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Conserved domains on  [gi|501257055|ref|WP_012300073|]
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MULTISPECIES: DUF3618 domain-containing protein [Clavibacter]

Protein Classification

DUF3618 domain-containing protein( domain architecture ID 10574054)

DUF3618 domain-containing protein similar to Sinorhizobium meliloti nutrient deprivation-induced protein NdiB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3618 pfam12277
Protein of unknown function (DUF3618); This domain family is found in bacteria, and is ...
 11-57 2.09e-05

Protein of unknown function (DUF3618); This domain family is found in bacteria, and is approximately 50 amino acids in length.


:

Pssm-ID: 432447 [Multi-domain]  Cd Length: 47  Bit Score: 38.17  E-value: 2.09e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 501257055  11 PRSRAELKLDIQHTREEISATLDALEAKLNVRRRAKDGIADLRRRIR 57
Cdd:pfam12277  1 SRDPEEIEREIERTRAELAETVDELAARADPKRLADRAKERVRARVA 47
 
Name Accession Description Interval E-value
DUF3618 pfam12277
Protein of unknown function (DUF3618); This domain family is found in bacteria, and is ...
 11-57 2.09e-05

Protein of unknown function (DUF3618); This domain family is found in bacteria, and is approximately 50 amino acids in length.


Pssm-ID: 432447 [Multi-domain]  Cd Length: 47  Bit Score: 38.17  E-value: 2.09e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 501257055  11 PRSRAELKLDIQHTREEISATLDALEAKLNVRRRAKDGIADLRRRIR 57
Cdd:pfam12277  1 SRDPEEIEREIERTRAELAETVDELAARADPKRLADRAKERVRARVA 47
 
Name Accession Description Interval E-value
DUF3618 pfam12277
Protein of unknown function (DUF3618); This domain family is found in bacteria, and is ...
 11-57 2.09e-05

Protein of unknown function (DUF3618); This domain family is found in bacteria, and is approximately 50 amino acids in length.


Pssm-ID: 432447 [Multi-domain]  Cd Length: 47  Bit Score: 38.17  E-value: 2.09e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 501257055  11 PRSRAELKLDIQHTREEISATLDALEAKLNVRRRAKDGIADLRRRIR 57
Cdd:pfam12277  1 SRDPEEIEREIERTRAELAETVDELAARADPKRLADRAKERVRARVA 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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