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Conserved domains on  [gi|501408763|ref|WP_012440329|]
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phage tail protein [Erwinia tasmaniensis]

Protein Classification

phage tail protein( domain architecture ID 10536432)

phage tail protein such as Escherichia virus P2 tail completion protein R (GpR), which is essential for stable head joining

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-119 1.82e-55

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


:

Pssm-ID: 429177  Cd Length: 131  Bit Score: 169.75  E-value: 1.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408763    1 MNKPQSLRSALNKAVAYVRDNPDKLHLFVDNGSLVATGASSMSWEYRYTLNVVIEDFSGDQNLLMAPVLLWLSASQPDAI 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 501408763   81 NNPALREKLFTFEVDILRNDVCDISMSLQLTERVLVSTD 119
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKED 119
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-119 1.82e-55

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 169.75  E-value: 1.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408763    1 MNKPQSLRSALNKAVAYVRDNPDKLHLFVDNGSLVATGASSMSWEYRYTLNVVIEDFSGDQNLLMAPVLLWLSASQPDAI 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 501408763   81 NNPALREKLFTFEVDILRNDVCDISMSLQLTERVLVSTD 119
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKED 119
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-119 1.82e-55

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 169.75  E-value: 1.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501408763    1 MNKPQSLRSALNKAVAYVRDNPDKLHLFVDNGSLVATGASSMSWEYRYTLNVVIEDFSGDQNLLMAPVLLWLSASQPDAI 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 501408763   81 NNPALREKLFTFEVDILRNDVCDISMSLQLTERVLVSTD 119
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKED 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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