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Conserved domains on  [gi|501559736|ref|WP_012564232|]
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general stress protein [Afipia carboxidovorans]

Protein Classification

general stress protein( domain architecture ID 10007922)

general stress protein similar to Bacillus subtilis glucose starvation-inducible protein B (GsiB) that is involved in an adaptive response to nutrient deprivation other than sporulation

Gene Ontology:  GO:0006950
PubMed:  21421783

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
18-94 1.66e-07

General stress protein YciG, contains tandem KGG domains [General function prediction only];


:

Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.29  E-value: 1.66e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501559736 18 NIAAKGGQSVpdEKRSFSQDRELAAEAGRKGGEHShggqqqqsggssgqqggqrggSGNFANDRQRASDAGRRGGQH 94
Cdd:COG3729   3 DTAKRGGSGV--EKGNFAKDRERASEAGRKGGQHS---------------------GGNFANDPERASEAGRKGGQH 56
 
Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
18-94 1.66e-07

General stress protein YciG, contains tandem KGG domains [General function prediction only];


Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.29  E-value: 1.66e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501559736 18 NIAAKGGQSVpdEKRSFSQDRELAAEAGRKGGEHShggqqqqsggssgqqggqrggSGNFANDRQRASDAGRRGGQH 94
Cdd:COG3729   3 DTAKRGGSGV--EKGNFAKDRERASEAGRKGGQHS---------------------GGNFANDPERASEAGRKGGQH 56
 
Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
18-94 1.66e-07

General stress protein YciG, contains tandem KGG domains [General function prediction only];


Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.29  E-value: 1.66e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501559736 18 NIAAKGGQSVpdEKRSFSQDRELAAEAGRKGGEHShggqqqqsggssgqqggqrggSGNFANDRQRASDAGRRGGQH 94
Cdd:COG3729   3 DTAKRGGSGV--EKGNFAKDRERASEAGRKGGQHS---------------------GGNFANDPERASEAGRKGGQH 56
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
6-53 4.28e-04

General stress protein YciG, contains tandem KGG domains [General function prediction only];


Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 35.43  E-value: 4.28e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 501559736  6 RGFAGMDQDKQRNIAAKGGQSVPdekRSFSQDRELAAEAGRKGGEHSH 53
Cdd:COG3729  14 KGNFAKDRERASEAGRKGGQHSG---GNFANDPERASEAGRKGGQHSH 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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