAnpDPRVRQFLDGIADGPV 251
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
11-284 |
4.46e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.47 E-value: 4.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRF-----GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALPA 85
Cdd:TIGR03269 277 EPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 ATFRGKqwtkangagavflLERMPGFeiarlarvarTFQNIRLFAGMTLLENLLVAqhtvlnaasgytIGGLL--GLASF 163
Cdd:TIGR03269 357 PDGRGR-------------AKRYIGI----------LHQEYDLYPHRTVLDNLTEA------------IGLELpdELARM 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 KraeaaaidkAAYWLREIGLVDRA-----DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLK 238
Cdd:TIGR03269 402 K---------AVITLKMVGFDEEKaeeilDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 503183841 239 IREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:TIGR03269 473 AREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
17-271 |
6.60e-18 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 80.53 E-value: 6.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 17 ENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafeALPAATFRGKqwtk 95
Cdd:cd03292 4 INVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN--------GQDVSDLRGR---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 96 angagAVFLLERMPGFeiarlarvarTFQNIRLFAGMTLLENllVAQHTVLNAASGYTIGgllglasfKRAEAAaidkaa 175
Cdd:cd03292 72 -----AIPYLRRKIGV----------VFQDFRLLPDRNVYEN--VAFALEVTGVPPREIR--------KRVPAA------ 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 176 ywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEHDMG 255
Cdd:cd03292 121 --LELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-TVVVATHAKE 197
|
250
....*....|....*.
gi 503183841 256 VVMQISDRIAVLDYGK 271
Cdd:cd03292 198 LVDTTRHRVIALERGK 213
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
28-285 |
6.68e-18 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 80.88 E-value: 6.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKP----TEGRIALAhgseaafealpaatfrgkqwtkangaGAVF 103
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLD--------------------------GRPL 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 104 LLERMPGFEIARLARVARTFQNIRLFAGMTLLENLLVAQHTVLNAasgytiggllglasFKRAEAAaidkaaywLREIGL 183
Cdd:TIGR02770 55 LPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQA--------------RALILEA--------LEAVGL 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 184 VDRA---DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQI 260
Cdd:TIGR02770 113 PDPEevlKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARI 192
|
250 260
....*....|....*....|....*
gi 503183841 261 SDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:TIGR02770 193 ADEVAVMDDGRIVERGTVKEIFYNP 217
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
16-306 |
9.02e-18 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 82.44 E-value: 9.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQWTK 95
Cdd:PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI----------------RFHGTDVSR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 96 ANgagavfllermpgfeiARLARVARTFQNIRLFAGMTLLENLlvaqhtvlnaASGYTIggllgLASFKRAEAAAIDKAA 175
Cdd:PRK10851 69 LH----------------ARDRKVGFVFQHYALFRHMTVFDNI----------AFGLTV-----LPRRERPNAAAIKAKV 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 176 YWLRE-IGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDM 254
Cdd:PRK10851 118 TQLLEmVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 503183841 255 GVVMQISDRIAVLDYGKKIAEGTPDEIRADP--RVIAAYLGvpddEVEGVGAEV 306
Cdd:PRK10851 198 EEAMEVADRVVVMSQGNIEQAGTPDQVWREPatRFVLEFMG----EVNRLQGTI 247
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
16-278 |
1.15e-17 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 83.52 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRF--GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQw 93
Cdd:TIGR01257 931 VKNLVKIFepSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG----------------GKD- 993
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpgfeiarlarVARTFQNIRLFAGM-----TLLENLLVAQHtvlnaasgytiggLLGLASFK-RAE 167
Cdd:TIGR01257 994 -------------------------IETNLDAVRQSLGMcpqhnILFHHLTVAEH-------------ILFYAQLKgRSW 1035
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 AAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREehALSI 247
Cdd:TIGR01257 1036 EEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS--GRTI 1113
|
250 260 270
....*....|....*....|....*....|.
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTP 278
Cdd:TIGR01257 1114 IMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
5-286 |
1.27e-17 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 80.47 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 5 ASDATRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNC-------VTGFYkpTEGRIalahgse 77
Cdd:COG1117 3 APASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRClnrmndlIPGAR--VEGEI------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 78 aafealpaaTFRGKQwtkangagavfLLErmPGFEIARL-ARVARTFQNIRLFAgMTLLENLlvaqhtvlnaASGYTIGG 156
Cdd:COG1117 74 ---------LLDGED-----------IYD--PDVDVVELrRRVGMVFQKPNPFP-KSIYDNV----------AYGLRLHG 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 157 LLGlasfKRAeaaaidkaaywLREI--------GL---V-DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGL 224
Cdd:COG1117 121 IKS----KSE-----------LDEIveeslrkaALwdeVkDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 185
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503183841 225 NPRESHELNALLLKIREEHalSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG1117 186 DPISTAKIEELILELKKDY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPK 245
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
13-273 |
1.98e-17 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 82.14 E-value: 1.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkPT---EGRIaLAHGSEAAFEALPAATFR 89
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHgsyEGEI-LFDGEVCRFKDIRDSEAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GkqwtkangagavfllermpgfeiarlarVARTFQNIRLFAGMTLLENLL----VAQHTVLNAAsgytiggllglASFKR 165
Cdd:NF040905 79 G----------------------------IVIIHQELALIPYLSIAENIFlgneRAKRGVIDWN-----------ETNRR 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAL 245
Cdd:NF040905 120 AREL--------LAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGIT 191
|
250 260
....*....|....*....|....*...
gi 503183841 246 SIlLIEHDMGVVMQISDRIAVLDYGKKI 273
Cdd:NF040905 192 SI-IISHKLNEIRRVADSITVLRDGRTI 218
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
5-285 |
4.29e-17 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 80.76 E-value: 4.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 5 ASDATRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAfeALP 84
Cdd:PRK09452 6 KQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD-GQDIT--HVP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 85 AatfrgkqwtkangagavfllERMPgfeiarlarVARTFQNIRLFAGMTLLENllVAqhtvlnaasgytigglLGLASFK 164
Cdd:PRK09452 83 A--------------------ENRH---------VNTVFQSYALFPHMTVFEN--VA----------------FGLRMQK 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 165 RAEAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPaaglnpresheLNALLLKIREE-- 242
Cdd:PRK09452 116 TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES-----------LSALDYKLRKQmq 184
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 503183841 243 -------HALSILLI--EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK09452 185 nelkalqRKLGITFVfvTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
11-75 |
5.04e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 81.26 E-value: 5.04e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHG 75
Cdd:COG0488 313 KKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGET 377
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
14-281 |
9.83e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 78.55 E-value: 9.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLT------MRFGGlVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAFEALPAAT 87
Cdd:PRK13637 3 IKIENLThiymegTPFEK-KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVKLSD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 88 FRGKqwtkangAGAVF------LLERMPGFEIArlarvartfqnirlFAgmtlLENLLVAQHTVLNaasgytiggllgla 161
Cdd:PRK13637 81 IRKK-------VGLVFqypeyqLFEETIEKDIA--------------FG----PINLGLSEEEIEN-------------- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 162 SFKRAeaaaidkaaywLREIGLV--DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKI 239
Cdd:PRK13637 122 RVKRA-----------MNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 240 REEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:PRK13637 191 HKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
7-295 |
1.88e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 77.72 E-value: 1.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 7 DATRDDLLRVENLTMRFGGLV--AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFEALP 84
Cdd:PRK13632 1 IKNKSVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-DGITISKENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 85 AAtfRGKqwtkangagavfllermpgfeiarlarVARTFQNI-RLFAGMTL-------LENLLVA----QHTVLNAAsgy 152
Cdd:PRK13632 80 EI--RKK---------------------------IGIIFQNPdNQFIGATVeddiafgLENKKVPpkkmKDIIDDLA--- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 153 tiggllglasfkraeaaaidkaaywlREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHEL 232
Cdd:PRK13632 128 --------------------------KKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 233 NALLLKIREEHALSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEIRADPRVIA-AYLGVP 295
Cdd:PRK13632 182 KKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNKEILEkAKIDSP 244
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
15-271 |
2.19e-16 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 76.14 E-value: 2.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGLV-AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQW 93
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI----------------LLNGKPI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAGAVFLLERMPGFEiarlarvartfqnirLFaGMTLLENLlvaqhtvlnaasgytiggLLGLasfKRAEAAAIDK 173
Cdd:cd03226 65 KAKERRKSIGYVMQDVDYQ---------------LF-TDSVREEL------------------LLGL---KELDAGNEQA 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYwLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHD 253
Cdd:cd03226 108 ETV-LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHD 185
|
250
....*....|....*...
gi 503183841 254 MGVVMQISDRIAVLDYGK 271
Cdd:cd03226 186 YEFLAKVCDRVLLLANGA 203
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
7-286 |
2.89e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.96 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 7 DATRDDLLRVENLTMRF-----------GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkPTEGRIalahg 75
Cdd:COG4172 269 PPDAPPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEI----- 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 76 seaafealpaaTFRGKQWTKANGAgavfllERMPgfeiARlARVARTFQ------NIRLFAGMTLLENLLVaQHTVLNAA 149
Cdd:COG4172 343 -----------RFDGQDLDGLSRR------ALRP----LR-RRMQVVFQdpfgslSPRMTVGQIIAEGLRV-HGPGLSAA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 150 SgytiggllglasfkRAEAAAIdkaayWLREIGLvdradDPAGDLPY-----GAQR-RLEIARAMCTDPVLLCLDEPAAG 223
Cdd:COG4172 400 E--------------RRARVAE-----ALEEVGL-----DPAARHRYphefsGGQRqRIAIARALILEPKLLVLDEPTSA 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503183841 224 LNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG4172 456 LDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQ 518
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
13-293 |
4.92e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 78.33 E-value: 4.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkptegrialAHGS---EAAFEALPAATfR 89
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY---------PHGTwdgEIYWSGSPLKA-S 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQWTKANGagavfllermpgfeiarlarVARTFQNIRLFAGMTLLENLLVAQHTVLNaasgytiGGLLGLASFKRAEAA 169
Cdd:TIGR02633 71 NIRDTERAG--------------------IVIIHQELTLVPELSVAENIFLGNEITLP-------GGRMAYNAMYLRAKN 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AidkaaywLREIGLVDRADD-PAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPREShelNALLLKIRE--EHALS 246
Cdd:TIGR02633 124 L-------LRELQLDADNVTrPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET---EILLDIIRDlkAHGVA 193
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEgTPDEIRADPRVIAAYLG 293
Cdd:TIGR02633 194 CVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSEDDIITMMVG 239
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
8-282 |
4.96e-16 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 75.55 E-value: 4.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 8 ATRDDLLRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEaaFEAL 83
Cdd:COG4181 3 SSSAPIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLA-GQD--LFAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 84 ---PAATFRGkqwtkangagavfllermpgfeiarlARVARTFQNIRLFAGMTLLENLLVAqhtvlnaasgytigglLGL 160
Cdd:COG4181 80 dedARARLRA--------------------------RHVGFVFQSFQLLPTLTALENVMLP----------------LEL 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 161 ASFKRAEAAAIDkaayWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIR 240
Cdd:COG4181 118 AGRRDARARARA----LLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELN 193
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 241 EEHALSILLIEHDMGVVMQiSDRIAVLDYGkKIAEGTPDEIR 282
Cdd:COG4181 194 RERGTTLVLVTHDPALAAR-CDRVLRLRAG-RLVEDTAATAA 233
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-286 |
7.94e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 75.90 E-value: 7.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 18 NLTMRFGGLVAVDKLS--FTARRgdITAIIGPNGAGKTTFFNCVTGFYKPTEG-RIA--LAHGSEAAFEALPAATFRgkq 92
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSmgFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGyRYSgdVLLGGRSIFNYRDVLEFR--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpgfeiarlARVARTFQNIRLFAgMTLLENLLvaqhtvlnaaSGYTIGGLLGLASFKRAEAAAid 172
Cdd:PRK14271 101 ------------------------RRVGMLFQRPNPFP-MSIMDNVL----------AGVRAHKLVPRKEFRGVAQAR-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywLREIGLVDRADDPAGDLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhaLSIL 248
Cdd:PRK14271 144 -----LTEVGLWDAVKDRLSDSPFrlsgGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVI 216
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK14271 217 IVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPK 254
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
27-281 |
1.14e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 75.51 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 27 VAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALpaatfrgkqWTKANGAGAVFlle 106
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL---------WDIRNKAGMVF--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 107 rmpgfeiarlarvartfQNIrlfagmtllENLLVAQHTVLNAASGYTIGGLLGLASFKRAEaaaidkaaYWLREIGLVDR 186
Cdd:PRK13633 92 -----------------QNP---------DNQIVATIVEEDVAFGPENLGIPPEEIRERVD--------ESLKKVGMYEY 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 187 ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQiSDRIAV 266
Cdd:PRK13633 138 RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIV 216
|
250
....*....|....*
gi 503183841 267 LDYGKKIAEGTPDEI 281
Cdd:PRK13633 217 MDSGKVVMEGTPKEI 231
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
12-292 |
1.43e-15 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 74.73 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 12 DLLRVENLTMRF----------------------GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGR 69
Cdd:COG1134 3 SMIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 70 IaLAHGSEAAfealpaatfrgkqwtkangagavfLLERMPGFEiarlarvartfqnirlfAGMTLLENLlvaqhtvlnaa 149
Cdd:COG1134 83 V-EVNGRVSA------------------------LLELGAGFH-----------------PELTGRENI----------- 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 150 sgYTIGGLLGLAsfkraeaaaidkaaywLREI-GLVDRADDPAG-----DLP---Y--GAQRRLEIARAMCTDP-VLLcL 217
Cdd:COG1134 110 --YLNGRLLGLS----------------RKEIdEKFDEIVEFAElgdfiDQPvktYssGMRARLAFAVATAVDPdILL-V 170
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 218 DEP-AAGlNPRESHELNALLLKIREEHAlSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEiradprVIAAYL 292
Cdd:COG1134 171 DEVlAVG-DAAFQKKCLARIRELRESGR-TVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEE------VIAAYE 238
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
14-281 |
4.49e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 73.51 E-value: 4.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalAHGSEaafealPAATFRGKQW 93
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV--FLGDK------PISMLSSRQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKangagavfllermpgfeiaRLArvartfqnirlfagmtllenLLVAQHTVlnaASGYTIGGLLG------LASFKRAE 167
Cdd:PRK11231 75 AR-------------------RLA--------------------LLPQHHLT---PEGITVRELVAygrspwLSLWGRLS 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 AAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSI 247
Cdd:PRK11231 113 AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTV 191
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:PRK11231 192 VTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
17-295 |
4.54e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 73.08 E-value: 4.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 17 ENLTMRFgglvavdklSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTKA 96
Cdd:PRK10771 12 HHLPMRF---------DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN----------------GQDHTTT 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 97 NGAgavflleRMPgfeiarlarVARTFQNIRLFAGMTLLENllvaqhtvlnaasgytIGglLGLASFKRAEAAAIDKAAY 176
Cdd:PRK10771 67 PPS-------RRP---------VSMLFQENNLFSHLTVAQN----------------IG--LGLNPGLKLNAAQREKLHA 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 177 WLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTD-PVLLcLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMG 255
Cdd:PRK10771 113 IARQMGIEDLLARLPGQLSGGQRQRVALARCLVREqPILL-LDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 256 VVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAYLGVP 295
Cdd:PRK10771 192 DAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIK 231
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-276 |
6.34e-15 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 72.33 E-value: 6.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 31 KLSFTARrGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkqwtkangaGAVFLLERMPG 110
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLN--------------------------GTVLFDSRKKI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 111 FEIARLARVARTFQNIRLFAGMTLLENLLVaqhtvlnaasgytigGLLGLASFKRAEAAAIDKAAYWLREigLVDRaddP 190
Cdd:cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAF---------------GLKRKRNREDRISVDELLDLLGLDH--LLNR---Y 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 191 AGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYG 270
Cdd:cd03297 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208
|
....*.
gi 503183841 271 KKIAEG 276
Cdd:cd03297 209 RLQYIG 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
13-286 |
8.03e-15 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 74.72 E-value: 8.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTtffncVTgfykptegriALA------------HGS 76
Cdd:COG4172 6 LLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKS-----VT----------ALSilrllpdpaahpSGS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 77 eaafealpaATFRGKQWTKANGAGavflLERMPGfeiarlARVARTFQNirlfaGMTLLeNLLvaqHTVlnaasGYTIG- 155
Cdd:COG4172 71 ---------ILFDGQDLLGLSERE----LRRIRG------NRIAMIFQE-----PMTSL-NPL---HTI-----GKQIAe 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 156 ------GLLGLASFKRAEAaaidkaayWLREIGLVDrADDPAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLN 225
Cdd:COG4172 118 vlrlhrGLSGAAARARALE--------LLERVGIPD-PERRLDAYPHqlsGGQRqRVMIAMALANEPDLLIADEPTTALD 188
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503183841 226 PRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:COG4172 189 VTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFAAPQ 249
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
28-281 |
8.38e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 72.86 E-value: 8.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGKQWTKANgagavfller 107
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI----------------FYNNQAITDDN---------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 mpgfeiarlarvartFQNIRLFAGMTLL--ENLLVAQHTVLNAAsgytigglLGLASFKRAEAAAIDKAAYWLREIGLVD 185
Cdd:PRK13648 78 ---------------FEKLRKHIGIVFQnpDNQFVGSIVKYDVA--------FGLENHAVPYDEMHRRVSEALKQVDMLE 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 186 RADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQiSDRIA 265
Cdd:PRK13648 135 RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVI 213
|
250
....*....|....*.
gi 503183841 266 VLDYGKKIAEGTPDEI 281
Cdd:PRK13648 214 VMNKGTVYKEGTPTEI 229
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
197-296 |
1.18e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 72.89 E-value: 1.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEG 276
Cdd:PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
|
90 100
....*....|....*....|.
gi 503183841 277 TPDEIRADPRVIAAY-LGVPD 296
Cdd:PRK13646 229 SPKELFKDKKKLADWhIGLPE 249
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
13-283 |
1.30e-14 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 73.98 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgSEAAFEALPAATFRg 90
Cdd:TIGR02203 330 DVEFRNVTFRYPGrdRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL---DGHDLADYTLASLR- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 kqwtkangagavfllermpgfeiarlARVARTFQNIRLFAGmTLLENLlvaqhtvlnaasGYTIGGLLGLASFKRAEAAA 170
Cdd:TIGR02203 406 --------------------------RQVALVSQDVVLFND-TIANNI------------AYGRTEQADRAEIERALAAA 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 idkaayWLREigLVDRADD----PAGD---LPYGAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE 242
Cdd:TIGR02203 447 ------YAQD--FVDKLPLgldtPIGEngvLLSGGQRqRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 503183841 243 HalSILLIEHDMGVVmQISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:TIGR02203 519 R--TTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLA 556
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
14-271 |
1.52e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 70.32 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVA--VDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafeaLPAATFRGK 91
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG--------ADISQWDPN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QWtkangagavfllermpGFEIARLArvartfQNIRLFAGmTLLENLLvaqhtvlnaaSGytiggllglasfkraeaaai 171
Cdd:cd03246 73 EL----------------GDHVGYLP------QDDELFSG-SIAENIL----------SG-------------------- 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 dkaaywlreiglvdraddpagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIE 251
Cdd:cd03246 100 -------------------------GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA-TRIVIA 153
|
250 260
....*....|....*....|
gi 503183841 252 HDMGVVmQISDRIAVLDYGK 271
Cdd:cd03246 154 HRPETL-ASADRILVLEDGR 172
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-285 |
1.63e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 71.99 E-value: 1.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKpTEGRIALahgsEAAFEalpaatFRGKQw 93
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRV----EGRVE------FFNQN- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfLLERMpgFEIARLAR-VARTFQNIRLFAgMTLLENLlvaqhtvlnaASGYTIGGLLGLASFKRAEAAAID 172
Cdd:PRK14258 76 ----------IYERR--VNLNRLRRqVSMVHPKPNLFP-MSVYDNV----------AYGVKIVGWRPKLEIDDIVESALK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KAAYWlREIGlvDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEH 252
Cdd:PRK14258 133 DADLW-DEIK--HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 253 DMGVVMQISDRIAVLD-----YGKKIAEGTPDEIRADP 285
Cdd:PRK14258 210 NLHQVSRLSDFTAFFKgnenrIGQLVEFGLTKKIFNSP 247
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
17-283 |
2.00e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 73.62 E-value: 2.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 17 ENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRialahgseaafealpaATFRGKQwTKA 96
Cdd:NF033858 270 RGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGE----------------AWLFGQP-VDA 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 97 NGagavfllermpgfeIARLARVARTFQNIRLFAGMTLLENLlvaqhtVLNAAsgytiggLLGLASFKRAEAAAIDkaay 176
Cdd:NF033858 333 GD--------------IATRRRVGYMSQAFSLYGELTVRQNL------ELHAR-------LFHLPAAEIAARVAEM---- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 177 wLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGV 256
Cdd:NF033858 382 -LERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMNE 460
|
250 260
....*....|....*....|....*..
gi 503183841 257 VMQiSDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:NF033858 461 AER-CDRISLMHAGRVLASDTPAALVA 486
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
28-295 |
2.06e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 72.07 E-value: 2.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafEALPAATFRGKQWTKA-NGAGAVFLLE 106
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG-------DIVVSSTSKQKEIKPVrKKVGVVFQFP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 107 RMPGFEIARLARVARTFQNIrlfaGMTLLENLLVAQHTVlnaasgytigGLLGLASfkraeaaaidkaAYWlreiglvdr 186
Cdd:PRK13643 94 ESQLFEETVLKDVAFGPQNF----GIPKEKAEKIAAEKL----------EMVGLAD------------EFW--------- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 187 aDDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDMGVVMQISDRIAV 266
Cdd:PRK13643 139 -EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYL 216
|
250 260 270
....*....|....*....|....*....|
gi 503183841 267 LDYGKKIAEGTPDEIRADPRVIAAY-LGVP 295
Cdd:PRK13643 217 LEKGHIISCGTPSDVFQEVDFLKAHeLGVP 246
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
14-301 |
4.21e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 70.79 E-value: 4.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGKQw 93
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL----------------DGEH- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavflLERMPGFEIARlaRVARTFQNIRLFAGMTLLEnlLVAQ----HTVLnaasgytiggllglasFKRAEAA 169
Cdd:PRK10253 71 -----------IQHYASKEVAR--RIGLLAQNATTPGDITVQE--LVARgrypHQPL----------------FTRWRKE 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:PRK10253 120 DEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIrADPRVIAAYLG----VPDDEVEG 301
Cdd:PRK10253 200 VLHDLNQACRYASHLIALREGKIVAQGAPKEI-VTAELIERIYGlrcmIIDDPVAG 254
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
15-281 |
4.52e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 70.50 E-value: 4.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 15 RVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQwt 94
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVD----------------GLD-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 kangagavflLERMPGFEIARlaRVARTFQ----NIRLfagmTLLEnlLVA--------------QHTVLNAASGYtigg 156
Cdd:COG4604 65 ----------VATTPSRELAK--RLAILRQenhiNSRL----TVRE--LVAfgrfpyskgrltaeDREIIDEAIAY---- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 157 lLGLASFKraeaaaidkaaywlreiglvDRaddpagdlpY-----GAQR-RLEIARAMC--TDPVLlcLDEPAAGLNPRE 228
Cdd:COG4604 123 -LDLEDLA--------------------DR---------YldelsGGQRqRAFIAMVLAqdTDYVL--LDEPLNNLDMKH 170
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 503183841 229 SHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:COG4604 171 SVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
28-308 |
6.58e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 70.89 E-value: 6.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALA----HGSEAAFealpAATFrgkqwtkangaGAVF 103
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLgyvpFKRRKEF----ARRI-----------GVVF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 104 -----LLERMP---GFEIarLARV----ARTF-QNIRLFAGMtlLEnllvaqhtvlnaasgytIGGLLglasfkraeaaa 170
Cdd:COG4586 102 gqrsqLWWDLPaidSFRL--LKAIyripDAEYkKRLDELVEL--LD-----------------LGELL------------ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 idkaaywlreiglvdraDDPAGDLPYGaQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILL 249
Cdd:COG4586 149 -----------------DTPVRQLSLG-QRmRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILL 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 250 IEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIR---ADPRVIAAYL--GVPDDEVEGvGAEVES 308
Cdd:COG4586 211 TSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKerfGPYKTIVLELaePVPPLELPR-GGEVIE 273
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
28-286 |
9.43e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 70.38 E-value: 9.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTKANGAgAVFLLER 107
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQ----------------GQDLLKADPE-AQKLLRQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 mpgfeiarlaRVARTFQ------NIRLFAGMTLLENLLVaqHTVLNAASgytiggllglasfKRAEAAAIdkaaywLREI 181
Cdd:PRK11308 93 ----------KIQIVFQnpygslNPRKKVGQILEEPLLI--NTSLSAAE-------------RREKALAM------MAKV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 182 GLvdRADDpAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPR-ESHELNaLLLKIREEHALSILLIEHDMGV 256
Cdd:PRK11308 142 GL--RPEH-YDRYPHmfsGGQRqRIAIARALMLDPDVVVADEPVSALDVSvQAQVLN-LMMDLQQELGLSYVFISHDLSV 217
|
250 260 270
....*....|....*....|....*....|
gi 503183841 257 VMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK11308 218 VEHIADEVMVMYLGRCVEKGTKEQIFNNPR 247
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
14-280 |
1.58e-13 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 70.58 E-value: 1.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAV-DKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkq 92
Cdd:COG1132 340 IEFENVSFSYPGDRPVlKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILID------------------- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpGFEIARL------ARVARTFQNIRLFAGmTLLENLLVAQHT-----VLNAASgytiggllgLA 161
Cdd:COG1132 401 -----------------GVDIRDLtleslrRQIGVVPQDTFLFSG-TIRENIRYGRPDatdeeVEEAAK---------AA 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 162 sfkraeaaaidkaaywlreiglvdRADDPAGDLPYG--------------AQR-RLEIARAMCTDPVLLCLDEPAAGLNP 226
Cdd:COG1132 454 ------------------------QAHEFIEALPDGydtvvgergvnlsgGQRqRIAIARALLKDPPILILDEATSALDT 509
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 503183841 227 RESHELNALLLKIREEHalSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDE 280
Cdd:COG1132 510 ETEALIQEALERLMKGR--TTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEE 560
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
6-299 |
1.68e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 71.20 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 6 SDATRDDLLRVENLTMRFGGLV--AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRialahgseaafeal 83
Cdd:TIGR01257 1930 SGGNKTDILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD-------------- 1995
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 84 paATFRGKqwtkangagavfllermpgfeiARLARVARTFQNIRLFAGMTLLENLLVAQHTVlnaasgYTIGGLLGLASf 163
Cdd:TIGR01257 1996 --ATVAGK----------------------SILTNISDVHQNMGYCPQFDAIDDLLTGREHL------YLYARLRGVPA- 2044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 kraeAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHEL-NALLLKIREE 242
Cdd:TIGR01257 2045 ----EEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLwNTIVSIIREG 2120
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 243 HAlsILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA---DPRVIAAYLGVPDDEV 299
Cdd:TIGR01257 2121 RA--VVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSkfgDGYIVTMKIKSPKDDL 2178
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
14-291 |
1.77e-13 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 70.26 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgsEAAFEALPAATFRGKQW 93
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA---GDDVEALSARAASRRVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAGAVFllermpGFEIARLARVARTFQNIRlFAGMTLLENLLVAQhtVLNAAsgytiggllGLASFkraeaaaidk 173
Cdd:PRK09536 81 SVPQDTSLSF------EFDVRQVVEMGRTPHRSR-FDTWTETDRAAVER--AMERT---------GVAQF---------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywlreiglvdrADDPAGDLPYGAQRRLEIARAMCTD-PVLLcLDEPAAGLNPRESHELNALLLKIREEHALSILLIeH 252
Cdd:PRK09536 133 -------------ADRPVTSLSGGERQRVLLARALAQAtPVLL-LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-H 197
|
250 260 270
....*....|....*....|....*....|....*....
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPRVIAAY 291
Cdd:PRK09536 198 DLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
28-281 |
2.66e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 68.88 E-value: 2.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafEALPAATFRGKqwtkangagavfller 107
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGD------YAIPANLKKIK---------------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 mpgfEIARLAR-VARTFQ--NIRLFAGMTLLENLLVAQHTVLNAASGYT-IGGLLGLASFKRaeaaaidkaaywlreigl 183
Cdd:PRK13645 84 ----EVKRLRKeIGLVFQfpEYQLFQETIEKDIAFGPVNLGENKQEAYKkVPELLKLVQLPE------------------ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 184 vDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDR 263
Cdd:PRK13645 142 -DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 220
|
250
....*....|....*...
gi 503183841 264 IAVLDYGKKIAEGTPDEI 281
Cdd:PRK13645 221 VIVMHEGKVISIGSPFEI 238
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
25-292 |
2.95e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 69.87 E-value: 2.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 25 GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkPTEGRIaLAHGSEaaFEALPAATFRGKqwtkangagavfl 104
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL-KINGIE--LRELDPESWRKH------------- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 105 lermpgfeiarLARVArtfQNIRLFAGmTLLENLLVAQHtvlnAASGYTIGGLLGLASFKRAEAAAIDKAAYwlrEIGlv 184
Cdd:PRK11174 425 -----------LSWVG---QNPQLPHG-TLRDNVLLGNP----DASDEQLQQALENAWVSEFLPLLPQGLDT---PIG-- 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 185 dradDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPR-ESHELNALLlkiREEHALSILLIEHDMGVVMQIsDR 263
Cdd:PRK11174 481 ----DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHsEQLVMQALN---AASRRQTTLMVTHQLEDLAQW-DQ 552
|
250 260
....*....|....*....|....*....
gi 503183841 264 IAVLDYGKKIAEGTPDEIRADPRVIAAYL 292
Cdd:PRK11174 553 IWVMQDGQIVQQGDYAELSQAGGLFATLL 581
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
28-276 |
3.29e-13 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 67.61 E-value: 3.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAfeALPAATFRgkqwtkangagavfller 107
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIR--QLDPADLR------------------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 mpgfeiarlARVARTFQNIRLFAGmTLLENL-----LVAQHTVLNAASgytiggLLGLASFKRAEAAAIDkaaywlREIG 182
Cdd:cd03245 78 ---------RNIGYVPQDVTLFYG-TLRDNItlgapLADDERILRAAE------LAGVTDFVNKHPNGLD------LQIG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 183 lvDRaddpaGDLPYGAQRRL-EIARAMCTDPVLLCLDEPAAGLNPR-ESHELNALLLKIREEhalSILLIEHDMgVVMQI 260
Cdd:cd03245 136 --ER-----GRGLSGGQRQAvALARALLNDPPILLLDEPTSAMDMNsEERLKERLRQLLGDK---TLIIITHRP-SLLDL 204
|
250
....*....|....*.
gi 503183841 261 SDRIAVLDYGKKIAEG 276
Cdd:cd03245 205 VDRIIVMDSGRIVADG 220
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-290 |
3.39e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 69.69 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 6 SDATRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahGSEAAFEALPA 85
Cdd:PRK15439 4 SDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI--GGNPCARLTPA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 atfrgkqwtKANGAGaVFLLERMPgfeiarlarvartfqniRLFAGMTLLENLLvaqhtvlnaasgytigglLGLASFKR 165
Cdd:PRK15439 82 ---------KAHQLG-IYLVPQEP-----------------LLFPNLSVKENIL------------------FGLPKRQA 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAAAIDKaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPresHELNALLLKIRE--EH 243
Cdd:PRK15439 117 SMQKMKQL----LAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTP---AETERLFSRIREllAQ 189
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 244 ALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADpRVIAA 290
Cdd:PRK15439 190 GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-DIIQA 235
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
13-286 |
3.47e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 69.73 E-value: 3.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF---GGL--------VAVDKLSFTARRGDITAIIGPNGAGKTTffncvTGF----YKPTEGRIAlahgse 77
Cdd:PRK15134 275 LLDVEQLQVAFpirKGIlkrtvdhnVVVKNISFTLRPGETLGLVGESGSGKST-----TGLallrLINSQGEIW------ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 78 aaFEALPAATFRGKQwtkangagavFLLERmpgfeiarlARVARTFQ------NIRLFAGMTLLENLLVaQHTVLNAAsg 151
Cdd:PRK15134 344 --FDGQPLHNLNRRQ----------LLPVR---------HRIQVVFQdpnsslNPRLNVLQIIEEGLRV-HQPTLSAA-- 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 152 ytiggllglasfKRAEAAAIDkaaywLREIGLvdradDPAGDLPY-----GAQR-RLEIARAMCTDPVLLCLDEPAAGLN 225
Cdd:PRK15134 400 ------------QREQQVIAV-----MEEVGL-----DPETRHRYpaefsGGQRqRIAIARALILKPSLIILDEPTSSLD 457
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503183841 226 PRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
32-276 |
4.02e-13 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 67.30 E-value: 4.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTG---FYKPTEGRIALAhGSEAafealpaatfRGKQWTKangagavfllerm 108
Cdd:cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFN-GQPR----------KPDQFQK------------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 109 pgfeiarlaRVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgytigglLGLASFKRAEAAAIDKAAYWLREIGLVDRAD 188
Cdd:cd03234 82 ---------CVAYVRQDDILLPGLTVRETLTYTAI--------------LRLPRKSSDAIRKKRVEDVLLRDLALTRIGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 189 DPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:cd03234 139 NLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS 218
|
....*...
gi 503183841 269 YGKKIAEG 276
Cdd:cd03234 219 SGEIVYSG 226
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
41-285 |
4.41e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 68.75 E-value: 4.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 41 ITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahGSEAAFEAlpaatfrgkqwtkangAGAVFLlermPgfeiARLARVA 120
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVL--NGRVLFDA----------------EKGICL----P----PEKRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 121 RTFQNIRLFAGMTLLENLlvaQHTVLNAASGY--TIGGLLGLASfkraeaaaidkaaywlreigLVDRAddPAgDLPYGA 198
Cdd:PRK11144 80 YVFQDARLFPHYKVRGNL---RYGMAKSMVAQfdKIVALLGIEP--------------------LLDRY--PG-SLSGGE 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 199 QRRLEIARAMCTDPVLLCLDEPAAGLN-PREsHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGT 277
Cdd:PRK11144 134 KQRVAIGRALLTAPELLLMDEPLASLDlPRK-RELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
....*...
gi 503183841 278 PDEIRADP 285
Cdd:PRK11144 213 LEEVWASS 220
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
14-80 |
5.54e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 65.16 E-value: 5.54e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAF 80
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGY 67
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
178-286 |
5.76e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 67.38 E-value: 5.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 178 LREIGL----VDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhaLSILLIEHD 253
Cdd:PRK14246 134 LRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHN 211
|
90 100 110
....*....|....*....|....*....|...
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK14246 212 PQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
14-257 |
5.87e-13 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 66.23 E-value: 5.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALPAatfRGKQW 93
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPH---ENILY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavflLERMPGfeiarlarvartfqnirLFAGMTLLENLlvaqhTVLNAASGYTIGGLLGLasfkraeaaaidk 173
Cdd:TIGR01189 78 -----------LGHLPG-----------------LKPELSALENL-----HFWAAIHGGAQRTIEDA------------- 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLlkirEEHA----LSILL 249
Cdd:TIGR01189 112 ----LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL----RAHLarggIVLLT 183
|
....*...
gi 503183841 250 IEHDMGVV 257
Cdd:TIGR01189 184 THQDLGLV 191
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
28-288 |
6.24e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 67.52 E-value: 6.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPtegrialahgseaafEALPAatfrgkqwTKANGAGAVFLLER 107
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP---------------DDNPN--------SKITVDGITLTAKT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 MpgFEIARlaRVARTFQNI-RLFAGMTL-------LENLLVAQHTVLNAASGYtiggllglasfkraeaaaidkaaywLR 179
Cdd:PRK13640 79 V--WDIRE--KVGIVFQNPdNQFVGATVgddvafgLENRAVPRPEMIKIVRDV-------------------------LA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 180 EIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQ 259
Cdd:PRK13640 130 DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM 209
|
250 260
....*....|....*....|....*....
gi 503183841 260 iSDRIAVLDYGKKIAEGTPDEIRADPRVI 288
Cdd:PRK13640 210 -ADQVLVLDDGKLLAQGSPVEIFSKVEML 237
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
12-291 |
7.02e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 67.06 E-value: 7.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 12 DLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatfrgk 91
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllERMPGFEIArlarvartfqnirlfagmtllenlLVAQHTVLNAASGYTIGGLLGLASFKRAEAAAI 171
Cdd:PRK09544 62 --------------KRNGKLRIG------------------------YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 DkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIE 251
Cdd:PRK09544 104 A-----LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 252 HDMGVVMQISDRIAVLDyGKKIAEGTPDEIRADPRVIAAY 291
Cdd:PRK09544 179 HDLHLVMAKTDEVLCLN-HHICCSGTPEVVSLHPEFISMF 217
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
16-220 |
9.26e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 68.17 E-value: 9.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkqwtk 95
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP---------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 96 angagavfllermPGFEIARLArvartfQNIRLFAGMTLLENL---------LVAQHTVLNAASGYTIGGLLGLAsfkrA 166
Cdd:COG0488 59 -------------KGLRIGYLP------QEPPLDDDLTVLDTVldgdaelraLEAELEELEAKLAEPDEDLERLA----E 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 167 EAAAIDKAAYW-----LREI--GL---VDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEP 220
Cdd:COG0488 116 LQEEFEALGGWeaearAEEIlsGLgfpEEDLDRPVSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
32-271 |
1.06e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 66.34 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGKQwtkangagavfllerMPGF 111
Cdd:cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL----------------DGKP---------------ISQY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 EIARLAR-VARTFQNIRLFAGmTLLENLL-----VAQHTVLNAASGYTIGGLLGLAsfkraeaaaidkaaywlrEIGLVD 185
Cdd:cd03248 82 EHKYLHSkVSLVGQEPVLFAR-SLQDNIAyglqsCSFECVKEAAQKAHAHSFISEL------------------ASGYDT 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 186 RADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHDMGVVMQiSDRIA 265
Cdd:cd03248 143 EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQIL 219
|
....*.
gi 503183841 266 VLDYGK 271
Cdd:cd03248 220 VLDGGR 225
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
14-277 |
1.09e-12 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 66.57 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgkqw 93
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIA-------------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangaGAVFLLERMPGFEIARLAR--VARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytigGLLGLASFKRAEaaai 171
Cdd:COG4161 63 ------GHQFDFSQKPSEKAIRLLRqkVGMVFQQYNLWPHLTVMENLIEAPCKVL---------GLSKEQAREKAM---- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 dkaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPreshELNALLLKI-REEHALSI--L 248
Cdd:COG4161 124 ----KLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQVVEIiRELSQTGItqV 195
|
250 260
....*....|....*....|....*....
gi 503183841 249 LIEHDMGVVMQISDRIAVLDYGKKIAEGT 277
Cdd:COG4161 196 IVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
11-72 |
1.10e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.04 E-value: 1.10e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAL 72
Cdd:TIGR03719 320 DKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI 381
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
13-280 |
1.30e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 67.93 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF--GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAF--EALpaatf 88
Cdd:PRK11160 338 SLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYseAAL----- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 rgkqwtkangagavfllermpgfeiarlaRVARTF--QNIRLFAGmTLLENLLVAQHTVLNAAsgytiggLLGLasfkra 166
Cdd:PRK11160 413 -----------------------------RQAISVvsQRVHLFSA-TLRDNLLLAAPNASDEA-------LIEV------ 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 eaaaidkaaywLREIGLVDRADDPAG----------DLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALL 236
Cdd:PRK11160 450 -----------LQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 503183841 237 LkireEHAL--SILLIEHDMgVVMQISDRIAVLDYGKKIAEGTPDE 280
Cdd:PRK11160 519 A----EHAQnkTVLMITHRL-TGLEQFDRICVMDNGQIIEQGTHQE 559
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
13-271 |
1.40e-12 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 65.67 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTFRGK 91
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI----------------WFSGH 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QwtkangagavflLERMPGFEIARLAR-VARTFQNIRLFAGMTLLENllVAQHTVLNAASGYTIGGLLGLAsfkraeaaa 170
Cdd:PRK10908 65 D------------ITRLKNREVPFLRRqIGMIFQDHHLLMDRTVYDN--VAIPLIIAGASGDDIRRRVSAA--------- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 idkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNpresHELNALLLKIREEH---ALSI 247
Cdd:PRK10908 122 -------LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLFEEFnrvGVTV 190
|
250 260
....*....|....*....|....
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGK 271
Cdd:PRK10908 191 LMATHDIGLISRRSYRMLTLSDGH 214
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
13-271 |
1.54e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 64.76 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRfgglVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAFEALpaatfrgkq 92
Cdd:cd03215 4 VLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD-GKPVTRRSP--------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wTKANGAGAVFLLERmpgfeiaRLARVartfqnirLFAGMTLLENLLVAQHtvLnaaSGytiggllglasfkraeaaaid 172
Cdd:cd03215 70 -RDAIRAGIAYVPED-------RKREG--------LVLDLSVAENIALSSL--L---SG--------------------- 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywlreiglvdraddpagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEH 252
Cdd:cd03215 108 ------------------------GNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISS 162
|
250
....*....|....*....
gi 503183841 253 DMGVVMQISDRIAVLDYGK 271
Cdd:cd03215 163 ELDELLGLCDRILVMYEGR 181
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
11-295 |
1.59e-12 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 66.35 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgSEAAFEALPAATFRG 90
Cdd:PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL---DAQPLESWSSKAFAR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 KqwtkangagAVFLLERMPGFEiarlarvartfqnirlfaGMTLLEnllvaqhtvLNAASGYTIGGLLGlasfkRAEAAA 170
Cdd:PRK10575 86 K---------VAYLPQQLPAAE------------------GMTVRE---------LVAIGRYPWHGALG-----RFGAAD 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLI 250
Cdd:PRK10575 125 REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPDEIrADPRVIAAYLGVP 295
Cdd:PRK10575 205 LHDINMAARYCDYLVALRGGEMIAQGTPAEL-MRGETLEQIYGIP 248
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
13-277 |
1.60e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 66.19 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFY---KPTEGRIALAhGSEAAFEALPAATFR 89
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELL-GRTVQREGRLARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQwtkangagavfllermpgfeiarlARVARTFQNIRLFAGMTLLENLLVaqhtvlnaasgytigGLLGLASFKRA--- 166
Cdd:PRK09984 83 KSR------------------------ANTGYIFQQFNLVNRLSVLENVLI---------------GALGSTPFWRTcfs 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 --EAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHA 244
Cdd:PRK09984 124 wfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203
|
250 260 270
....*....|....*....|....*....|...
gi 503183841 245 LSILLIEHDMGVVMQISDRIAVLDYGKKIAEGT 277
Cdd:PRK09984 204 ITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
14-281 |
1.63e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 67.47 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAfealpaatfrgk 91
Cdd:COG4618 331 LSVENLTVVPPGskRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRL-DGADLS------------ 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 QWTKANgagavflLERMPGFeiarLArvartfQNIRLFAGmTLLENL----------------LVAQH-TVLNAASGY-T 153
Cdd:COG4618 398 QWDREE-------LGRHIGY----LP------QDVELFDG-TIAENIarfgdadpekvvaaakLAGVHeMILRLPDGYdT 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 154 iggllglasfkraeaaaidkaaywlrEIGlvdraddPAGDLPYGAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHEL 232
Cdd:COG4618 460 --------------------------RIG-------EGGARLSGGQRqRIGLARALYGDPRLVVLDEPNSNLDDEGEAAL 506
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 503183841 233 NALLLKIREEHAlSILLIEHDMGvVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:COG4618 507 AAAIRALKARGA-TVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
14-279 |
1.80e-12 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 65.81 E-value: 1.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAFEALPaatfrgkqw 93
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA-GNHFDFSKTP--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkanGAGAVFLLERmpgfeiarlaRVARTFQNIRLFAGMTLLENLLVAQHTVLnaasgytigGLLGLASFKRAEAAaidk 173
Cdd:PRK11124 73 ----SDKAIRELRR----------NVGMVFQQYNLWPHLTVQQNLIEAPCRVL---------GLSKDQALARAEKL---- 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPreshELNALLLKIREEHA---LSILLI 250
Cdd:PRK11124 126 ----LERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQIVSIIRELAetgITQVIV 197
|
250 260
....*....|....*....|....*....
gi 503183841 251 EHDMGVVMQISDRIAVLDYGKKIAEGTPD 279
Cdd:PRK11124 198 THEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
197-300 |
1.84e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 66.65 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQ-RRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAE 275
Cdd:PRK15079 164 GGQcQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243
|
90 100 110
....*....|....*....|....*....|
gi 503183841 276 GTPDEIRADP-----RVIAAYLGVPDDEVE 300
Cdd:PRK15079 244 GTYDEVYHNPlhpytKALMSAVPIPDPDLE 273
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
14-276 |
2.52e-12 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 64.26 E-value: 2.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrgk 91
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpGFEIARLARVARTF-----QNIRLFAGmTLLENLlvaqhtvlnaasGYTIGGllglasfkra 166
Cdd:cd03247 63 ------------------GVPVSDLEKALSSLisvlnQRPYLFDT-TLRNNL------------GRRFSG---------- 101
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 eaaaidkaaywlreiglvdraddpagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalS 246
Cdd:cd03247 102 ------------------------------GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK--T 149
|
250 260 270
....*....|....*....|....*....|
gi 503183841 247 ILLIEHDMGVVMQIsDRIAVLDYGKKIAEG 276
Cdd:cd03247 150 LIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
11-293 |
3.46e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 65.20 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRF---GGLV------AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAFe 81
Cdd:PRK15112 2 ETLLEVRNLSKTFryrTGWFrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHF- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 82 alpaatfrgkqwtkangagavfllermpGFEIARLARVARTFQ------NIRLFAGMTLLENLLvaqhtvLNAAsgytig 155
Cdd:PRK15112 80 ----------------------------GDYSYRSQRIRMIFQdpstslNPRQRISQILDFPLR------LNTD------ 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 156 gLLGLASFKRAEAAaidkaaywLREIGLV-DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNA 234
Cdd:PRK15112 120 -LEPEQREKQIIET--------LRQVGLLpDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 235 LLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP------RVIAAYLG 293
Cdd:PRK15112 191 LMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPlheltkRLIAGHFG 255
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
11-283 |
3.73e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.50 E-value: 3.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKL---SFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaat 87
Cdd:PRK13642 2 NKILEVENLVFKYEKESDVNQLngvSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI--------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 88 fRGKQWTKANgagaVFLLERmpgfeiarlaRVARTFQNI-RLFAGMTLLENLlvaqhtvlnaASGYTIGGLLGLASFKRA 166
Cdd:PRK13642 67 -DGELLTAEN----VWNLRR----------KIGMVFQNPdNQFVGATVEDDV----------AFGMENQGIPREEMIKRV 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 167 EAAaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALS 246
Cdd:PRK13642 122 DEA--------LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193
|
250 260 270
....*....|....*....|....*....|....*..
gi 503183841 247 ILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:PRK13642 194 VLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFA 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
14-70 |
3.80e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 66.68 E-value: 3.80e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
11-293 |
4.38e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 66.20 E-value: 4.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMR-FGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgsEAAFEALPAATFR 89
Cdd:COG3845 255 EVVLEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLD---GEDITGLSPRERR 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GkqwtkangAGAVFLLE-RMpgfeiarlaRVArtfqnirLFAGMTLLENLLVAQHTvlnaASGYTIGGLLGLASFKRaea 168
Cdd:COG3845 332 R--------LGVAYIPEdRL---------GRG-------LVPDMSVAENLILGRYR----RPPFSRGGFLDRKAIRA--- 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 aaidkaayWLREigLVDR-------ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIRE 241
Cdd:COG3845 381 --------FAEE--LIEEfdvrtpgPDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRD 450
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 503183841 242 EHAlSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEirADPRVIAAYLG 293
Cdd:COG3845 451 AGA-AVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAE--ATREEIGLLMA 499
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
13-285 |
5.23e-12 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 64.80 E-value: 5.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTgfykptegRIAlahgseaafEALPAATFRGKq 92
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN--------RMN---------DLNPEVTITGS- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wTKANGAGAVfllerMPGFEIARLAR-VARTFQNIRLFAgMTLLENLLVaqhtvlnaasGYTIGGLLGLASFKRAEAAAI 171
Cdd:PRK14239 67 -IVYNGHNIY-----SPRTDTVDLRKeIGMVFQQPNPFP-MSIYENVVY----------GLRLKGIKDKQVLDEAVEKSL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 DKAAYWlREIGlvDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIE 251
Cdd:PRK14239 130 KGASIW-DEVK--DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVT 204
|
250 260 270
....*....|....*....|....*....|....
gi 503183841 252 HDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK14239 205 RSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
26-284 |
5.81e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 65.11 E-value: 5.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 26 LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaaTFRGKQWTKANGAGAVFLL 105
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW--------------IFKDEKNKKKTKEKEKVLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 106 E---RMPGF-------EIARlaRVARTFQnirlFAGMTLLENllvaqhtvlnaasgyTIGG--LLGLASFKRAEAAAIDK 173
Cdd:PRK13651 86 KlviQKTRFkkikkikEIRR--RVGVVFQ----FAEYQLFEQ---------------TIEKdiIFGPVSMGVSKEEAKKR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 AAYWLREIGL-VDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEH 252
Cdd:PRK13651 145 AAKYIELVGLdESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TIILVTH 223
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:PRK13651 224 DLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
28-276 |
7.92e-12 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 63.71 E-value: 7.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAfealpaatfrgkqwtkangagavfLLER 107
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV-RGRVSS------------------------LLGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 MPGFEiarlarvartfqnirlfAGMTLLENLlvaqhtvlnaasgYTIGGLLGLasfKRAEAAAIDKAAYWLREIGlvDRA 187
Cdd:cd03220 92 GGGFN-----------------PELTGRENI-------------YLNGRLLGL---SRKEIDEKIDEIIEFSELG--DFI 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 188 DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEP-AAGlnprESHELNALLLKIRE--EHALSILLIEHDMGVVMQISDRI 264
Cdd:cd03220 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVlAVG----DAAFQEKCQRRLREllKQGKTVILVSHDPSSIKRLCDRA 212
|
250
....*....|..
gi 503183841 265 AVLDYGKKIAEG 276
Cdd:cd03220 213 LVLEKGKIRFDG 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
13-268 |
1.15e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 63.30 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFG-GLVAVDKL---SFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaaTF 88
Cdd:PRK11629 5 LLQCDNLCKRYQeGSVQTDVLhnvSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV----------------IF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGAGAVFLLERMPGFeiarlarvarTFQNIRLFAGMTLLENllvaqhtvlnAASGYTIGGLLGLASFKRAEA 168
Cdd:PRK11629 69 NGQPMSKLSSAAKAELRNQKLGF----------IYQFHHLLPDFTALEN----------VAMPLLIGKKKPAEINSRALE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AaidkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:PRK11629 129 M--------LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFL 200
|
250 260
....*....|....*....|
gi 503183841 249 LIEHDMGVVMQISDRIAVLD 268
Cdd:PRK11629 201 VVTHDLQLAKRMSRQLEMRD 220
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-298 |
1.15e-11 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 65.04 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 6 SDATRDDLLRVENLTMRfgglVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFEAlPA 85
Cdd:COG1129 249 AAAPGEVVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRL-DGKPVRIRS-PR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 AtfrgkqwtkANGAGAVFLLE--RMPGfeiarlarvartfqnirLFAGMTLLENLlvaqhtVLNAASGYTIGGLLglaSF 163
Cdd:COG1129 323 D---------AIRAGIAYVPEdrKGEG-----------------LVLDLSIRENI------TLASLDRLSRGGLL---DR 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 164 KRAEAAAIDkaayWLREIGL-VDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNP---RESHELnalllkI 239
Cdd:COG1129 368 RRERALAEE----YIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVgakAEIYRL------I 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503183841 240 RE--EHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADpRVIAAYLGVPDDE 298
Cdd:COG1129 438 RElaAEGKAVIVISSELPELLGLSDRILVMREGRIVGELDREEATEE-AIMAAATGGAAAA 497
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
13-294 |
1.34e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 63.85 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALPaatfrgk 91
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQ------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpgfEIARLarVARTFQNIRL-FAGMTLLENLLVAQHTVLnaasgytiggLLGLASFKRAEAAa 170
Cdd:PRK13644 74 --------------------GIRKL--VGIVFQNPETqFVGRTVEEDLAFGPENLC----------LPPIEIRKRVDRA- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 idkaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPrESHElnALLLKIREEH--ALSIL 248
Cdd:PRK13644 121 -------LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP-DSGI--AVLERIKKLHekGKTIV 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 503183841 249 LIEHDMGVvMQISDRIAVLDYGKKIAEGTPDEIRADPRViaAYLGV 294
Cdd:PRK13644 191 YITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSL--QTLGL 233
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
13-283 |
2.01e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 63.10 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI-----ALAHGSEA--AFEALPA 85
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVlwqgkPLDYSKRGllALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 ATFRGKQ----WTKANGAGAVFLleRMPGFEIARLARvartfqniRLFAGMTLLEnllvAQHtvlnaasgytiggllgla 161
Cdd:PRK13638 81 TVFQDPEqqifYTDIDSDIAFSL--RNLGVPEAEITR--------RVDEALTLVD----AQH------------------ 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 162 sFKRaeaaaidkaaywlreiglvdradDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIRE 241
Cdd:PRK13638 129 -FRH-----------------------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 242 EhALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:PRK13638 185 Q-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
13-264 |
2.47e-11 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 62.45 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF-----GG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGseaafealpa 85
Cdd:COG4778 4 LLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHD---------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 atfrgkqwtkangaGAVFLLERMPGFEIARLARvaRTF----QNIRLFAGMTLLEnlLVAQHtvlnaasgytiggllgla 161
Cdd:COG4778 74 --------------GGWVDLAQASPREILALRR--RTIgyvsQFLRVIPRVSALD--VVAEP------------------ 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 162 sfkraeaaaidkaaywLREIGlVDR--ADDPAGDL--------------PY----GAQRRLEIARAMCTDPVLLCLDEPA 221
Cdd:COG4778 118 ----------------LLERG-VDReeARARARELlarlnlperlwdlpPAtfsgGEQQRVNIARGFIADPPLLLLDEPT 180
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 222 AGLNPRESHELNALLLKIREEHAlSILLIEHDMGVVMQISDRI 264
Cdd:COG4778 181 ASLDAANRAVVVELIEEAKARGT-AIIGIFHDEEVREAVADRV 222
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
5-285 |
3.32e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 63.20 E-value: 3.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 5 ASDATRDDLLRVENLTMRFG---GLV-AVDKLSFTARRGDITAIIGPNGAGKT-TFFnCVTGFYKPTeGRIalahGSEAA 79
Cdd:PRK09473 4 LAQQQADALLDVKDLRVTFStpdGDVtAVNDLNFSLRAGETLGIVGESGSGKSqTAF-ALMGLLAAN-GRI----GGSAT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 80 FEALPAATFRGKQwtkangagavflLERMPGFEIARLARVARTFQNIRLFAGMTLLENLLVaqHTVLNAASGytiggllg 159
Cdd:PRK09473 78 FNGREILNLPEKE------------LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML--HKGMSKAEA-------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 160 lasfkraeaaaidkaayWLREIGLVDRADDPA-----GDLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESH 230
Cdd:PRK09473 136 -----------------FEESVRMLDAVKMPEarkrmKMYPHefsgGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQA 198
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 231 ELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK09473 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
185-286 |
4.33e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 62.17 E-value: 4.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 185 DRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhaLSILLIEHDMGVVMQISDRI 264
Cdd:PRK14267 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYV 218
|
90 100
....*....|....*....|..
gi 503183841 265 AVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK14267 219 AFLYLGKLIEVGPTRKVFENPE 240
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-274 |
4.52e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.21 E-value: 4.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 17 ENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAF----EALpaatfrgkq 92
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFksskEAL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkANGagavfllermpgfeiarlarVARTFQNIRLFAGMTLLENLLVAQHTvlnaasgyTIGGLLGLASFKRAEAAAid 172
Cdd:PRK10982 72 ---ENG--------------------ISMVHQELNLVLQRSVMDNMWLGRYP--------TKGMFVDQDKMYRDTKAI-- 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 kaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEH 252
Cdd:PRK10982 119 -----FDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISH 192
|
250 260
....*....|....*....|..
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIA 274
Cdd:PRK10982 193 KMEEIFQLCDEITILRDGQWIA 214
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1-282 |
5.40e-11 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 62.45 E-value: 5.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 1 MADGASDAtrddlLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAgkttffncvtgfykptegriALAHGSEAAF 80
Cdd:NF000106 6 ISNGARNA-----VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GA--------------------A**RGALPAH 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 81 EALPAATFRgkQWTKANGAGAVFLLERMPGFEiaRLARVARTfqniRLFAGMtllENLlvaqhtvlnaasgYTIGGLLGL 160
Cdd:NF000106 61 V*GPDAGRR--PWRF*TWCANRRALRRTIG*H--RPVR*GRR----ESFSGR---ENL-------------YMIGR*LDL 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 161 ASfkraeAAAIDKAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIR 240
Cdd:NF000106 117 SR-----KDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMV 191
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 241 EEHAlSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIR 282
Cdd:NF000106 192 RDGA-TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELK 232
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
11-265 |
7.47e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 61.34 E-value: 7.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGrialahgseaaFEALPAATFRG 90
Cdd:PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG-----------FRVEGKVTFHG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 91 KQwTKANGAGAVfllermpgfEIARlaRVARTFQNIRLFAgMTLLENLlvaqhtvlnaASGYTIGGLLGlasfkraeaAA 170
Cdd:PRK14243 77 KN-LYAPDVDPV---------EVRR--RIGMVFQKPNPFP-KSIYDNI----------AYGARINGYKG---------DM 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 171 IDKAAYWLREIGLVDRADDPAGD----LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalS 246
Cdd:PRK14243 125 DELVERSLRQAALWDEVKDKLKQsglsLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--T 202
|
250
....*....|....*....
gi 503183841 247 ILLIEHDMGVVMQISDRIA 265
Cdd:PRK14243 203 IIIVTHNMQQAARVSDMTA 221
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
13-284 |
1.18e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 61.94 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAafealpaaTFRGKQ 92
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY-LGKEV--------TFNGPK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 WTKANGAGAVFllermpgfeiarlarvartfQNIRLFAGMTLLENLLVaqhtvlnaasGYTIGGLLGLASFKRAEAAAID 172
Cdd:PRK10762 75 SSQEAGIGIIH--------------------QELNLIPQLTIAENIFL----------GREFVNRFGRIDWKKMYAEADK 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 173 KaaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAlSILLIEH 252
Cdd:PRK10762 125 L----LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR-GIVYISH 199
|
250 260 270
....*....|....*....|....*....|..
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:PRK10762 200 RLKEIFEICDDVTVFRDGQFIAEREVADLTED 231
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
17-281 |
1.27e-10 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 60.58 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 17 ENLTMRFG--GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAFEAlpaatfrgKQWT 94
Cdd:cd03252 4 EHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALAD--------PAWL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 KAngagavfllermpgfeiarlaRVARTFQNIRLFAGmTLLENLLVAQ-----HTVLNAASgytiggLLGLASFKRAeaa 169
Cdd:cd03252 75 RR---------------------QVGVVLQENVLFNR-SIRDNIALADpgmsmERVIEAAK------LAGAHDFISE--- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkaaywLREiGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELnalllkIREEHALS--- 246
Cdd:cd03252 124 --------LPE-GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI------MRNMHDICagr 188
|
250 260 270
....*....|....*....|....*....|....*.
gi 503183841 247 -ILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEI 281
Cdd:cd03252 189 tVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
14-253 |
1.30e-10 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 61.99 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafEALPAATFRGKq 92
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTL--------DGVPVSSLDQD- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpgfEIARlaRVARTFQNIRLFAGmTLLENLLVAQHTvlnaASGYTIGGLL---GLASfkraeaa 169
Cdd:TIGR02868 406 -------------------EVRR--RVSVCAQDAHLFDT-TVRENLRLARPD----ATDEELWAALervGLAD------- 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkaayWLREI--GLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhaLSI 247
Cdd:TIGR02868 453 -------WLRALpdGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSG--RTV 523
|
....*.
gi 503183841 248 LLIEHD 253
Cdd:TIGR02868 524 VLITHH 529
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
32-290 |
1.82e-10 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 61.66 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfrgkqwtkaNGagavfllERMPGF 111
Cdd:TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL------------------------DG-------VPLVQY 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 EIARLAR-VARTFQNIRLFAGmTLLENLLVA-----QHTVLNAASgytiggllglASFKRAEAAAIDKAAYwlREIGlvd 185
Cdd:TIGR00958 549 DHHYLHRqVALVGQEPVLFSG-SVRENIAYGltdtpDEEIMAAAK----------AANAHDFIMEFPNGYD--TEVG--- 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 186 raddPAGDLPYGAQR-RLEIARAMCTDPVLLCLDEPAAGLNPreshELNALLLKIREEHALSILLIEHDMGVVMQiSDRI 264
Cdd:TIGR00958 613 ----EKGSQLSGGQKqRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRASRTVLLIAHRLSTVER-ADQI 683
|
250 260
....*....|....*....|....*.
gi 503183841 265 AVLDYGKKIAEGTPDEIRADPRVIAA 290
Cdd:TIGR00958 684 LVLKKGSVVEMGTHKQLMEDQGCYKH 709
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
193-295 |
1.93e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 60.53 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 193 DLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDMGVVMQISDRIAVLDYGKK 272
Cdd:PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
90 100
....*....|....*....|....
gi 503183841 273 IAEGTPDEIRADPRVI-AAYLGVP 295
Cdd:PRK13649 224 VLSGKPKDIFQDVDFLeEKQLGVP 247
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
271-293 |
1.96e-10 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 54.56 E-value: 1.96e-10
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
14-284 |
2.48e-10 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 59.55 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGG--LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIaLAHGSEAAfealpaatfrgk 91
Cdd:cd03251 1 VEFKNVTFRYPGdgPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVR------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpGFEIARLAR-VARTFQNIRLFAGmTLLENLL-----VAQHTVLNAASgytiggLLGLASFKR 165
Cdd:cd03251 68 ------------------DYTLASLRRqIGLVSQDVFLFND-TVAENIAygrpgATREEVEEAAR------AANAHEFIM 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 aeaaaidkaaywlreiGLVDRADDPAGD----LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNpRESHEL--NAL--LL 237
Cdd:cd03251 123 ----------------ELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPILILDEATSALD-TESERLvqAALerLM 185
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 503183841 238 KIReehalSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEIRAD 284
Cdd:cd03251 186 KNR-----TTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ 226
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
14-286 |
2.81e-10 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 59.71 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGlVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKP----TEGRIaLAHGSEAAfealpAATFR 89
Cdd:PRK10418 5 IELRNIALQAAQ-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRV-LLDGKPVA-----PCALR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 GKQwtkangagavfllermpgfeiarlarVARTFQNIRlfagmtllenllVAQHTVLNAASgYTIGGLLGLASFKRAEAA 169
Cdd:PRK10418 78 GRK--------------------------IATIMQNPR------------SAFNPLHTMHT-HARETCLALGKPADDATL 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 AIDkaaywLREIGLVDRADDP---AGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALS 246
Cdd:PRK10418 119 TAA-----LEAVGLENAARVLklyPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALG 193
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 503183841 247 ILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK10418 194 MLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
14-272 |
3.54e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 58.66 E-value: 3.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafEALPAATFRGKQw 93
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL--------NGGPLDFQRDSI- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangAGAVFLLERMPGFEIARLARvartfQNIRLFAGmtllenlLVAQHTVLNAasgytiggllglasfkraeaaaidk 173
Cdd:cd03231 72 -----ARGLLYLGHAPGIKTTLSVL-----ENLRFWHA-------DHSDEQVEEA------------------------- 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:cd03231 110 ----LARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
250
....*....|....*....
gi 503183841 254 MGVVmqiSDRIAVLDYGKK 272
Cdd:cd03231 186 LGLS---EAGARELDLGFK 201
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
12-285 |
3.97e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 60.64 E-value: 3.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 12 DLLRVENLTMRF----GGLVAVDKLSFTARRGDITAIIGPNGAGKTtffncVTGFykpTEGRIALAHGSEAAFEALPAAT 87
Cdd:PRK10261 11 DVLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKS-----VTAL---ALMRLLEQAGGLVQCDKMLLRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 88 fRGKQWTKANGAGAVfLLERMPGFEIARLARVARTFQNIRLFAGMTLLENLLVAQhtvlnaasgyTIGGLLGLASFKRae 167
Cdd:PRK10261 83 -RSRQVIELSEQSAA-QMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ----------GASREEAMVEAKR-- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 aaaidkaaywLREIGLVDRADDPAGDLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEH 243
Cdd:PRK10261 149 ----------MLDQVRIPEAQTILSRYPHqlsgGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM 218
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 503183841 244 ALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK10261 219 SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAP 260
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-271 |
5.09e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 60.18 E-value: 5.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 1 MADGASDATRDDLLRVENLTMRFGGlvAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAF 80
Cdd:PRK09700 253 MKENVSNLAHETVFEVRNVTSRDRK--KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL-NGKDISP 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 81 EALPAATFRGKQWTKANGAGAVFLlermPGFEIARLARVARTFQNirlfagmtllenllvaqhtvlnaaSGYtiGGLLGL 160
Cdd:PRK09700 330 RSPLDAVKKGMAYITESRRDNGFF----PNFSIAQNMAISRSLKD------------------------GGY--KGAMGL 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 161 ASFKRAEAAAIDKAAYWLREIGLVDRAddpAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIR 240
Cdd:PRK09700 380 FHEVDEQRTAENQRELLALKCHSVNQN---ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456
|
250 260 270
....*....|....*....|....*....|.
gi 503183841 241 EEhALSILLIEHDMGVVMQISDRIAVLDYGK 271
Cdd:PRK09700 457 DD-GKVILMVSSELPEIITVCDRIAVFCEGR 486
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
14-271 |
6.73e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 58.54 E-value: 6.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGriALAHGSEaafealPAATFRgkqw 93
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG--ELLAGTA------PLAEAR---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkangagavfllermpgfEIARLarvarTFQNIRLFAGMTLLENllvaqhtvlnaasgytIGglLGLASFKRAEAAAIdk 173
Cdd:PRK11247 81 ------------------EDTRL-----MFQDARLLPWKKVIDN----------------VG--LGLKGQWRDAALQA-- 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:PRK11247 118 ----LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
250
....*....|....*...
gi 503183841 254 MGVVMQISDRIAVLDYGK 271
Cdd:PRK11247 194 VSEAVAMADRVLLIEEGK 211
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
14-72 |
9.51e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 57.15 E-value: 9.51e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGF--YKPTEGRIAL 72
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILF 61
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
14-224 |
2.32e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 56.42 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALPAATFRGKQw 93
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 tkaNGagavfllermpgfeiarlarvartfqnirLFAGMTLLENLLVAQHtVLNaasgytiGGLLGLASFkraeaaaidk 173
Cdd:PRK13539 82 ---NA-----------------------------MKPALTVAENLEFWAA-FLG-------GEELDIAAA---------- 111
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 503183841 174 aaywLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGL 224
Cdd:PRK13539 112 ----LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
13-286 |
2.69e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 57.44 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGG----LVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKpTEGRIAlahGSEAAFEALPAATF 88
Cdd:PRK11022 3 LLNVDKLSVHFGDesapFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID-YPGRVM---AEKLEFNGQDLQRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RGKQWTKANGAgavfllermpgfEIARLARVARTFQNIRLFAGMTLLENLLVAQhtvlnaasgytiGGllglasFKRAEA 168
Cdd:PRK11022 79 SEKERRNLVGA------------EVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ------------GG------NKKTRR 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAaywLREIGLVD---RADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHAL 245
Cdd:PRK11022 129 QRAIDL---LNQVGIPDpasRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM 205
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 503183841 246 SILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK11022 206 ALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
11-286 |
2.83e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.94 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTMRF---GGLV--------AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaa 79
Cdd:PRK10261 311 EPILQVRNLVTRFplrSGLLnrvtrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI--------- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 80 fealpaaTFRGKQwtkangagavflLERMPGFEIARLAR-VARTFQNI------RLFAGMTLLENLLVaqHTVLNaasgy 152
Cdd:PRK10261 382 -------IFNGQR------------IDTLSPGKLQALRRdIQFIFQDPyasldpRQTVGDSIMEPLRV--HGLLP----- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 153 tiggllGLASFKRAEaaaidkaayWLRE-IGLVDradDPAGDLPY---GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPR 227
Cdd:PRK10261 436 ------GKAAAARVA---------WLLErVGLLP---EHAWRYPHefsGGQRqRICIARALALNPKVIIADEAVSALDVS 497
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 503183841 228 ESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIRADPR 286
Cdd:PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ 556
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
178-285 |
3.12e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 57.12 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 178 LREIGLVDRaDDPAGDLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHD 253
Cdd:PRK15093 140 LHRVGIKDH-KDAMRSFPYelteGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
|
90 100 110
....*....|....*....|....*....|..
gi 503183841 254 MGVVMQISDRIAVLDYGKKIAEGTPDEIRADP 285
Cdd:PRK15093 219 LQMLSQWADKINVLYCGQTVETAPSKELVTTP 250
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
36-280 |
3.72e-09 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 57.36 E-value: 3.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 36 ARRGDITAIIGPNGAGKTTFFNcvtgfykptegriALAHGSEAAFEALPAATFRGKQWTKANgagavflLERMPGFeiar 115
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMN-------------ALAFRSPKGVKGSGSVLLNGMPIDAKE-------MRAISAY---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 116 larvartFQNIRLFAGM-TLLENLLVAQHTVLNAASGYTIggllglasfKRAEAAAIdkaaywLREIGLVDRADDPAGD- 193
Cdd:TIGR00955 104 -------VQQDDLFIPTlTVREHLMFQAHLRMPRRVTKKE---------KRERVDEV------LQALGLRKCANTRIGVp 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 194 -----LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:TIGR00955 162 grvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA 241
|
250
....*....|..
gi 503183841 269 YGKKIAEGTPDE 280
Cdd:TIGR00955 242 EGRVAYLGSPDQ 253
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
14-275 |
4.19e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 57.32 E-value: 4.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTmrfgGLvAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHgseaafealPAATFRGKQW 93
Cdd:PRK10762 258 LKVDNLS----GP-GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG---------HEVVTRSPQD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 94 TKANGAgaVFLLERMPGfeiarlarvartfqnIRLFAGMTLLENLLVaqhTVLNAASgYTIGGL------LGLASFKRae 167
Cdd:PRK10762 324 GLANGI--VYISEDRKR---------------DGLVLGMSVKENMSL---TALRYFS-RAGGSLkhadeqQAVSDFIR-- 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 168 aaaidkaaywLREIGLVDRaDDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSI 247
Cdd:PRK10762 381 ----------LFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSI 448
|
250 260
....*....|....*....|....*...
gi 503183841 248 LLIEHDMGVVMQISDRIAVLDYGKKIAE 275
Cdd:PRK10762 449 ILVSSEMPEVLGMSDRILVMHEGRISGE 476
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
14-70 |
4.84e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.21 E-value: 4.84e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 503183841 14 LRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
13-278 |
5.73e-09 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 55.85 E-value: 5.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRF--GGLVA-------VDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEAL 83
Cdd:PRK10419 3 LLNVSGLSHHYahGGLSGkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 84 PAATFRGK-QWTKANGAGAVfllermpgfeiarlarvartfqNIRLFAGMTLLENLlvaQHtvlnaasgytiggLLGLAS 162
Cdd:PRK10419 83 QRKAFRRDiQMVFQDSISAV----------------------NPRKTVREIIREPL---RH-------------LLSLDK 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 163 FKRAEAAAIDkaaywLREIGLVDR-ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIRE 241
Cdd:PRK10419 125 AERLARASEM-----LRAVDLDDSvLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
|
250 260 270
....*....|....*....|....*....|....*..
gi 503183841 242 EHALSILLIEHDMGVVMQISDRIAVLDYGkKIAEGTP 278
Cdd:PRK10419 200 QFGTACLFITHDLRLVERFCQRVMVMDNG-QIVETQP 235
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
29-281 |
5.82e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 55.89 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 29 VDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTKANGagavfllerm 108
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID----------------GDLLTEENV---------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 109 pgFEIARlaRVARTFQNI-RLFAGMTL-------LENLLVA----QHTVLNAASgytiggLLGLASFKRaeaaaidkaay 176
Cdd:PRK13650 77 --WDIRH--KIGMVFQNPdNQFVGATVeddvafgLENKGIPheemKERVNEALE------LVGMQDFKE----------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 177 wlREiglvdraddPAgDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGV 256
Cdd:PRK13650 136 --RE---------PA-RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203
|
250 260
....*....|....*....|....*
gi 503183841 257 VmQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:PRK13650 204 V-ALSDRVLVMKNGQVESTSTPREL 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-283 |
1.03e-08 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 56.12 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 4 GASDATR-DDLLRVENLTMRFGGLV-AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafe 81
Cdd:PRK13657 324 GAIDLGRvKGAVEFDDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI----------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 82 alpaatfrgkqwtkangagavflleRMPGFEIARLAR------VARTFQNIRLFAgMTLLENLLVAQHTVLNAAsgytig 155
Cdd:PRK13657 393 -------------------------LIDGTDIRTVTRaslrrnIAVVFQDAGLFN-RSIEDNIRVGRPDATDEE------ 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 156 glLGLASfKRAEAAAIDKAaywlREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNAL 235
Cdd:PRK13657 441 --MRAAA-ERAQAHDFIER----KPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAA 513
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 503183841 236 LLKIReeHALSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:PRK13657 514 LDELM--KGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELVA 558
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
13-220 |
1.19e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 54.04 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgseaafealpaatfRGKq 92
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW----------------QGE- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 93 wtkangagavfllermpgfeiaRLARVARTFQNIRLFAG--------MTLLENLLVAQHtvlnaasgytIGGLLGLASfk 164
Cdd:PRK13538 64 ----------------------PIRRQRDEYHQDLLYLGhqpgikteLTALENLRFYQR----------LHGPGDDEA-- 109
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 165 raeaaaidkAAYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEP 220
Cdd:PRK13538 110 ---------LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
16-70 |
1.61e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 55.73 E-value: 1.61e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 503183841 16 VENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
27-295 |
1.93e-08 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 54.08 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 27 VAVDK----LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkPTEGRIALAhgseaafealpaatfrGKQwtkangagav 102
Cdd:COG4138 6 VAVAGrlgpISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLN----------------GRP---------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 103 flLERMPGFEIARLarvaRTF--QNIRLFAGMTLLENLlvAQHTVLNAASGYTIGGLLGLAsfkraeaaaidkaaywlRE 180
Cdd:COG4138 59 --LSDWSAAELARH----RAYlsQQQSPPFAMPVFQYL--ALHQPAGASSEAVEQLLAQLA-----------------EA 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 181 IGLVDRADDPAGDLPYGAQRRLEIArAMC--------TDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEH 252
Cdd:COG4138 114 LGLEDKLSRPLTQLSGGEWQRVRLA-AVLlqvwptinPEGQLLLLDEPMNSLDVAQQAALDRLLRELCQQ-GITVVMSSH 191
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 503183841 253 DMGVVMQISDRIAVLDYGKKIAEGTPDEIrADPRVIAAYLGVP 295
Cdd:COG4138 192 DLNHTLRHADRVWLLKQGKLVASGETAEV-MTPENLSEVFGVK 233
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
194-285 |
2.60e-08 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 54.14 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 194 LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKI 273
Cdd:COG4170 159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238
|
90
....*....|..
gi 503183841 274 AEGTPDEIRADP 285
Cdd:COG4170 239 ESGPTEQILKSP 250
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
177-238 |
2.86e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 54.64 E-value: 2.86e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503183841 177 WLREIGLVDR-ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPresheLNALLLK 238
Cdd:PRK10938 384 WLDILGIDKRtADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP-----LNRQLVR 441
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
9-271 |
3.28e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 54.45 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRF---GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkptEGRialaHGSEAAFEALPA 85
Cdd:TIGR02633 253 IGDVILEARNLTCWDvinPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY---PGK----FEGNVFINGKPV 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 ATfrgKQWTKANGAGAVFLLERmpgfeiarlarvaRTFQNIrlfagmtlLENLLVAQHTVLNAASGYTIGGLLGLASfkr 165
Cdd:TIGR02633 326 DI---RNPAQAIRAGIAMVPED-------------RKRHGI--------VPILGVGKNITLSVLKSFCFKMRIDAAA--- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 aeaaaidkaaywlrEIGLVDRA-----------DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNA 234
Cdd:TIGR02633 379 --------------ELQIIGSAiqrlkvktaspFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444
|
250 260 270
....*....|....*....|....*....|....*..
gi 503183841 235 LLLKIREEhALSILLIEHDMGVVMQISDRIAVLDYGK 271
Cdd:TIGR02633 445 LINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGK 480
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
193-286 |
5.07e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 53.94 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 193 DLPY----GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:PRK15134 152 DYPHqlsgGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231
|
90
....*....|....*...
gi 503183841 269 YGKKIAEGTPDEIRADPR 286
Cdd:PRK15134 232 NGRCVEQNRAATLFSAPT 249
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
14-278 |
8.37e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 51.73 E-value: 8.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRF--GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIalahgseaafealpaatfrgk 91
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI--------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavflleRMPGFEIARLA-RVARTF-----QNIRLFAGmTLLENLlvaqhTVLNAASGYTIGGLLGLASFKR 165
Cdd:cd03244 62 ---------------LIDGVDISKIGlHDLRSRisiipQDPVLFSG-TIRSNL-----DPFGEYSDEELWQALERVGLKE 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAAAidkaaywlrEIGLVDRADDPAGDLPYGaQRRL-EIARAMCTDPVLLCLDEPAAGLNPreshELNALLLK-IREE- 242
Cdd:cd03244 121 FVESL---------PGGLDTVVEEGGENLSVG-QRQLlCLARALLRKSKILVLDEATASVDP----ETDALIQKtIREAf 186
|
250 260 270
....*....|....*....|....*....|....*.
gi 503183841 243 HALSILLIEHDMGVVMQiSDRIAVLDYGKKIAEGTP 278
Cdd:cd03244 187 KDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
37-268 |
1.65e-07 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 51.32 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 37 RRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafealpaatfrGKQWTKANGAGAVFLLERMPGFeiarl 116
Cdd:PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLV----------------GQPLHQMDEEARAKLRAKHVGF----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 117 arvarTFQNIRLFAGMTLLENLlvaqhtvlnaasgyTIGGLLGLASFKRAEAAAIDKaaywLREIGLVDRADDPAGDLPY 196
Cdd:PRK10584 93 -----VFQSFMLIPTLNALENV--------------ELPALLRGESSRQSRNGAKAL----LEQLGLGKRLDHLPAQLSG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503183841 197 GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
13-300 |
3.27e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 50.60 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTG-FYKPTE-------GRIALAHGSEAAFEALP 84
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdLTGGGAprgarvtGDVTLNGEPLAAIDAPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 85 AATFRgkqwtkangagAVFLLERMPGF-----EIARLARV--ARTFQNIRLFAGMTLLENLLVAQHTVLNAASGYTI-GG 156
Cdd:PRK13547 81 LARLR-----------AVLPQAAQPAFafsarEIVLLGRYphARRAGALTHRDGEIAWQALALAGATALVGRDVTTLsGG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 157 LLGLASFKRAEaaaidkaaywlreiglvdraddpagdlpygAQrrLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALL 236
Cdd:PRK13547 150 ELARVQFARVL------------------------------AQ--LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 237 LKIREEHALSILLIEHDMGVVMQISDRIAVLDYGKKIAEGTPDEIrADPRVIAAYLGVPDDEVE 300
Cdd:PRK13547 198 RRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV-LTPAHIARCYGFAVRLVD 260
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-281 |
4.41e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 49.93 E-value: 4.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 27 VAVDK----LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYkPTEGRIALAhgseaafealpaatfrGKqwtkangagav 102
Cdd:PRK03695 6 VAVSTrlgpLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFA----------------GQ----------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 103 fLLERMPGFEIARlaRVARTFQNIRLFAGMTLLENLLVAQHTvlNAASGYTIGGLLGLASFkraeaaaidkaaywlreIG 182
Cdd:PRK03695 58 -PLEAWSAAELAR--HRAYLSQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEA-----------------LG 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 183 LVDRADDPAGDLPYGAQRR-------LEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDMG 255
Cdd:PRK03695 116 LDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLN 194
|
250 260
....*....|....*....|....*.
gi 503183841 256 VVMQISDRIAVLDYGKKIAEGTPDEI 281
Cdd:PRK03695 195 HTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
9-253 |
6.69e-07 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 49.33 E-value: 6.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhGSEAAfeALPAATF 88
Cdd:PRK10247 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE-GEDIS--TLKPEIY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 89 RgKQwtkangagavfllermpgfeiarlarVARTFQNIRLFaGMTLLENLLVAqhtvlnaasgYTIggllglasfkRAEA 168
Cdd:PRK10247 80 R-QQ--------------------------VSYCAQTPTLF-GDTVYDNLIFP----------WQI----------RNQQ 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 169 AAIDKAAYWLREIGLVDRA-DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSI 247
Cdd:PRK10247 112 PDPAIFLDDLERFALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV 191
|
....*.
gi 503183841 248 LLIEHD 253
Cdd:PRK10247 192 LWVTHD 197
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
32-280 |
7.43e-07 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 49.46 E-value: 7.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAFEALPaaTFRGKqwtkangagavfllermpgf 111
Cdd:cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL-DGVDIRDLNLR--WLRSQ-------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 eiarLARVArtfQNIRLFAGmTLLENLL-----VAQHTVLNAASGYTIggllglASFKraeaaaidkaaywlreIGLVDR 186
Cdd:cd03249 79 ----IGLVS---QEPVLFDG-TIAENIRygkpdATDEEVEEAAKKANI------HDFI----------------MSLPDG 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 187 ADDPAGD----LPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHDMGVVmQISD 262
Cdd:cd03249 129 YDTLVGErgsqLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGR--TTIVIAHRLSTI-RNAD 205
|
250
....*....|....*...
gi 503183841 263 RIAVLDYGKKIAEGTPDE 280
Cdd:cd03249 206 LIAVLQNGQVVEQGTHDE 223
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
30-264 |
8.58e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 50.11 E-value: 8.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 30 DKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEG--RIAlahGSEAAfealpaatfrgkqwtkangagavflleR 107
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGtyRVA---GQDVA---------------------------T 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 MPGFEIARLARVARTFqnirLFAGMTLLENLLVAQHTVLNAASGytiggllGLASFKRAEAAAIDkaaywLREIGLVDRA 187
Cdd:PRK10535 75 LDADALAQLRREHFGF----IFQRYHLLSHLTAAQNVEVPAVYA-------GLERKQRLLRAQEL-----LQRLGLEDRV 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503183841 188 DDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE-HalSILLIEHDMGVVMQiSDRI 264
Cdd:PRK10535 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRgH--TVIIVTHDPQVAAQ-AERV 213
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-84 |
1.76e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 49.04 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 2 ADGASDATRDDLLRVENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAF 80
Cdd:COG4178 351 AASRIETSEDGALALEDLTLRTpDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAGARVLF 430
|
....
gi 503183841 81 eaLP 84
Cdd:COG4178 431 --LP 432
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
178-264 |
1.78e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 48.02 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 178 LREIGL----VDRAddpAGDLPYGAQRRLEIAR--AMCTDPVLLCLDEPAAGLNPRESHELNALLLKIReEHALSILLIE 251
Cdd:cd03270 121 LVDVGLgyltLSRS---APTLSGGEAQRIRLATqiGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVE 196
|
90
....*....|...
gi 503183841 252 HDMGvVMQISDRI 264
Cdd:cd03270 197 HDED-TIRAADHV 208
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
213-293 |
2.86e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.86 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 213 VLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDmgvvmqiSDRIAVLDY------------GKKIAEGTPDE 280
Cdd:TIGR00630 510 VLYVLDEPSIGLHQRDNRRLINTLKRLRDL-GNTLIVVEHD-------EDTIRAADYvidigpgagehgGEVVASGTPEE 581
|
90
....*....|....
gi 503183841 281 IRADPR-VIAAYLG 293
Cdd:TIGR00630 582 ILANPDsLTGQYLS 595
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
32-276 |
2.88e-06 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 47.16 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTG--FYKPTEGRIALahgseaafealpaatfrgkqwtkaNGagavfllerMP 109
Cdd:cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLI------------------------NG---------RP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 110 GFEIARLARVARTFQNIRLFAGMTLLENLLVAQHtvlnaasgytIGGLLGlasfkraeaaaidkaaywlreiglvdradd 189
Cdd:cd03213 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK----------LRGLSG------------------------------ 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 190 pagdlpyGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLDY 269
Cdd:cd03213 115 -------GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187
|
....*..
gi 503183841 270 GKKIAEG 276
Cdd:cd03213 188 GRVIYFG 194
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
28-70 |
3.33e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 47.50 E-value: 3.33e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
16-276 |
4.36e-06 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 47.18 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 16 VENLTMRF-GGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAhgseaafeALPAatfrgKQWT 94
Cdd:PRK15056 9 VNDVTVTWrNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL--------GQPT-----RQAL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 95 KANgagavfLLERMPGFEiarlaRVARTFQnirlfagmTLLENLlvaqhtVLNAASGYTigGLLglasfKRAEAAAIDKA 174
Cdd:PRK15056 76 QKN------LVAYVPQSE-----EVDWSFP--------VLVEDV------VMMGRYGHM--GWL-----RRAKKRDRQIV 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 175 AYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDM 254
Cdd:PRK15056 124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNL 202
|
250 260
....*....|....*....|..
gi 503183841 255 GVVMQISDrIAVLDYGKKIAEG 276
Cdd:PRK15056 203 GSVTEFCD-YTVMVKGTVLASG 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
11-284 |
4.48e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.00 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 11 DDLLRVENLTM---------RfgglvaVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYK-PTEGRIALaHGSEAAF 80
Cdd:PRK13549 257 EVILEVRNLTAwdpvnphikR------VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFI-DGKPVKI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 81 EAlPAatfrgkqwtKANGAGAVFLLERMPGFEIARLARVArtfQNIRL-----FAGMTLLENllvaqhtvlnAASGYTIg 155
Cdd:PRK13549 330 RN-PQ---------QAIAQGIAMVPEDRKRDGIVPVMGVG---KNITLaaldrFTGGSRIDD----------AAELKTI- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 156 gllgLASFKRaeaaaidkaaywlreigLVDRADDPA---GDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHEL 232
Cdd:PRK13549 386 ----LESIQR-----------------LKVKTASPElaiARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 503183841 233 NALLLKIREEHaLSILLIEHDMGVVMQISDRIAVldygkkIAEGtpdEIRAD 284
Cdd:PRK13549 445 YKLINQLVQQG-VAIIVISSELPEVLGLSDRVLV------MHEG---KLKGD 486
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
187-271 |
4.68e-06 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 47.74 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 187 ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHaLSILLIEHDMGVVMQISDRIAV 266
Cdd:PRK15439 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-VAVLFISSDLEEIEQMADRVLV 475
|
....*
gi 503183841 267 LDYGK 271
Cdd:PRK15439 476 MHQGE 480
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
32-72 |
4.68e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 47.87 E-value: 4.68e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAL 72
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILL 391
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
14-78 |
7.67e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 45.92 E-value: 7.67e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLVAVDK-----LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEA 78
Cdd:cd03250 1 ISVEDASFTWDSGEQETSftlkdINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV-PGSIA 69
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
9-70 |
8.17e-06 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 46.17 E-value: 8.17e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 9 TRDDLLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGF--YKPTEGRI 70
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDI 66
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
14-88 |
1.14e-05 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 46.50 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFG-GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAL-----AHGSEAAFEALPAAT 87
Cdd:PRK10522 323 LELRNVTFAYQdNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLdgkpvTAEQPEDYRKLFSAV 402
|
.
gi 503183841 88 F 88
Cdd:PRK10522 403 F 403
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
6-70 |
1.39e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 46.34 E-value: 1.39e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503183841 6 SDATRDDLLRVENLTMRFGGLvavdKLSF---TARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK13409 333 DESERETLVEYPDLTKKLGDF----SLEVeggEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
197-280 |
1.83e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.36 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQRRLEIARAMCTD--PVLLCLDEPAAGLNPRESHELNALLLKIREEhALSILLIEHDMGVVmQISDRI------AVLD 268
Cdd:PRK00635 480 GEQERTALAKHLGAEliGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDEQMI-SLADRIidigpgAGIF 557
|
90
....*....|..
gi 503183841 269 YGKKIAEGTPDE 280
Cdd:PRK00635 558 GGEVLFNGSPRE 569
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
213-292 |
1.85e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 46.17 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 213 VLLCLDEPAAGLNPRESHELNALLLKIREehaL--SILLIEHDMGvVMQISDRIavLDYGKK--------IAEGTPDEIR 282
Cdd:COG0178 507 VLYVLDEPSIGLHQRDNDRLIETLKRLRD---LgnTVIVVEHDED-TIRAADYI--IDIGPGagehggevVAQGTPEEIL 580
|
90
....*....|.
gi 503183841 283 ADPRVI-AAYL 292
Cdd:COG0178 581 KNPDSLtGQYL 591
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
187-271 |
2.11e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.71 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 187 ADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREehalSILLIEHDMGVVMQISDRIAV 266
Cdd:PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISHDRSFIRNMATRIVD 225
|
....*
gi 503183841 267 LDYGK 271
Cdd:PRK11147 226 LDRGK 230
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
14-278 |
2.45e-05 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 44.33 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMRFGGLV--AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAAfeALPAATFRgk 91
Cdd:cd03369 7 IEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI-DGIDIS--TIPLEDLR-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 92 qwtkangagavfllermpgfeiARLARVArtfQNIRLFAGmTLLENLLVAQHtvlnaasgytiggllglasfkraeaaai 171
Cdd:cd03369 82 ----------------------SSLTIIP---QDPTLFSG-TIRSNLDPFDE---------------------------- 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 172 dkaaYWLREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNpresHELNALLLK-IREEHALS-ILL 249
Cdd:cd03369 108 ----YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID----YATDALIQKtIREEFTNStILT 179
|
250 260
....*....|....*....|....*....
gi 503183841 250 IEHDMGVVMQIsDRIAVLDYGKKIAEGTP 278
Cdd:cd03369 180 IAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
30-275 |
2.80e-05 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 44.56 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 30 DKLSFTARRGDITAIIGPNGAGKTTFFNCVTGfykptegriALAHGSEAAFEALPAATFrgkqWTKANGagavfllermp 109
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAG---------ALKGTPVAGCVDVPDNQF----GREASL----------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 110 gfeIARLARVARTFQNIRlfagmtllenllvaqhtVLNAAsgytiggllGLASfkraeaaaidkAAYWLReiglvdradd 189
Cdd:COG2401 103 ---IDAIGRKGDFKDAVE-----------------LLNAV---------GLSD-----------AVLWLR---------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 190 PAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQIS-DRIAVLD 268
Cdd:COG2401 133 RFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVG 212
|
....*..
gi 503183841 269 YGKKIAE 275
Cdd:COG2401 213 YGGVPEE 219
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
28-70 |
4.98e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 44.50 E-value: 4.98e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
10-281 |
6.37e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 44.34 E-value: 6.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 10 RDDLLRVENLTMRfgGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSE----AAFEALpa 85
Cdd:PRK10982 247 GEVILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL-HGKKinnhNANEAI-- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 86 atfrgkqwtkANGAGAVFLLERMPGfeiarlarvartfqnirLFAGMTLLENLLVAqhtvlNAASGYTIGGLLGLASFKR 165
Cdd:PRK10982 322 ----------NHGFALVTEERRSTG-----------------IYAYLDIGFNSLIS-----NIRNYKNKVGLLDNSRMKS 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 166 AEAaaidkaayWLreiglVD--RADDPA-----GDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLK 238
Cdd:PRK10982 370 DTQ--------WV-----IDsmRVKTPGhrtqiGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 503183841 239 IREEHAlSILLIEHDMGVVMQISDRIAVLDYGK-----KIAEGTPDEI 281
Cdd:PRK10982 437 LAKKDK-GIIIISSEMPELLGITDRILVMSNGLvagivDTKTTTQNEI 483
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
199-281 |
6.88e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 44.34 E-value: 6.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 199 QRRL-EIARAMCTDPVLLCLDEPAAGLNPREshelNALLLK-IREE-HALSILLIEHDMGVVMQiSDRIAVLDYGKKIAE 275
Cdd:PLN03130 1379 QRQLlSLARALLRRSKILVLDEATAAVDVRT----DALIQKtIREEfKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF 1453
|
....*.
gi 503183841 276 GTPDEI 281
Cdd:PLN03130 1454 DTPENL 1459
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
197-280 |
7.09e-05 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHDMGVVMQiSDRIAVLDYGKKIAEG 276
Cdd:cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217
|
....
gi 503183841 277 TPDE 280
Cdd:cd03253 218 THEE 221
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
5-70 |
8.29e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 44.00 E-value: 8.29e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503183841 5 ASDATRDDLLRVENLTMRFGGLvavdKLSF---TARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:COG1245 333 RREKEEETLVEYPDLTKSYGGF----SLEVeggEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV 397
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
37-70 |
9.49e-05 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 43.17 E-value: 9.49e-05
10 20 30
....*....|....*....|....*....|....
gi 503183841 37 RRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
32-281 |
1.05e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.86 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAfealPAATFRGKQWTKANGAGavflLERMPGF 111
Cdd:PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN----DMTNEQDYQGDEEQNVG----MKNVNEF 1258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 112 EIARLARVArtfQNIRLF--AGMTLLENLLVAQHTVLNAASGYTIGG----LLGLASFKRAEAAAIDKAAYWLREI---- 181
Cdd:PTZ00265 1259 SLTKEGGSG---EDSTVFknSGKILLDGVDICDYNLKDLRNLFSIVSqepmLFNMSIYENIKFGKEDATREDVKRAckfa 1335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 182 -------GLVDRADDPAGdlPYGA------QRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSIL 248
Cdd:PTZ00265 1336 aidefieSLPNKYDTNVG--PYGKslsggqKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
|
250 260 270
....*....|....*....|....*....|....*...
gi 503183841 249 LIEHDMGVVMQiSDRIAVLDYGKKI-----AEGTPDEI 281
Cdd:PTZ00265 1414 TIAHRIASIKR-SDKIVVFNNPDRTgsfvqAHGTHEEL 1450
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
41-60 |
1.22e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 42.10 E-value: 1.22e-04
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
28-283 |
2.29e-04 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 42.70 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 28 AVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALaHGSEAafealpaatfrgKQWTKANgagavfLLEr 107
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL-DGHDL------------RDYTLAS------LRN- 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 108 mpgfeiarlaRVARTFQNIRLFagmtlleNLLVAQHTVLNAASGYTiggllglasfkRAEAAAIDKAAYWLREIGLVDRA 187
Cdd:PRK11176 418 ----------QVALVSQNVHLF-------NDTIANNIAYARTEQYS-----------REQIEEAARMAYAMDFINKMDNG 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 188 DDPA----GDLPYGAQR-RLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHalSILLIEHDMGVVMQiSD 262
Cdd:PRK11176 470 LDTVigenGVLLSGGQRqRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTIEK-AD 546
|
250 260
....*....|....*....|.
gi 503183841 263 RIAVLDYGKKIAEGTPDEIRA 283
Cdd:PRK11176 547 EILVVEDGEIVERGTHAELLA 567
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
14-89 |
2.42e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 40.99 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENLTMR--FGGLVaVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEA----LPAAT 87
Cdd:cd03223 1 IELENLSLAtpDGRVL-LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPqrpyLPLGT 79
|
..
gi 503183841 88 FR 89
Cdd:cd03223 80 LR 81
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
13-70 |
3.33e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 41.09 E-value: 3.33e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
193-268 |
3.92e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.63 E-value: 3.92e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 193 DLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALSILLIEHDMGVVMQISDRIAVLD 268
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
14-72 |
4.34e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 40.76 E-value: 4.34e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 14 LRVENltmrFGGLVAVDKLSFTArrgDITAIIGPNGAGKTTFFNCVT-GFYKPTEGRIAL 72
Cdd:COG0419 5 LRLEN----FRSYRDTETIDFDD---GLNLIVGPNGAGKSTILEAIRyALYGKARSRSKL 57
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
32-70 |
4.37e-04 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 41.73 E-value: 4.37e-04
10 20 30
....*....|....*....|....*....|....*....
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:COG5265 377 VSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRI 415
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
197-295 |
5.98e-04 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 41.17 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQR-RLEIARAMCTDPVLLCLDEPAAGLNPreshelnALLLKIREEHA-------LSILLIEHDMGVVMQISDRIAVLD 268
Cdd:PRK11000 136 GGQRqRVAIGRTLVAEPSVFLLDEPLSNLDA-------ALRVQMRIEISrlhkrlgRTMIYVTHDQVEAMTLADKIVVLD 208
|
90 100
....*....|....*....|....*....
gi 503183841 269 YGKKIAEGTPDEIRADP--RVIAAYLGVP 295
Cdd:PRK11000 209 AGRVAQVGKPLELYHYPanRFVAGFIGSP 237
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
197-281 |
7.19e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 41.11 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 197 GAQRRLEIARAMCTDPVLLCLDEPAAGLNPResheLNALLLK-IREE-HALSILLIEHDMGVVMQiSDRIAVLDYGKKIA 274
Cdd:PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVR----TDSLIQRtIREEfKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE 1449
|
....*..
gi 503183841 275 EGTPDEI 281
Cdd:PLN03232 1450 YDSPQEL 1456
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
213-292 |
7.61e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 41.21 E-value: 7.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 213 VLLCLDEPAAGLNPRESHELNALLLKIREehaL--SILLIEHDmgvvmqiSDRIAVLDY------------GKKIAEGTP 278
Cdd:PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRD---LgnTLIVVEHD-------EDTIRAADYivdigpgagvhgGEVVASGTP 580
|
90
....*....|....*
gi 503183841 279 DEIRADPRVI-AAYL 292
Cdd:PRK00349 581 EEIMKNPNSLtGQYL 595
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
190-272 |
1.56e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.84 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 190 PAGDLPYGAQRRLEIARAMC--TDPVLLCLDEPAAGLNPReshELNALLLKIRE--EHALSILLIEHDMGvVMQISDRIa 265
Cdd:cd03238 84 KLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQ---DINQLLEVIKGliDLGNTVILIEHNLD-VLSSADWI- 158
|
....*..
gi 503183841 266 vLDYGKK 272
Cdd:cd03238 159 -IDFGPG 164
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
15-70 |
1.62e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.11 E-value: 1.62e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 503183841 15 RVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRV 58
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
177-272 |
1.82e-03 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 38.76 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 177 WLREIGLVDRaddpagdlpygaqRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIrEEHALSILL-IEHDMG 255
Cdd:cd03232 105 LLRGLSVEQR-------------KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-ADSGQAILCtIHQPSA 170
|
90
....*....|....*..
gi 503183841 256 VVMQISDRIAVLDYGKK 272
Cdd:cd03232 171 SIFEKFDRLLLLKRGGK 187
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
178-283 |
1.88e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 39.72 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 178 LREIGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNP---RESHELNAlllKIREEHAlsilliehDM 254
Cdd:NF033858 121 LRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPlsrRQFWELID---RIRAERP--------GM 189
|
90 100 110
....*....|....*....|....*....|....*..
gi 503183841 255 GVV-----M---QISDRIAVLDYGKKIAEGTPDEIRA 283
Cdd:NF033858 190 SVLvatayMeeaERFDWLVAMDAGRVLATGTPAELLA 226
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
37-72 |
2.30e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 38.32 E-value: 2.30e-03
10 20 30
....*....|....*....|....*....|....*.
gi 503183841 37 RRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIAL 72
Cdd:cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
190-281 |
2.40e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.81 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 190 PAGDLPYGAQRRLEIAR---AMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREE-HalSILLIEHDMGVVmQISDRia 265
Cdd:PRK00635 806 PLSSLSGGEIQRLKLAYellAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQgH--TVVIIEHNMHVV-KVADY-- 880
|
90 100
....*....|....*....|....
gi 503183841 266 VLDYGKK--------IAEGTPDEI 281
Cdd:PRK00635 881 VLELGPEggnlggylLASCSPEEL 904
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
24-277 |
2.81e-03 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 39.32 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 24 GGLVAVDKLSFTARRG-----DIT---------AIIGPNGAGKTTFFNCVTGFYKPTEGRIALahgSEAAFEALPAATFR 89
Cdd:PRK10790 338 SGRIDIDNVSFAYRDDnlvlqNINlsvpsrgfvALVGHTGSGKSTLASLLMGYYPLTEGEIRL---DGRPLSSLSHSVLR 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 90 gkqwtkaNGagaVFLLERMPgfeiarlARVARTFqnirlFAGMTLLENllVAQHTVLNAASgytiggLLGLASFKRAEAA 169
Cdd:PRK10790 415 -------QG---VAMVQQDP-------VVLADTF-----LANVTLGRD--ISEEQVWQALE------TVQLAELARSLPD 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 170 aidkaaywlreiGLVDRADDPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHELNALLLKIREEHALsiLL 249
Cdd:PRK10790 465 ------------GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL--VV 530
|
250 260
....*....|....*....|....*...
gi 503183841 250 IEHDMGVVMQiSDRIAVLDYGKKIAEGT 277
Cdd:PRK10790 531 IAHRLSTIVE-ADTILVLHRGQAVEQGT 557
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
38-101 |
2.96e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 37.35 E-value: 2.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503183841 38 RGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHGSEAAFEALPAATFRGKQWTKANGAGA 101
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGE 64
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
32-70 |
3.75e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 38.86 E-value: 3.75e-03
10 20 30
....*....|....*....|....*....|....*....
gi 503183841 32 LSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRI 70
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
41-59 |
4.67e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 37.59 E-value: 4.67e-03
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
37-271 |
4.90e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 38.61 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 37 RRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRialaHGSEAAFEAlpaatfrgkqwtkangagavfLLERMPGFEI--- 113
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELKPNLGD----YDEEPSWDE---------------------VLKRFRGTELqdy 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 114 -ARLA----RVARTFQNI----RLFAGMT--LLENllVAQHTVLNaasgyTIGGLLGLASfkraeaaaidkaaywlreig 182
Cdd:COG1245 152 fKKLAngeiKVAHKPQYVdlipKVFKGTVreLLEK--VDERGKLD-----ELAEKLGLEN-------------------- 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503183841 183 LVDRaddPAGDLPYGAQRRLEIARAMCTDPVLLCLDEPAAGLNPREshELNALLLkIRE--EHALSILLIEHDMGVVMQI 260
Cdd:COG1245 205 ILDR---DISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQ--RLNVARL-IRElaEEGKYVLVVEHDLAILDYL 278
|
250
....*....|.
gi 503183841 261 SDRIAVLdYGK 271
Cdd:COG1245 279 ADYVHIL-YGE 288
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
25-70 |
5.38e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 38.19 E-value: 5.38e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 503183841 25 GLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGF--------YKPTEGRI 70
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELwpvyggrlTKPAKGKL 517
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
37-69 |
5.59e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 38.25 E-value: 5.59e-03
10 20 30
....*....|....*....|....*....|...
gi 503183841 37 RRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGR 69
Cdd:PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
13-75 |
8.22e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 37.84 E-value: 8.22e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503183841 13 LLRVENLTMRFGGLVAVDKLSFTARRGDITAIIGPNGAGKTTFFNCVTGFYKPTEGRIALAHG 75
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG 374
|
|
| |
