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Conserved domains on  [gi|503132291|ref|WP_013366952|]
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DNA-binding transcriptional repressor DeoR [[Enterobacter] lignolyticus]

Protein Classification

DNA-binding transcriptional repressor DeoR( domain architecture ID 11484870)

DNA-binding transcriptional repressor DeoR is one of the repressors that regulate the expression of deoCABD genes, which encode nucleotide and deoxy ribonucleotide catabolizing enzymes; also negatively regulates the expression of nupG (a transport protein) and tsx (a pore-forming protein)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


:

Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 506.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   1 METRREERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLLGGYIVLEPRSASHYLLSDQKTRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  81 RAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 161 LNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEALT 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 503132291 241 ALAKQHKITLLF 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 506.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   1 METRREERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLLGGYIVLEPRSASHYLLSDQKTRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  81 RAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 161 LNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEALT 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 503132291 241 ALAKQHKITLLF 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-251 1.13e-61

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 194.20  E-value: 1.13e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   5 REERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGyIVLEPRSASHYLLSDQKTRLVEEKRR 81
Cdd:COG1349    3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRrvhGG-AVLVSSAAAEPPFAERETLNAEEKRA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  82 AARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDTL 161
Cdd:COG1349   82 IARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEAL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 162 NHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEALTA 241
Cdd:COG1349  162 RRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELLE 241

                        250
                 ....*....|
gi 503132291 242 LAKQHKITLL 251
Cdd:COG1349  242 ALEEAGVEVI 251
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-233 3.61e-56

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 176.93  E-value: 3.61e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   76 VEEKRRAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPL 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503132291  156 SLEDTLNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDR 233
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 1.09e-11

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 58.39  E-value: 1.09e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 503132291     8 RITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 506.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   1 METRREERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLLGGYIVLEPRSASHYLLSDQKTRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  81 RAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 161 LNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEALT 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 503132291 241 ALAKQHKITLLF 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-251 1.13e-61

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 194.20  E-value: 1.13e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   5 REERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGyIVLEPRSASHYLLSDQKTRLVEEKRR 81
Cdd:COG1349    3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRrvhGG-AVLVSSAAAEPPFAERETLNAEEKRA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  82 AARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDTL 161
Cdd:COG1349   82 IARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEAL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 162 NHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEALTA 241
Cdd:COG1349  162 RRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELLE 241

                        250
                 ....*....|
gi 503132291 242 LAKQHKITLL 251
Cdd:COG1349  242 ALEEAGVEVI 251
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-233 3.61e-56

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 176.93  E-value: 3.61e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   76 VEEKRRAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPL 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503132291  156 SLEDTLNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDR 233
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
PRK09802 PRK09802
DeoR family transcriptional regulator;
7-244 1.59e-16

DeoR family transcriptional regulator;


Pssm-ID: 182086 [Multi-domain]  Cd Length: 269  Bit Score: 76.82  E-value: 1.59e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   7 ERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLE--GPAV-LLGGYIVLEPRSASHYLLSDQKTRL-VEEKRRA 82
Cdd:PRK09802  17 ERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEkqGIAVrAYGGALICDSTTPSVEPSVEDKSALnTAMKRSV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  83 ARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLEDTLN 162
Cdd:PRK09802  97 AKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQ 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 163 HLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRS-PDEALTA 241
Cdd:PRK09802 177 NYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGiPADSLEG 256


                 ...
gi 503132291 242 LAK 244
Cdd:PRK09802 257 LRK 259
PRK10906 PRK10906
DeoR/GlpR family transcriptional regulator;
2-250 7.08e-16

DeoR/GlpR family transcriptional regulator;


Pssm-ID: 182827 [Multi-domain]  Cd Length: 252  Bit Score: 74.89  E-value: 7.08e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   2 ETRREERITQLIqalKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGYIVlePRSASHYLLSDQKTRLVEE 78
Cdd:PRK10906   3 QTQRHDAIIELV---KQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILrhhGGAAL--PSSSVNTPWHDRKATQTEE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  79 KRRAARLAAKLLKPHQMAFFDCGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPLSLE 158
Cdd:PRK10906  78 KERIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 159 DTLNHLCPDIAFYSAAGAHVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDEA 238
Cdd:PRK10906 158 DFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPAS 237

                        250
                 ....*....|..
gi 503132291 239 LTALAKQHKITL 250
Cdd:PRK10906 238 VMQVIEDHHVQL 249
srlR PRK10434
DNA-binding transcriptional repressor;
6-251 2.15e-14

DNA-binding transcriptional repressor;


Pssm-ID: 182457 [Multi-domain]  Cd Length: 256  Bit Score: 70.49  E-value: 2.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   6 EERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLLGGY--IVLEPRSASHYLlsDQKTRL-VEEKRRA 82
Cdd:PRK10434   4 RQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYggVVLNKEESDPPI--DHKTLInTHKKELI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  83 ARLAAKLLKPHQMAFFDCGTTT----PWIidAIDNDIpfTGVCYSLNTFLALQEKPLCRAVL-CGGEFHASNAIFKPLSL 157
Cdd:PRK10434  82 AEAAVSLIHDGDSIILDAGSTVlqmvPLL--SRFNNI--TVMTNSLHIVNALSELDNEQTILmPGGTFRKKSASFHGQLA 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 158 EDTLNHLCPDIAFYSAAGAHVEQGATCFNlEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDRSPDE 237
Cdd:PRK10434 158 ENAFEHFTFDKLFIGTDGIDLNAGVTTFN-EVYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDP 236

                        250
                 ....*....|....
gi 503132291 238 ALTALAKQHKITLL 251
Cdd:PRK10434 237 AFRQALEEKGIEVI 250
HTH_DeoR pfam08220
DeoR-like helix-turn-helix domain;
8-61 2.35e-13

DeoR-like helix-turn-helix domain;


Pssm-ID: 285436 [Multi-domain]  Cd Length: 57  Bit Score: 63.05  E-value: 2.35e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 503132291    8 RITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGYIVLEPR 61
Cdd:pfam08220   1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTrthGGAVSNSST 57
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 1.09e-11

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 58.39  E-value: 1.09e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 503132291     8 RITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
PRK13509 PRK13509
HTH-type transcriptional regulator UlaR;
8-214 1.25e-08

HTH-type transcriptional regulator UlaR;


Pssm-ID: 184100 [Multi-domain]  Cd Length: 251  Bit Score: 54.24  E-value: 1.25e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   8 RITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL----GGYIVLEPRSASHYLLSDQKTRLvEEKRRAA 83
Cdd:PRK13509   6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKkvrnGAEAITQQRPRWTPMNIHQAQNH-DEKVRIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  84 RLAAKLLKPHQMAFFDCGTTTPWIIDA--------IDNDIPftgvcysLNTFLALQEKPlcRAVLCGGEFHASNAIFkpL 155
Cdd:PRK13509  85 KAASQLCNPGESVVINCGSTAFLLGRElcgkpvqiITNYLP-------LANYLIDQEHD--SVIIMGGQYNKSQSIT--L 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 156 SLEDTLNHL-CPDIAFYSAAGAhVEQGATCFNLEELPVKQWALRRAQYHVLVVDHSKFGK 214
Cdd:PRK13509 154 SPQGSENSLyAGHWMFTSGKGL-TADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212
PRK10411 PRK10411
L-fucose operon activator;
1-235 2.79e-08

L-fucose operon activator;


Pssm-ID: 236684 [Multi-domain]  Cd Length: 240  Bit Score: 52.89  E-value: 2.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291   1 METRREERITQLiqaLKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGPAVLL-----GGYIVLEPRSASHYLLSDQKTRL 75
Cdd:PRK10411   1 MKAARQQAIVDL---LLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILrnhgrAKYIHRQNQDSGDPFHIRLKSHY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291  76 VeEKRRAARLAAKLLKPHQMAFFDcGTTTPWIIDAIDNDIPFTGVCYSLNTFLALQEKPLCRAVLCGGEFHASNAIFKPL 155
Cdd:PRK10411  78 A-HKADIAREALAWIEEGMVIALD-ASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNP 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503132291 156 SLEDTLNHLCPDIAFYSAAGahVEQGATCF--NLEELPVKQWALRRAQYHVLVVDHSKFGKVRPARMGALQSFNVIASDR 233
Cdd:PRK10411 156 SLISQLKSLEIDLFIFSCEG--IDSSGALWdsNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDE 233


                 ..
gi 503132291 234 SP 235
Cdd:PRK10411 234 RQ 235
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 3-70 1.54e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 45.07  E-value: 1.54e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503132291   3 TRREERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLEGpavlLGGYIVLEPRSASHYLLSD 70
Cdd:COG2378    1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRE----LGVPIEAERGRGGGYRLRD 64
COG3177 COG3177
Fic family protein [Transcription];
1-46 2.57e-03

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 38.51  E-value: 2.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 503132291   1 METRREERITQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLE 46
Cdd:COG3177  255 ARGRLNERQRKLLELLFENPVLTASELAELLGVSRRTARRDLKDLV 300
FliA COG1191
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ...
 6-40 7.36e-03

DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 440804 [Multi-domain]  Cd Length: 236  Bit Score: 36.73  E-value: 7.36e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 503132291   6 EERiTQLIQALKRSDKLHLKEAAALLGVSEMTVRR 40
Cdd:COG1191  188 PER-ERLVLSLYYFEELTLKEIAEVLGVSESRVSR 221
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 11-61 7.50e-03

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 33.95  E-value: 7.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 503132291   11 QLIQALKRSDKLH-LKEAAALLGVSEMTVRRDLNSLEGpavlLGGYIVLEPR 61
Cdd:pfam08279   2 QILQLLLEARGPIsGQELAEKLGVSRRTIRRDIKILEE----LGVPIEAEPG 49
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
2-46 7.67e-03

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 36.44  E-value: 7.67e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 503132291   2 ETRReeritQLIQALKRSDKLHLKEAAALLGVSEMTVRRDLNSLE 46
Cdd:COG2345   13 PTRR-----RILELLKRAGPVTAAELAEALGLTPNAVRRHLDALE 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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