NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|502662201|ref|WP_012898217|]
View 

MULTISPECIES: DUF1858 domain-containing protein [Lactococcus]

Protein Classification

DUF1858 domain-containing protein( domain architecture ID 10556756)

DUF1858 domain-containing protein may contain a hybrid cluster protein-associated redox disulfide

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1858 pfam08984
Domain of unknown function (DUF1858); This domain has no known function. It is found in ...
 9-62 1.27e-14

Domain of unknown function (DUF1858); This domain has no known function. It is found in various hypothetical bacterial proteins.


:

Pssm-ID: 462648  Cd Length: 57  Bit Score: 61.01  E-value: 1.27e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502662201   9 KLYDLATEHPEIIDLMDGLGFHEIKMPGMLQTAGRMATIPMGAKMKHIDWDKIV 62
Cdd:pfam08984  4 TIGELLEKYPELIEILVELGFHCLGCPILRKTVARFETLEQAAKVHGIDLDELI 57
 
Name Accession Description Interval E-value
DUF1858 pfam08984
Domain of unknown function (DUF1858); This domain has no known function. It is found in ...
 9-62 1.27e-14

Domain of unknown function (DUF1858); This domain has no known function. It is found in various hypothetical bacterial proteins.


Pssm-ID: 462648  Cd Length: 57  Bit Score: 61.01  E-value: 1.27e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502662201   9 KLYDLATEHPEIIDLMDGLGFHEIKMPGMLQTAGRMATIPMGAKMKHIDWDKIV 62
Cdd:pfam08984  4 TIGELLEKYPELIEILVELGFHCLGCPILRKTVARFETLEQAAKVHGIDLDELI 57
 
Name Accession Description Interval E-value
DUF1858 pfam08984
Domain of unknown function (DUF1858); This domain has no known function. It is found in ...
 9-62 1.27e-14

Domain of unknown function (DUF1858); This domain has no known function. It is found in various hypothetical bacterial proteins.


Pssm-ID: 462648  Cd Length: 57  Bit Score: 61.01  E-value: 1.27e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 502662201   9 KLYDLATEHPEIIDLMDGLGFHEIKMPGMLQTAGRMATIPMGAKMKHIDWDKIV 62
Cdd:pfam08984  4 TIGELLEKYPELIEILVELGFHCLGCPILRKTVARFETLEQAAKVHGIDLDELI 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH