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Conserved domains on  [gi|501177480|ref|WP_012220787|]
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FAD-dependent oxidoreductase [Coxiella burnetii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pyr_redox_2 super family cl39093
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 10-46 4.47e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


The actual alignment was detected with superfamily member pfam07992:

Pssm-ID: 476868 [Multi-domain]  Cd Length: 301  Bit Score: 48.47  E-value: 4.47e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLG 46
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPY 37
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 11-87 5.61e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


:

Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 45.08  E-value: 5.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501177480   11 DIVVIGAGFAGFYTAQELSHARYKVALLEiGDGLLGKTSSSYNecYK-LHTGVHYAGHPQTAIQCLkDSVKFAREFPE 87
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLE-RGDDPGSGASGRN--AGlIHPGLRYLEPSELARLAL-EALDLWEELEE 74
DadA super family cl43231
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
9-382 3.84e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


The actual alignment was detected with superfamily member COG0665:

Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 42.58  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480   9 TYDIVVIGAGFAGFYTAQELSHARYKVALLEigDGLLGKTSSSYNecyklhTGV---HYAGHPQTAIQCL-KDSVKFARE 84
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLE--RGRPGSGASGRN------AGQlrpGLAALADRALVRLaREALDLWRE 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480  85 FPEyilGYEDDTLPWRHGRHYLmsnsLFDEETIKKtcslLQKTYAELvqqdpanKVFGEPAhfiRYLKASEYPYVAKTIA 164
Cdd:COG0665   74 LAA---ELGIDCDFRRTGVLYL----ARTEAELAA----LRAEAEAL-------RALGLPV---ELLDAAELREREPGLG 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 165 QPDmpnenadahVILGIETPES-QINIVK----LRRYAEREishfdQLTFATQHEVKNIQFAPDsldyQVEAydwLEGKT 239
Cdd:COG0665  133 SPD---------YAGGLYDPDDgHVDPAKlvraLARAARAA-----GVRIREGTPVTGLEREGG----RVTG---VRTER 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 240 NIIRTKGVVNC--AWqnIETLDRGLGYYVPdgrLVRLKVSLLVcLPEILRLINTCIFFaGPHCSVTNLGDGTAVI--TYE 315
Cdd:COG0665  192 GTVRADAVVLAagAW--SARLLPMLGLRLP---LRPVRGYVLV-TEPLPDLPLRPVLD-DTGVYLRPTADGRLLVggTAE 264

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501177480 316 PAtnvghymageipsqadarladiiGQELRPHEgkgkALADAIMEGAARYIPALKGATVKEVRLGYV 382
Cdd:COG0665  265 PA-----------------------GFDRAPTP----ERLEALLRRLRRLFPALADAEIVRAWAGLR 304
 
Name Accession Description Interval E-value
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 10-46 4.47e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 48.47  E-value: 4.47e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLG 46
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPY 37
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 11-87 5.61e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 45.08  E-value: 5.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501177480   11 DIVVIGAGFAGFYTAQELSHARYKVALLEiGDGLLGKTSSSYNecYK-LHTGVHYAGHPQTAIQCLkDSVKFAREFPE 87
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLE-RGDDPGSGASGRN--AGlIHPGLRYLEPSELARLAL-EALDLWEELEE 74
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
7-39 1.29e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 44.14  E-value: 1.29e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 501177480   7 ADTYDIVVIGAGFAGFYTAQELSHARYKVALLE 39
Cdd:COG1231    5 ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLE 37
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
9-382 3.84e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 42.58  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480   9 TYDIVVIGAGFAGFYTAQELSHARYKVALLEigDGLLGKTSSSYNecyklhTGV---HYAGHPQTAIQCL-KDSVKFARE 84
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLE--RGRPGSGASGRN------AGQlrpGLAALADRALVRLaREALDLWRE 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480  85 FPEyilGYEDDTLPWRHGRHYLmsnsLFDEETIKKtcslLQKTYAELvqqdpanKVFGEPAhfiRYLKASEYPYVAKTIA 164
Cdd:COG0665   74 LAA---ELGIDCDFRRTGVLYL----ARTEAELAA----LRAEAEAL-------RALGLPV---ELLDAAELREREPGLG 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 165 QPDmpnenadahVILGIETPES-QINIVK----LRRYAEREishfdQLTFATQHEVKNIQFAPDsldyQVEAydwLEGKT 239
Cdd:COG0665  133 SPD---------YAGGLYDPDDgHVDPAKlvraLARAARAA-----GVRIREGTPVTGLEREGG----RVTG---VRTER 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 240 NIIRTKGVVNC--AWqnIETLDRGLGYYVPdgrLVRLKVSLLVcLPEILRLINTCIFFaGPHCSVTNLGDGTAVI--TYE 315
Cdd:COG0665  192 GTVRADAVVLAagAW--SARLLPMLGLRLP---LRPVRGYVLV-TEPLPDLPLRPVLD-DTGVYLRPTADGRLLVggTAE 264

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501177480 316 PAtnvghymageipsqadarladiiGQELRPHEgkgkALADAIMEGAARYIPALKGATVKEVRLGYV 382
Cdd:COG0665  265 PA-----------------------GFDRAPTP----ERLEALLRRLRRLFPALADAEIVRAWAGLR 304
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 8-48 1.34e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.93  E-value: 1.34e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 501177480   8 DTYDIVVIGAGFAGFYTAQELSHARYKVALLEigDGLLGKT 48
Cdd:PRK06292   2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--KGPLGGT 40
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 10-42 6.89e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 38.45  E-value: 6.89e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGD 42
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33
 
Name Accession Description Interval E-value
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 10-46 4.47e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 48.47  E-value: 4.47e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLG 46
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPY 37
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 11-87 5.61e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 45.08  E-value: 5.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501177480   11 DIVVIGAGFAGFYTAQELSHARYKVALLEiGDGLLGKTSSSYNecYK-LHTGVHYAGHPQTAIQCLkDSVKFAREFPE 87
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLE-RGDDPGSGASGRN--AGlIHPGLRYLEPSELARLAL-EALDLWEELEE 74
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
14-64 5.86e-05

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 40.98  E-value: 5.86e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 501177480   14 VIGAGFAGFYTAQELSHARYKVALLEIGDGLLGKTSSSYNECYKLHTGVHY 64
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHI 51
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
7-39 1.29e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 44.14  E-value: 1.29e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 501177480   7 ADTYDIVVIGAGFAGFYTAQELSHARYKVALLE 39
Cdd:COG1231    5 ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLE 37
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 9-39 1.36e-04

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 44.05  E-value: 1.36e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 501177480   9 TYDIVVIGAGFAGFYTAQELSHARYKVALLE 39
Cdd:COG1053    3 EYDVVVVGSGGAGLRAALEAAEAGLKVLVLE 33
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 6-44 3.77e-04

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 42.54  E-value: 3.77e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 501177480   6 SADTYDIVVIGAGFAGFYTAQELSHARYKVALLEIGDGL 44
Cdd:COG2072    3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDV 41
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
9-382 3.84e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 42.58  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480   9 TYDIVVIGAGFAGFYTAQELSHARYKVALLEigDGLLGKTSSSYNecyklhTGV---HYAGHPQTAIQCL-KDSVKFARE 84
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLE--RGRPGSGASGRN------AGQlrpGLAALADRALVRLaREALDLWRE 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480  85 FPEyilGYEDDTLPWRHGRHYLmsnsLFDEETIKKtcslLQKTYAELvqqdpanKVFGEPAhfiRYLKASEYPYVAKTIA 164
Cdd:COG0665   74 LAA---ELGIDCDFRRTGVLYL----ARTEAELAA----LRAEAEAL-------RALGLPV---ELLDAAELREREPGLG 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 165 QPDmpnenadahVILGIETPES-QINIVK----LRRYAEREishfdQLTFATQHEVKNIQFAPDsldyQVEAydwLEGKT 239
Cdd:COG0665  133 SPD---------YAGGLYDPDDgHVDPAKlvraLARAARAA-----GVRIREGTPVTGLEREGG----RVTG---VRTER 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480 240 NIIRTKGVVNC--AWqnIETLDRGLGYYVPdgrLVRLKVSLLVcLPEILRLINTCIFFaGPHCSVTNLGDGTAVI--TYE 315
Cdd:COG0665  192 GTVRADAVVLAagAW--SARLLPMLGLRLP---LRPVRGYVLV-TEPLPDLPLRPVLD-DTGVYLRPTADGRLLVggTAE 264

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501177480 316 PAtnvghymageipsqadarladiiGQELRPHEgkgkALADAIMEGAARYIPALKGATVKEVRLGYV 382
Cdd:COG0665  265 PA-----------------------GFDRAPTP----ERLEALLRRLRRLFPALADAEIVRAWAGLR 304
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 8-48 1.34e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.93  E-value: 1.34e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 501177480   8 DTYDIVVIGAGFAGFYTAQELSHARYKVALLEigDGLLGKT 48
Cdd:PRK06292   2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--KGPLGGT 40
PRK06370 PRK06370
FAD-containing oxidoreductase;
7-48 1.39e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 40.96  E-value: 1.39e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 501177480   7 ADTYDIVVIGAGFAGFYTAQELSHARYKVALleIGDGLLGKT 48
Cdd:PRK06370   3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVAL--IERGLLGGT 42
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 9-39 1.91e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 40.31  E-value: 1.91e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 501177480   9 TYDIVVIGAGFAGFYTAQELSHARYKVALLE 39
Cdd:COG0654    3 RTDVLIVGGGPAGLALALALARAGIRVTVVE 33
HI0933_like pfam03486
HI0933-like protein;
10-47 2.30e-03

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 40.26  E-value: 2.30e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLGK 47
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRK 38
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 8-170 2.89e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 39.83  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480   8 DTYDIVVIGAGFAGFYTAQELSHARYKVALLE----IGdgllGKTSSSYNECYKLHTGVHYAGHPQTAIQCLK-----DS 78
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEkndtPG----GRARTFERPGFRFDVGPSVLTMPGVLERLFRelgleDY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501177480  79 VKFAREFPEYilgyeddTLPWRHGRHYLMSNSlfdeetikktcslLQKTYAELVQQDPankvfGEPAHFIRYLKASE--Y 156
Cdd:COG1233   78 LELVPLDPAY-------RVPFPDGRALDLPRD-------------LERTAAELERLFP-----GDAEAYRRFLAELRrlY 132

                        170
                 ....*....|....
gi 501177480 157 PYVAKTIAQPDMPN 170
Cdd:COG1233  133 DALLEDLLYRPLLS 146
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 11-50 3.98e-03

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 39.45  E-value: 3.98e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 501177480  11 DIVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLGKTSS 50
Cdd:COG3349    5 RVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARS 44
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 9-52 5.04e-03

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 39.32  E-value: 5.04e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 501177480   9 TYDIVVIGAGFAGFYTAQELShARYKVALleIGDGLLGKTSSSY 52
Cdd:COG0029    4 KTDVLVIGSGIAGLSAALKLA-ERGRVTL--LTKGELGESNTRW 44
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 6-41 5.36e-03

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 39.04  E-value: 5.36e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 501177480   6 SADTYDIVVIGAGFAGFYTAQELS-HARYKVALLEIG 41
Cdd:COG2303    1 MLEEYDYVIVGAGSAGCVLANRLSeDAGLRVLLLEAG 37
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
10-53 6.12e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 38.56  E-value: 6.12e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 501177480  10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGD--GLLGKTSSSYN 53
Cdd:COG0492    1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEGGEpgGQLATTKEIEN 46
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 11-67 6.52e-03

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 38.55  E-value: 6.52e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501177480   11 DIVVIGAGFAGFYTAQELSHARY--KVALLEIGDGLL----------GKTSSSYNECYKlH----TGVHYAGH 67
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLAAAKPglSVVLIEPGPSLLrpnnyvwsdeFEDLGALEDCVG-HswpgTRVHFDDG 72
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 10-42 6.89e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 38.45  E-value: 6.89e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 501177480   10 YDIVVIGAGFAGFYTAQELSHARYKVALLEIGD 42
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33
PLN02268 PLN02268
probable polyamine oxidase
 12-52 8.91e-03

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 38.52  E-value: 8.91e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 501177480  12 IVVIGAGFAGFYTAQELSHARYKVALLEIGDGLLGKTSSSY 52
Cdd:PLN02268   3 VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY 43
sdhA PRK06452
succinate dehydrogenase flavoprotein subunit; Reviewed
 10-38 9.33e-03

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 180567 [Multi-domain]  Cd Length: 566  Bit Score: 38.33  E-value: 9.33e-03
                         10        20
                 ....*....|....*....|....*....
gi 501177480  10 YDIVVIGAGFAGFYTAQELSHARYKVALL 38
Cdd:PRK06452   6 YDAVVIGGGLAGLMSAHEIASAGFKVAVI 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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