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Conserved domains on  [gi|502662250|ref|WP_012898265|]
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MULTISPECIES: membrane protein insertion efficiency factor YidD [Lactococcus]

Protein Classification

membrane protein insertion efficiency factor YidD( domain architecture ID 10485334)

membrane protein insertion efficiency factor YidD may be involved in the insertion of integral membrane proteins into the membrane

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 2-68 2.34e-38

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


:

Pssm-ID: 460342  Cd Length: 67  Bit Score: 122.10  E-value: 2.34e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502662250   2 KKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLV 68
Cdd:pfam01809  1 KKLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 2-68 2.34e-38

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 122.10  E-value: 2.34e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502662250   2 KKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLV 68
Cdd:pfam01809  1 KKLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 1-68 6.41e-38

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 121.00  E-value: 6.41e-38
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLV 68
Cdd:COG0759   4 MKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
1-86 1.18e-35

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 116.08  E-value: 1.18e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPDHFSLRRNwAE 80
Cdd:PRK14379  1 MRKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPVPDYFTLRRN-PH 79


                ....*.
gi 502662250 81 PEKEED 86
Cdd:PRK14379 80 PERYED 85
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 5-69 1.39e-25

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 90.21  E-value: 1.39e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502662250   5 LVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:TIGR00278  1 LIALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVP 65
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 2-68 2.34e-38

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 122.10  E-value: 2.34e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502662250   2 KKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLV 68
Cdd:pfam01809  1 KKLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 1-68 6.41e-38

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 121.00  E-value: 6.41e-38
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLV 68
Cdd:COG0759   4 MKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
1-86 1.18e-35

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 116.08  E-value: 1.18e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPDHFSLRRNwAE 80
Cdd:PRK14379  1 MRKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPVPDYFTLRRN-PH 79


                ....*.
gi 502662250 81 PEKEED 86
Cdd:PRK14379 80 PERYED 85
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 5-69 1.39e-25

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 90.21  E-value: 1.39e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502662250   5 LVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:TIGR00278  1 LIALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVP 65
PRK14370 PRK14370
hypothetical protein; Provisional
 1-69 4.00e-24

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 87.60  E-value: 4.00e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250   1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14370   9 LYKLLLAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGIDFVP 77
PRK14382 PRK14382
hypothetical protein; Provisional
 1-66 1.52e-23

hypothetical protein; Provisional


Pssm-ID: 172858  Cd Length: 68  Bit Score: 84.82  E-value: 1.52e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYD 66
Cdd:PRK14382  1 MKRLLIKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGVD 66
PRK14389 PRK14389
membrane protein insertion efficiency factor YidD;
1-69 1.29e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184656  Cd Length: 98  Bit Score: 83.45  E-value: 1.29e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14389  2 MRRLLMALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGHDPVP 70
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
5-76 3.30e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 81.93  E-value: 3.30e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502662250  5 LVKAVHGYQRWISPALP-PACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPDHFSLRR 76
Cdd:PRK14383  8 LVRAVRWYQRVLSPRKPaPTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDPVPEHFPARR 80
PRK14372 PRK14372
membrane protein insertion efficiency factor YidD;
5-84 6.91e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172848  Cd Length: 97  Bit Score: 81.52  E-value: 6.91e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502662250  5 LVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPDHFSL--RRNWAEPE 82
Cdd:PRK14372  1 MIRGIRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGIDDVPQRYSLfyRCSWSKAH 80


                ..
gi 502662250 83 KE 84
Cdd:PRK14372 81 EE 82
PRK14388 PRK14388
membrane protein insertion efficiency factor YidD;
1-69 1.45e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172864  Cd Length: 82  Bit Score: 74.93  E-value: 1.45e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14388  1 MTRILLLLLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDTVP 69
PRK14369 PRK14369
membrane protein insertion efficiency factor YidD;
1-78 4.25e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184650  Cd Length: 119  Bit Score: 75.10  E-value: 4.25e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502662250   1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPD------HFSL 74
Cdd:PRK14369   1 MKYPLLALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGVDHVPPrkrprwHEML 80


                 ....
gi 502662250  75 RRNW 78
Cdd:PRK14369  81 RNAW 84
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
1-69 1.03e-18

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 73.53  E-value: 1.03e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250   1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14386   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
PRK14380 PRK14380
hypothetical protein; Provisional
 1-66 4.03e-18

hypothetical protein; Provisional


Pssm-ID: 184654  Cd Length: 81  Bit Score: 71.52  E-value: 4.03e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYD 66
Cdd:PRK14380  8 LRQIVCLPIKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYD 73
PRK14391 PRK14391
membrane protein insertion efficiency factor YidD;
1-69 1.35e-17

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172867  Cd Length: 84  Bit Score: 70.06  E-value: 1.35e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14391  1 MNQFVIQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPLSQGFDDPLP 69
PRK14373 PRK14373
hypothetical protein; Provisional
 1-69 1.31e-16

hypothetical protein; Provisional


Pssm-ID: 172849  Cd Length: 73  Bit Score: 67.34  E-value: 1.31e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14373  5 LSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGHDPVP 73
PRK14378 PRK14378
membrane protein insertion efficiency factor YidD;
2-69 4.95e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237696  Cd Length: 103  Bit Score: 66.90  E-value: 4.95e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502662250   2 KKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14378  13 RNAAIAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWAEGGIDDVP 80
PRK14371 PRK14371
hypothetical protein; Provisional
 1-75 2.77e-15

hypothetical protein; Provisional


Pssm-ID: 172847  Cd Length: 81  Bit Score: 64.18  E-value: 2.77e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502662250  1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPDHFSLR 75
Cdd:PRK14371  1 MRKLALVPIQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWNPGGYDPVPPAPTSR 75
PRK14375 PRK14375
membrane protein insertion efficiency factor YidD;
12-69 9.82e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172851  Cd Length: 70  Bit Score: 62.70  E-value: 9.82e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250 12 YQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPG-YDLVP 69
Cdd:PRK14375  6 YRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLSKRDyYDLVP 64
PRK14381 PRK14381
membrane protein insertion efficiency factor YidD;
9-69 3.29e-14

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172857  Cd Length: 103  Bit Score: 62.18  E-value: 3.29e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502662250   9 VHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14381  19 IHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRIGKCGPWHPGGIDLVP 79
PRK14387 PRK14387
membrane protein insertion efficiency factor YidD;
8-69 3.52e-14

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184655  Cd Length: 84  Bit Score: 61.50  E-value: 3.52e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502662250  8 AVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14387 11 GLRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYDPPP 72
PRK14390 PRK14390
hypothetical protein; Provisional
 12-70 6.17e-14

hypothetical protein; Provisional


Pssm-ID: 172866  Cd Length: 63  Bit Score: 60.40  E-value: 6.17e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 502662250 12 YQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPD 70
Cdd:PRK14390  5 YQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDPVPD 63
PRK14374 PRK14374
membrane protein insertion efficiency factor YidD;
1-64 2.21e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237694  Cd Length: 118  Bit Score: 60.47  E-value: 2.21e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502662250   1 MKKVLVKAVHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPG 64
Cdd:PRK14374   9 LSAIFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFCSGG 72
PRK14377 PRK14377
membrane protein insertion efficiency factor YidD;
9-88 4.36e-11

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172853  Cd Length: 104  Bit Score: 54.00  E-value: 4.36e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502662250   9 VHGYQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPD---HFSLRRNWAEPEKEE 85
Cdd:PRK14377  14 VHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGIDLVPRtsvEEYLSSPTPLAESPD 93


                 ...
gi 502662250  86 DSN 88
Cdd:PRK14377  94 DRT 96
PRK14384 PRK14384
hypothetical protein; Provisional
 23-70 6.16e-11

hypothetical protein; Provisional


Pssm-ID: 172860  Cd Length: 56  Bit Score: 52.37  E-value: 6.16e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 502662250 23 ACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVPD 70
Cdd:PRK14384  3 SCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPE 50
PRK14376 PRK14376
membrane protein insertion efficiency factor YidD;
24-69 1.66e-10

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237695  Cd Length: 176  Bit Score: 54.19  E-value: 1.66e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 502662250  24 CRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14376  64 CRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYDPVP 109
PRK14385 PRK14385
membrane protein insertion efficiency factor YidD;
12-69 3.24e-07

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172861  Cd Length: 96  Bit Score: 44.04  E-value: 3.24e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 502662250 12 YQRWISPALPPACRYYPTCSNYMIQAIEKHGPAKGLAMGTARILRCHPFCQPGYDLVP 69
Cdd:PRK14385 21 YQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFKGGNESLP 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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