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methionine ABC transporter permease MetI [Xenorhabdus nematophila]

Protein Classification

methionine ABC transporter permease MetI( domain architecture ID 10793476)

methionine ABC transporter permease MetI is part of the binding-protein-dependent transport system for D-methionine and the toxic methionine analog alpha-methyl-methionine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.07e-119

D-methionine ABC transporter permease MetI;


:

Pssm-ID: 182726  Cd Length: 217  Bit Score: 337.48  E-value: 4.07e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   1 MSEGMILLLTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRILSALVNITRSVPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  81 LIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502950433 161 SAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGGDRLVIAVNRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.07e-119

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 337.48  E-value: 4.07e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   1 MSEGMILLLTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRILSALVNITRSVPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  81 LIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502950433 161 SAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGGDRLVIAVNRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 7.38e-92

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 268.46  E-value: 7.38e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   1 MSEGMILLLTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRILSALVNITRSVPFIILLVWMIPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  81 LIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGY 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502950433 161 SAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGGDRLVIAVNRK 217
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-203 2.27e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 2.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  14 WETLVMTFVSGFFGFVIGLPAGVLLYVTRPGqiienstLYRILSALVNITRSVPFIILLVWMIPFTRLIVGTSIGLQ--- 90
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGK-------LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  91 AAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502950433 171 GLGQIGYQYGYIGYDAVVMNTVLALLVILVFLI 203
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-217 3.18e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 3.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   49 NSTLYRILSALVNITRSVP-FIILLVWMIPFTRLIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  128 ATPIQIVKKILVPEALPSLINAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGG 207
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|
gi 502950433  208 DRLVIAVNRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 3.64e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 49.08  E-value: 3.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433    9 LTKGVWETLVMTFVSGFFGFVIGLPAGVLlyvtRPGQIIENSTLYRILSALVNITRSVPfiiLLVWMIPFtrlIVGTSIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIF---VAAVGLG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 502950433   89 LQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLI 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.07e-119

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 337.48  E-value: 4.07e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   1 MSEGMILLLTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRILSALVNITRSVPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  81 LIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502950433 161 SAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGGDRLVIAVNRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 7.38e-92

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 268.46  E-value: 7.38e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   1 MSEGMILLLTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRILSALVNITRSVPFIILLVWMIPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  81 LIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGY 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502950433 161 SAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGGDRLVIAVNRK 217
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 13-159 3.67e-13

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 65.46  E-value: 3.67e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  13 VWETLVMTFVSGFFGFVIGLPAGVLLYVTRPgqiienstLYRILSALVNITRSVPFIILLVWMIPFTrlivgtSIGLQAA 92
Cdd:COG1174   20 LLEHLLLVLLALLIALLIAVPLGILITRRRR--------LAGLVLGVANILQTIPSLALLALLIPLL------GIGPAPA 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502950433  93 IVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALP---------SLINAATITLITLVG 159
Cdd:COG1174   86 IIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPvilagirtaAVQNIGTATLAALIG 161
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-203 2.27e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 2.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  14 WETLVMTFVSGFFGFVIGLPAGVLLYVTRPGqiienstLYRILSALVNITRSVPFIILLVWMIPFTRLIVGTSIGLQ--- 90
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGK-------LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  91 AAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|...
gi 502950433 171 GLGQIGYQYGYIGYDAVVMNTVLALLVILVFLI 203
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 8-158 2.48e-12

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 63.56  E-value: 2.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   8 LLTKGVWETLVMTFVSGFFGFVIGLPAGVllyvtrpGQIIENSTLYRILSALVNITRSVPFIILLVW---MIPFtrliVG 84
Cdd:COG0765   14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502950433  85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLV 158
Cdd:COG0765   83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLL 157
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 9-154 8.11e-11

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 59.78  E-value: 8.11e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   9 LTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTRpgqiiensTLYRILSALVNITRSVPFIILlvwmIPFTRLIVGtsIG 88
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR--------LLRRLLDPLLVFLRPIPPLAL----APLLILWFG--IG 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502950433  89 LQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITL 154
Cdd:COG0600  125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIAL 190
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 11-148 1.92e-09

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 55.86  E-value: 1.92e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  11 KGVWETLVMTFVSGFFGFVIGLPAGVLlyVTRPgqIIENSTLYRILSALVNITRSVPfiiLLVWMIPFTRlIVGtsIGLQ 90
Cdd:COG3639   51 SALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AVG--LGPF 120

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502950433  91 AAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLIN 148
Cdd:COG3639  121 AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-217 3.18e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 3.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   49 NSTLYRILSALVNITRSVP-FIILLVWMIPFTRLIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  128 ATPIQIVKKILVPEALPSLINAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYDAVVMNTVLALLVILVFLIQLGG 207
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|
gi 502950433  208 DRLVIAVNRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 12-150 1.95e-08

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 53.17  E-value: 1.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  12 GVWETLVMTFVSGFFGFVIGLPAGVL--LYVTRpgqiIENSTLYRILSALVNITRSVPFIIL----LVWMIPFTRLIV-- 83
Cdd:COG0573   74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502950433  84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAA 150
Cdd:COG0573  150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-155 2.89e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.16  E-value: 2.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  13 VWETLVMTFVSGFFGFVIGLPAGVLLYVTR-PGQiienstlyRILSALVNITRSVP-FIILLVWMI---------PFTRL 81
Cdd:COG1178   56 LGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR--------RLLRWLLLLPLALPpYVVALAWIAlfgpngllnTLLRA 127

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502950433  82 IVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLI 155
Cdd:COG1178  128 LFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 3.64e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 49.08  E-value: 3.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433    9 LTKGVWETLVMTFVSGFFGFVIGLPAGVLlyvtRPGQIIENSTLYRILSALVNITRSVPfiiLLVWMIPFtrlIVGTSIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIF---VAAVGLG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 502950433   89 LQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLI 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 16-153 7.73e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 48.21  E-value: 7.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  16 TLVMTFVSGFFGFVIGLPAGVLLYVTR-PGQiienstlyRILSALVNITRSVP--------------------FIILLVW 74
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVLVRYRfPGK--------RLVDALVDLPFALPtavagiallllfgpngwlgqLLAPLGI 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502950433  75 MIPFTRLivgtsiglqAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATIT 153
Cdd:COG0555  131 KVAFTPL---------GIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 17-156 1.19e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 1.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  17 LVMTFVSGFFGFVIGLPAGVLlyvtrpGQIIEnstlyRILSALVNITRSVPFIILLVWMIpftrLIVGTSIGLqaAIVPL 96
Cdd:COG1173   86 LLAVLIALVIGVLLGLLAGYF------GGWVD-----AVLMRLVDVLLAFPSLLLAIALV----AVLGPGLLN--VILAL 148

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502950433  97 TVGAAPFIARMVENALLEI-PSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLIT 156
Cdd:COG1173  149 GLTGWPGYARLVRAQVLSLrEREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-159 1.67e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 47.85  E-value: 1.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  13 VWETLVMTFVSGFFGFVIGLPAGVLLYVTRpgqiienSTLYRILSALVNITRSVPFIIL-LVWMIPFTRLIVGTSIGLQA 91
Cdd:COG1178  340 LLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLYGTLA 412

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502950433  92 AIV-PLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVG 159
Cdd:COG1178  413 ILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 9-156 3.55e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 46.26  E-value: 3.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   9 LTKGVWETLVMTFVSGFFGFVIGLPAGVLLYVTR-PGQiienstlyRILSALVNITRSVPFIILLVWMIPFTRLIvGTSI 87
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRfRGR--------RLLLALLLLPLVVPGIVLGVALLLLFSAL-GLSG 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502950433  88 GLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLIT 156
Cdd:COG1177  130 GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 16-160 1.06e-05

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 45.09  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  16 TLVMTFVSGFFGFVIGLPAG-VLLYVTRPGQiienstlyRILSALVNITRSVPFIILlvwMIPFTRLIVGTSIG--LQAA 92
Cdd:COG0395   79 SLIVAVVSTVLSLLLSSLAAyALARFRFRGR--------KLLFLLILATLMIPGQVL---LIPLYLLFRQLGLLntYWGL 147

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502950433  93 IVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLinaATITLITLVGY 160
Cdd:COG0395  148 ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPAL---ATVAIFTFIGA 212
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 8-154 1.63e-05

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 44.28  E-value: 1.63e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   8 LLTKGVWETLVMTFVSGFFGFVIGLPAGVLlyvtrpgQIIENSTLYRILSALVNITRSVPfIILLVWMIPFTRLIVGTSI 87
Cdd:PRK09494  14 LLLEGAKMTLWISVLGLAGGLVIGLLAGFA-------RAYGGWIANHIALVFIELIRGTP-IVVQVMFIYFALPMAFNDL 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502950433  88 ---GLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEAL----PSLINAATITL 154
Cdd:PRK09494  86 ridPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALrrmlPPLGNQWIISI 159
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 66-154 5.29e-05

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 43.02  E-value: 5.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   66 VPFI--ILLVWMIPFTRLIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEAL 143
Cdd:TIGR02138 126 VPFLkpHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAAR 205

                          90
                  ....*....|.
gi 502950433  144 PSLINAATITL 154
Cdd:TIGR02138 206 SGIVGAVVLGL 216
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
16-155 8.29e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 42.77  E-value: 8.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  16 TLVMTFVSGFFGFVIGLPAGVLLyvtrpgqiIENSTLYRILSALVNITRSVPfiiLLVWMIPFTRLIvgtSIGLQAAIVP 95
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWL--------ARSPRAAKIIRPLLDAMQTTP---AFVYLVPIVMLF---GIGNVPGVVV 214

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  96 LTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLI 155
Cdd:PRK10952 215 TIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-155 1.38e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 41.91  E-value: 1.38e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 502950433 101 APFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLI 155
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 16-159 1.38e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 41.98  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  16 TLVMTFVSGFFGFVIGLPAGVLLYVTRpgqiieNSTLYRILSALVNITRSVP---FIILLVW-------------MIPFT 79
Cdd:COG0601   98 TLELALLALLLALLIGIPLGILAALRR------GSWLDRLITVLALLGISIPsfwLGLLLILlfavklgwlpvsgRVSPW 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  80 RLIVGtsiGLQAAIVP---LTVGAAPFIARMVENALLE-IPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLI 155
Cdd:COG0601  172 EDFLD---ALRHLILPaltLALGSLAGIARLTRSSMLEvLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLG 248


                 ....
gi 502950433 156 TLVG 159
Cdd:COG0601  249 GLLG 252
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 102-159 2.45e-04

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 40.90  E-value: 2.45e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502950433 102 PFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLVG 159
Cdd:COG1176  167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
PRK15100 PRK15100
cystine ABC transporter permease;
8-158 1.12e-03

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 38.96  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433   8 LLTKGVWETLVMTFVSGFFGFVIGLpagvLLYVTRPGQIIENSTLYRILsalVNITRSVPFIILLvWMIPFTRLIVGTSI 87
Cdd:PRK15100  14 FLLKGAGYTLQLSIGGMFFGLLLGF----ILALMRLSPIWPVRWLARFY---VSIFRGTPLIAQL-FMIYYGLPQFGIEL 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502950433  88 G-LQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATITLITLV 158
Cdd:PRK15100  86 DpIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLV 157
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
13-147 1.72e-03

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 38.27  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  13 VWETLVMTFVSGFFGFVIGLPAGVLLYVTRPGQIIENSTLYRilsALVNITRSVPFIILLVW---MIP-FTRLIVG---- 84
Cdd:PRK15107  16 LLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAK---AYVNVFRSIPLVMVLLWfylIVPgFLQNVLGlspk 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502950433  85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLI 147
Cdd:PRK15107  93 TDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
74-159 1.73e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 38.58  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502950433  74 WMIPFTRLIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATIT 153
Cdd:PRK10971 128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204


                 ....*.
gi 502950433 154 LITLVG 159
Cdd:PRK10971 205 FTRSLG 210
cysT CHL00187
sulfate transport protein; Provisional
 102-153 3.65e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 37.30  E-value: 3.65e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 502950433 102 PFIARMVENALLEIPSGLIEAARAMGATPIQIVKKILVPEALPSLINAATIT 153
Cdd:CHL00187 150 PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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