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Conserved domains on  [gi|501902690|ref|WP_012666160|]
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BBA14 family lipoprotein [Borreliella burgdorferi]

Protein Classification

Borrelia_orfD domain-containing protein( domain architecture ID 10503240)

Borrelia_orfD domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Borrelia_orfD pfam02999
Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open ...
 28-127 1.87e-52

Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D. This family corresponds to Orf-D. The putative product of this gene has no known function.


:

Pssm-ID: 308571  Cd Length: 100  Bit Score: 160.68  E-value: 1.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501902690   28 SLPQKPTLTNKEDIENLMLDEAELFRYSTALNVWLLTVKSYVIKYYPNDKFPMFETFDPVFGDENETKETNILKNRIAYY 107
Cdd:pfam02999   1 NLPEEPKLPIIEDIENLAKDEAELFEYSMALNTFLAKTKSKVIKYYNDDKFPEFENFDLSFGDDEGSIEANILKHNINIY 80

                          90       100
                  ....*....|....*....|
gi 501902690  108 NRYIEKTEPIVFRCYKKYSR 127
Cdd:pfam02999  81 LEYIEKTEPIAEGCYKKYSQ 100
 
Name Accession Description Interval E-value
Borrelia_orfD pfam02999
Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open ...
 28-127 1.87e-52

Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D. This family corresponds to Orf-D. The putative product of this gene has no known function.


Pssm-ID: 308571  Cd Length: 100  Bit Score: 160.68  E-value: 1.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501902690   28 SLPQKPTLTNKEDIENLMLDEAELFRYSTALNVWLLTVKSYVIKYYPNDKFPMFETFDPVFGDENETKETNILKNRIAYY 107
Cdd:pfam02999   1 NLPEEPKLPIIEDIENLAKDEAELFEYSMALNTFLAKTKSKVIKYYNDDKFPEFENFDLSFGDDEGSIEANILKHNINIY 80

                          90       100
                  ....*....|....*....|
gi 501902690  108 NRYIEKTEPIVFRCYKKYSR 127
Cdd:pfam02999  81 LEYIEKTEPIAEGCYKKYSQ 100
 
Name Accession Description Interval E-value
Borrelia_orfD pfam02999
Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open ...
 28-127 1.87e-52

Borrelia orf-D family; Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D. This family corresponds to Orf-D. The putative product of this gene has no known function.


Pssm-ID: 308571  Cd Length: 100  Bit Score: 160.68  E-value: 1.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501902690   28 SLPQKPTLTNKEDIENLMLDEAELFRYSTALNVWLLTVKSYVIKYYPNDKFPMFETFDPVFGDENETKETNILKNRIAYY 107
Cdd:pfam02999   1 NLPEEPKLPIIEDIENLAKDEAELFEYSMALNTFLAKTKSKVIKYYNDDKFPEFENFDLSFGDDEGSIEANILKHNINIY 80

                          90       100
                  ....*....|....*....|
gi 501902690  108 NRYIEKTEPIVFRCYKKYSR 127
Cdd:pfam02999  81 LEYIEKTEPIAEGCYKKYSQ 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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