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Conserved domains on  [gi|502618711|ref|WP_012855578|]
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50S ribosomal protein L31 [Metamycoplasma hominis]

Protein Classification

50S ribosomal protein L31( domain architecture ID 10011073)

50S ribosomal protein L31 binds the 23S rRNA in a Zn(II)-dependent manner

Gene Symbol:  rpmE
Gene Ontology:  GO:0006412|GO:0003735|GO:0046872|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-71 1.12e-30

50S ribosomal protein L31; Reviewed


:

Pssm-ID: 234576  Cd Length: 72  Bit Score: 101.92  E-value: 1.12e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711  1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNKILEKSHKKN 71
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCS-CGNVFETRSTLGKdeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKKK 72
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-71 1.12e-30

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 101.92  E-value: 1.12e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711  1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNKILEKSHKKN 71
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCS-CGNVFETRSTLGKdeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKKK 72
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-62 1.33e-26

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 91.71  E-value: 1.33e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711   1 MQKDIHPKYNQIKAVCSsCNSTIEFGST-ADKVTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:pfam01197  1 MKKGIHPEYREVTVTCT-CGNTFLTRSTeYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNK 62
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-62 1.13e-24

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 86.74  E-value: 1.13e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502618711  1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:COG0254   1 MKKGIHPEYREVVVTCS-CGNEFLTRSTLEYpeIKVDVCSACHPFYTGKQKIVDTAGRVEKFNK 63
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-62 2.55e-20

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 75.79  E-value: 2.55e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502618711   1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCT-CGNVFTTRSTWGKetLNLDICSKCHPFYTGKQKIVDTGGRVDKFNK 63
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-71 1.12e-30

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 101.92  E-value: 1.12e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711  1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNKILEKSHKKN 71
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCS-CGNVFETRSTLGKdeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKKK 72
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-62 1.33e-26

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 91.71  E-value: 1.33e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711   1 MQKDIHPKYNQIKAVCSsCNSTIEFGST-ADKVTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:pfam01197  1 MKKGIHPEYREVTVTCT-CGNTFLTRSTeYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNK 62
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-62 1.13e-24

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 86.74  E-value: 1.13e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502618711  1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:COG0254   1 MKKGIHPEYREVVVTCS-CGNEFLTRSTLEYpeIKVDVCSACHPFYTGKQKIVDTAGRVEKFNK 63
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-62 2.55e-20

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 75.79  E-value: 2.55e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502618711   1 MQKDIHPKYNQIKAVCSsCNSTIEFGSTADK--VTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCT-CGNVFTTRSTWGKetLNLDICSKCHPFYTGKQKIVDTGGRVDKFNK 63
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-62 1.87e-14

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 61.12  E-value: 1.87e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502618711  1 MQKDIHPKYNQIKAVCssCNSTI-----EFGSTADKVTLDVCSNCHAFYT-GNRTDVKARGRVERFNK 62
Cdd:PRK00528  1 MKKDIHPDYHPIKVVM--TDGTEyetrsTWGKTGPELRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNK 66
rpmE2 PRK01678
type B 50S ribosomal protein L31;
1-62 9.87e-13

type B 50S ribosomal protein L31;


Pssm-ID: 234969  Cd Length: 87  Bit Score: 57.20  E-value: 9.87e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 502618711  1 MQKDIHPKYNQI---------KAVCSSC---NSTIEF--GSTADKVTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:PRK01678  1 MKKGIHPEYRPVvfhdtstgfKFLTGSTittDETIEWedGKTYPLVKVEISSASHPFYTGKQKFVDTEGRVEKFNK 76
rpl31 CHL00136
ribosomal protein L31; Validated
 1-62 1.04e-09

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 48.88  E-value: 1.04e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502618711  1 MQKDIHPK-YNQIKAVCSScNSTIEFGSTADKVTLDVCSNCHAFYTGNRTDVKARGRVERFNK 62
Cdd:CHL00136  2 PKKNIHPQwFPETKVYCDG-QLVMTVGSTKPELNVDIWSGNHPFYTGSQKIIDTEGRVERFMK 63
NMD3 COG1499
NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and ...
 12-67 6.57e-04

NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441108  Cd Length: 352  Bit Score: 35.64  E-value: 6.57e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502618711  12 IKAVCSSCN-STIEFGSTADKVTLDVCSNCHAFYTGNR-TDVKARGRVERFNKILEKS 67
Cdd:COG1499   17 VDGLCKDCYlEEFPLVDAPDRVEVTVCPRCGAVRRGGRwVDPGAEDYEEVAIEAVEDA 74
COG4332 COG4332
Uncharacterized conserved protein, DUF1062 domain [Function unknown];
5-68 1.09e-03

Uncharacterized conserved protein, DUF1062 domain [Function unknown];


Pssm-ID: 443473  Cd Length: 196  Bit Score: 34.94  E-value: 1.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502618711   5 IHPK-YNQIKAVCSSCNSTIEFGST------ADKVTLDV-----CSNCHafYTGNRTdVKARGRVERFNK-ILEKSH 68
Cdd:COG4332    9 VTPTgLPRIKRRCSKCGSKREFRCSgkfrvnANGKLLDVwliykCTKCD--YTWNRT-IFERVNVRSIDPeLLERFH 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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