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Conserved domains on  [gi|501074325|ref|WP_012125239|]
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MULTISPECIES: putrescine ABC transporter permease PotI [Cronobacter]

Protein Classification

putrescine ABC transporter permease PotI( domain architecture ID 10793423)

putrescine ABC transporter permease PotI is required for the activity of the bacterial periplasmic transport system of putrescine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 1-281 3.36e-176

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


:

Pssm-ID: 182574  Cd Length: 281  Bit Score: 487.05  E-value: 3.36e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   1 MNNLPVVRSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAV 80
Cdd:PRK10592   1 MNNLPVVRSPWRIVILVLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  81 VLGTIAAVVMVRFGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVSVVIS 160
Cdd:PRK10592  81 ILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240
Cdd:PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 501074325 241 EINALASIILGVVGVIGLIAWFFMARAEKQRLRDVQRARRS 281
Cdd:PRK10592 241 EINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQRARRG 281
 
Name Accession Description Interval E-value
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 1-281 3.36e-176

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 487.05  E-value: 3.36e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   1 MNNLPVVRSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAV 80
Cdd:PRK10592   1 MNNLPVVRSPWRIVILVLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  81 VLGTIAAVVMVRFGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVSVVIS 160
Cdd:PRK10592  81 ILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240
Cdd:PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 501074325 241 EINALASIILGVVGVIGLIAWFFMARAEKQRLRDVQRARRS 281
Cdd:PRK10592 241 EINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQRARRG 281
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 8-271 4.43e-89

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 265.44  E-value: 4.43e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   8 RSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVT-VWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIA 86
Cdd:COG1177    5 GRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  87 AVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAigwpsdRGMLTIWLAHVTFCTAYVSVVISSRLREL 166
Cdd:COG1177   85 ALALARY-RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLS------GGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 167 DRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALA 246
Cdd:COG1177  158 DPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALS 237

                        250       260
                 ....*....|....*....|....*
gi 501074325 247 SIILGVVGVIGLIAWFFMARAEKQR 271
Cdd:COG1177  238 TLLILLSLLLLLLAERLRRRGERRR 262
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-256 4.22e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 4.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  68 SLTIAACAATMAVVLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDrGMLTIWLAH 147
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL-GLPALILAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 148 VtFCTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLP 227
Cdd:cd06261   82 L-LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 501074325 228 MLVFSSVRMGVNPEINALASIILGVVGVI 256
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 4-266 4.48e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 70.46  E-value: 4.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325    4 LPVVRSPWRILILILGFtFLYAPMLMLVVYSFNSsklvtvwaGWSTRWygELFHDSAMINAVGLSLTIAACAATMAVVLG 83
Cdd:TIGR00969  12 IKWGKLSLGIALLYVFL-ILILPVAALFVQAFSK--------GLGQFW--QNATDPIAVSAYNLTLLMALIAVPLNGVFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   84 TIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIW-LAHVTFCTAYVSVVISSR 162
Cdd:TIGR00969  81 LLIAWVLTRY-QFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFtWPGMALAMIFVSLPFVVR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  163 -----LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSG--PGAT-TLPMLVFSSV 234
Cdd:TIGR00969 160 evqpvLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGniPGKTlTLPLLIEERL 239

                         250       260       270
                  ....*....|....*....|....*....|..
gi 501074325  235 RMGVNPEINALASIILGVVGVIGLIAWFFMAR 266
Cdd:TIGR00969 240 EQYDYPGAYVIAAVLLLVSLVTLFLINALQAR 271
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 139-269 1.23e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  139 GMLTIWLAHVTFCTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFV 218
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 501074325  219 SGPGAttLPMLVFSSVRMGVNPEINALASIILGVVGVIGLIAWFFMARAEK 269
Cdd:pfam00528 131 GSWPG--LGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
 
Name Accession Description Interval E-value
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 1-281 3.36e-176

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 487.05  E-value: 3.36e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   1 MNNLPVVRSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAV 80
Cdd:PRK10592   1 MNNLPVVRSPWRIVILVLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  81 VLGTIAAVVMVRFGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVSVVIS 160
Cdd:PRK10592  81 ILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240
Cdd:PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 501074325 241 EINALASIILGVVGVIGLIAWFFMARAEKQRLRDVQRARRS 281
Cdd:PRK10592 241 EINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQRARRG 281
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 8-271 4.43e-89

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 265.44  E-value: 4.43e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   8 RSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVT-VWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIA 86
Cdd:COG1177    5 GRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  87 AVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAigwpsdRGMLTIWLAHVTFCTAYVSVVISSRLREL 166
Cdd:COG1177   85 ALALARY-RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLS------GGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 167 DRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALA 246
Cdd:COG1177  158 DPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALS 237

                        250       260
                 ....*....|....*....|....*
gi 501074325 247 SIILGVVGVIGLIAWFFMARAEKQR 271
Cdd:COG1177  238 TLLILLSLLLLLLAERLRRRGERRR 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 12-264 9.97e-71

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 218.70  E-value: 9.97e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  12 RILILILGFTFLYAPMLMLVVYSFNSSKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAVVMV 91
Cdd:PRK09500   6 RGGFMTLVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  92 RFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWpsdrgmLTIWLAHVTFCTAYVSVVISSRLRELDRSIE 171
Cdd:PRK09500  86 RY-RFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGF------WSLLFAHITFCLPFVVVTVYSRLKGFDVRML 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 172 EAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALASIILG 251
Cdd:PRK09500 159 EAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLV 238

                        250
                 ....*....|...
gi 501074325 252 VVGVIGLIAWFFM 264
Cdd:PRK09500 239 LSLVLVILSQLLA 251
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
4-266 7.60e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 120.27  E-value: 7.60e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   4 LPVVRSPWRILILILGFTFLYAPMLMLVVYSFNSsklvTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLG 83
Cdd:COG1178  283 LGRWRWLALALCLLLVLLGLLLPLLALLLWSLTK----ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLA 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  84 TIAAVVMVRfGRFRGSNGFAFMLTAPLVMPDVITGLSLlllFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVSVVISSRL 163
Cdd:COG1178  359 LLLAYLVRR-RRGRLARLLDRLAMLPYAVPGIVLGLGL---LLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAAL 434

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 164 RELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEIN 243
Cdd:COG1178  435 AQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAA 514

                        250       260
                 ....*....|....*....|...
gi 501074325 244 ALASIILGVVGVIGLIAWFFMAR 266
Cdd:COG1178  515 ALALLLVLVSLLPVLLLERLLGR 537
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-280 9.99e-30

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 117.18  E-value: 9.99e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   1 MNNLPVVRSPWRILILILGFT-FLYAPMLMLVVYSFnssklvtvwaGWSTRWYGELFHDSAMINAVGLSLTIAACAATMA 79
Cdd:COG1178    1 MSTRPRRRPRLLLLLLALLLAlLVLLPLLALLLRAF----------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  80 VVLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLF-------VALGHAIGW--PSDRGMLTIWLAHVTF 150
Cdd:COG1178   71 LLLGVPLAWLLART-DFPGRRLLRWLLLLPLALPPYVVALAWIALFgpngllnTLLRALFGLepPDIYGLGGIILVLVLF 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 151 CTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVsGPGATTLPMLV 230
Cdd:COG1178  150 NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-GGGYTTLTTAI 228

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 501074325 231 FSSVRMGVN-PEINALASIILGVVGVIGLIAWFFMARAEKQRLRDVQRARR 280
Cdd:COG1178  229 YQAWLGDFDlGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPR 279
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 8-269 8.83e-23

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 94.43  E-value: 8.83e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   8 RSPWRILILILGFTFLY------APMLMLVVYSFNssklvtvwAGWSTRWygELFHDSAMINAVGLSLTIAACAATMAVV 81
Cdd:COG0555    3 RRVLPGFGLTLGLTLLYlslivlLPLAALVLKAAG--------LGWAEFW--AVLTSPRVLAALKLSLGTALIAALINLV 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  82 LGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRG------MLTIWLAHVTFCTAYV 155
Cdd:COG0555   73 FGLPLAWVLVRY-RFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGikvaftPLGIVLAQTFVSLPFV 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 156 SVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSG--PGAT-TLPMLVFS 232
Cdd:COG0555  152 VRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGnlPMKTeILPLLIYL 231

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 501074325 233 SVRMGVNPEINALASIILGVVGVIGLIAWFFMARAEK 269
Cdd:COG0555  232 KLEEGDYAGATAIALVLLLISFLLLLLINLLQRRSRR 268
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 8-271 8.34e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 89.44  E-value: 8.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   8 RSPWRILILILGFT--FLYAPMLMLVVYSFNS-SKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGT 84
Cdd:COG1176    9 LRPLLLLLPALLWLllFFVLPLLLLLVYSFTTrDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGY 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  85 IAAVVMVRfGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLF------VALGHAIGWPSD-----RGMLTIWLAHVTFCTA 153
Cdd:COG1176   89 PIAYFLAR-APPRWRNLLLLLVILPFWTSFLVRTYAWIVLLgrngllNSLLLALGLIDEplrllYTEFAVVIGLVYVYLP 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 154 YVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSS 233
Cdd:COG1176  168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQ 247

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 501074325 234 VRMGVN-PEINALASIILGVVGVIGLIAWFFMARAEKQR 271
Cdd:COG1176  248 FLSALNwPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-268 2.65e-19

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 85.57  E-value: 2.65e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  16 LILGFTFLYAPMLMLVVYSFNSSKLVT---VWAGWstRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVR 92
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLSFTDWNLLGpppEFVGL--DNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  93 fgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLF-----------VALG-HAIGWPSDRG--MLTIWLAHVTFCTAYVSVV 158
Cdd:COG1175  106 --KLRGRGFFRTLFFLPWVISPVVVALIWKWLFnpdygllnallGALGlEPINWLGDPSlaLPAVIIVTVWKGTGFNMLI 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 159 ISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLD--DLVIASFVSGPG--ATTLPMLV---- 230
Cdd:COG1175  184 FLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQvfDLVYVLTGGGPGnsTTTLVLYIyqta 263

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 501074325 231 FSSVRMGVNpeiNALASIILGVVGVIGLIAWFFMARAE 268
Cdd:COG1175  264 FQQFDFGYA---SAIAVVLFLIILVLTLLQLRLLRRRE 298
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 58-262 8.18e-17

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 77.01  E-value: 8.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  58 DSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVRfGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFvalghaigwpSD 137
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLAR-TRFRGKGLLEALVTLPLVLPPTVLGFYLLLLF----------GR 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 138 RGMLTIWLAHVT------------FCTAYVS---VVISSR--LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSG 200
Cdd:COG4149   71 NGPLGQLLEELFgislvftwtgavLASVVVSlplMVQPLRaaFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAG 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501074325 201 WLLAFTLSLDD----LVIASFVsgPGAT-TLPMLVFSSVRMGVNPEINALASIILGV-VGVIGLIAWF 262
Cdd:COG4149  151 AVLAFARALGEfgatLMFAGNI--PGKTqTLPLAIYDAVEAGDYAAAHALSLILLAIsFVVLLLLNLL 216
modB PRK09421
molybdate ABC transporter permease subunit;
62-272 1.44e-15

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 73.80  E-value: 1.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  62 INAVGLSLTIAACAATMAVVLGTIAAVVMVRfGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGML 141
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLAR-CRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 142 TI---WLAHVTFC--TAYVSVVISSRL--RELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDL-V 213
Cdd:PRK09421  87 SFafsWRGAALAAavMAFPLMVRAIRLslEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFgA 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501074325 214 IASFVSG-PGAT-TLPMLVFSSVRMGVNPEINALASIILGVVGVIGLIAWFFMARAEKQRL 272
Cdd:PRK09421 167 TITFVSNiPGETqTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRL 227
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-256 4.22e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 4.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  68 SLTIAACAATMAVVLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDrGMLTIWLAH 147
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL-GLPALILAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 148 VtFCTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLP 227
Cdd:cd06261   82 L-LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 501074325 228 MLVFSSVRMGVNPEINALASIILGVVGVI 256
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 7-263 1.30e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 72.05  E-value: 1.30e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   7 VRSPWRILILILGFTFLYAPMLMLVVYSFNSSKLVTVW------AGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAV 80
Cdd:COG0395   12 LGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGppsllpSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  81 VLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGhaigWPSDRgmLTIWLAHVTFCTAYVSVVIS 160
Cdd:COG0395   92 LLSSLAAYALARF-RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLG----LLNTY--WGLILPYLAFGLPFGIFLLR 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIAS-FVSGPGATTLPMLVFSSVRMGVN 239
Cdd:COG0395  165 QFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPVGLASFQGQYGT 244

                        250       260
                 ....*....|....*....|....
gi 501074325 240 PEINALASIILGVVGVIgLIAWFF 263
Cdd:COG0395  245 DWGLLMAAAVIATLPVL-ILFLFL 267
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 4-266 4.48e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 70.46  E-value: 4.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325    4 LPVVRSPWRILILILGFtFLYAPMLMLVVYSFNSsklvtvwaGWSTRWygELFHDSAMINAVGLSLTIAACAATMAVVLG 83
Cdd:TIGR00969  12 IKWGKLSLGIALLYVFL-ILILPVAALFVQAFSK--------GLGQFW--QNATDPIAVSAYNLTLLMALIAVPLNGVFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   84 TIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIW-LAHVTFCTAYVSVVISSR 162
Cdd:TIGR00969  81 LLIAWVLTRY-QFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFtWPGMALAMIFVSLPFVVR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  163 -----LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSG--PGAT-TLPMLVFSSV 234
Cdd:TIGR00969 160 evqpvLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGniPGKTlTLPLLIEERL 239

                         250       260       270
                  ....*....|....*....|....*....|..
gi 501074325  235 RMGVNPEINALASIILGVVGVIGLIAWFFMAR 266
Cdd:TIGR00969 240 EQYDYPGAYVIAAVLLLVSLVTLFLINALQAR 271
cysT CHL00187
sulfate transport protein; Provisional
 9-209 4.65e-12

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 64.27  E-value: 4.65e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   9 SPWRILILILGFTFLYaPMLMLVVYSFNSSklvtvwagWSTRWygELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAV 88
Cdd:CHL00187  12 SIYIISLSYIIFLLVL-PILALLIKASQQP--------WSDFL--QKATEPIALSAYSLTLSMALIAALINGFFGLLIAW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  89 VMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGM------LTIWLAHVTFCTAYVSVVISSR 162
Cdd:CHL00187  81 VLVRY-NFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIqivftkLGVLLAMIFVSFPFVVRTIQPV 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 501074325 163 LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSL 209
Cdd:CHL00187 160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAI 206
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 8-233 7.47e-12

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 64.25  E-value: 7.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   8 RSPWRIL---ILILGFTFLYaPMLMLVVYSFNSSklvtvwAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGT 84
Cdd:PRK15050  22 LRPLLWLllpLLVLAPLVVY-PLVRVVLQSLTGE------HGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  85 IAAVVMVrFGRFRGSNGFAFMLTAPLVMPDVI----------TGLSLLLLFVALGHAIGWPSD--RGMLTIWLAHVTFCT 152
Cdd:PRK15050  95 LLALVLA-FVPFPGASLVGRFIDTFVAFPSFLitlaftflygSAGSVNIALQRLFGLEAPPLDflYSPGGVILAEITFYT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 153 AYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFS 232
Cdd:PRK15050 174 PFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYS 253


                 .
gi 501074325 233 S 233
Cdd:PRK15050 254 K 254
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 13-272 2.38e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 57.77  E-value: 2.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   13 ILILILGFTFLYAPMLMLVVYSFNSSKlvTVWAGWSTrwYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVR 92
Cdd:TIGR03262   8 AGMILALLLFLLLPLLALLTKSVYDSD--GDFIGLAN--FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   93 fGRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGW---PSDRGMLTIWLAHVTFCTAYVSVVISSRLRELDRS 169
Cdd:TIGR03262  84 -SRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLlggFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  170 IEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGpGATTLPMLVFSSVRMGVNPEINALASII 249
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGQQNFPMGAVVGVL 241

                         250       260
                  ....*....|....*....|...
gi 501074325  250 LGVVGVIGLIAWFFMARAEKQRL 272
Cdd:TIGR03262 242 LLLPALLAFGIDRAIQRRQRAQL 264
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 11-232 3.09e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 56.31  E-value: 3.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  11 WRILILILGFTFLYAPMLMLVVYSFNSSKLVT----VWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIA 86
Cdd:COG3833   17 LRHLVLIILAIIALFPILWVVSASFNPGGSLYssslIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALA 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  87 AVVMVRFgRFRGSNGF-----------AFM-LTAPLVMPDVI--TGLSLLLLFVALGHAIGwpsdrgmLTIWLAHVTFCT 152
Cdd:COG3833   97 AYAFSRF-RFKGRKAGllallllqmfpAFLaLVALYLLLSALglLNTLLGLILVYLGGAIP-------FNTWLMKGYFDT 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 153 ayvsvvissrlreLDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIAS-FVSGPGATTLPMLVF 231
Cdd:COG3833  169 -------------IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASvLLRSPENYTLAVGLY 235


                 .
gi 501074325 232 S 232
Cdd:COG3833  236 S 236
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 10-209 3.11e-09

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 57.19  E-value: 3.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  10 PWRILILILGFTFLYAPMLM---LVVYSFNSSklvtvW-------AGWSTR-WYGELfhdSAMINAVGLSLTIAACAATM 78
Cdd:COG4135  300 ALRRLGLALMLLIALLSLLGlalLLLWSFAGR-----WrfpdalpSSWTLRfWQRAA---PGLLEPLGNTLLLALASALI 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  79 AVVLGTIAAVVMVRFGRfRGSNGFAFMLTAPLVMPDV--ITGLSLLLLFVALGHAIGWpsdrgmlTIWlAHVTFCTAYVS 156
Cdd:COG4135  372 ALVLVLACLEAEARRGR-RPGRRALWLLYLPLLVPQIafLFGLQVLLLRLGLDGTWLA-------VIW-AHLVFVLPYVF 442

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 501074325 157 VVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSL 209
Cdd:COG4135  443 LSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSV 495
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
16-250 9.48e-09

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 55.15  E-value: 9.48e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  16 LILGFTFLYAPMLMLVVYSfnssKLVTVWAGWSTRWYGELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVRFgR 95
Cdd:PRK10971  15 LSLGTSLLFVCLILLLPLS----ALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRY-R 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  96 FRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTI--WLAhVTFCTAYVSVVISSR-----LRELDR 168
Cdd:PRK10971  90 FPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTytWLG-IAVAMAFTSIPFVVRtvqpvLEELGP 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 169 SIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGA---TTLPMLVFSSVRMGVNPEINAL 245
Cdd:PRK10971 169 EYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAwktEVTSLMIFVRLQEFDYPAASAI 248


                 ....*
gi 501074325 246 ASIIL 250
Cdd:PRK10971 249 ASVIL 253
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 13-256 1.84e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 48.76  E-value: 1.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   13 ILILILGFTFLYAPMLMLVVYSFNSSKLVTVWagwstrwygelfHDSAMINAVGLSLTIAACAATMAVVLgTIAAVVMVR 92
Cdd:TIGR01253 285 ILLILLALFFLFPPLLAIIIDALNSRNLLEVL------------ANPQLWQALGTSLRIALAAALLALTL-AIALLLLSR 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325   93 FGRFRGSNGFA-FMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLtiwlahVTFCTA-----YVSVVISSRLREL 166
Cdd:TIGR01253 352 ELEALHKMKAGqFIEMAGMLILAIPGIVLAMGFFLLLNDRDFLNIDADGI------VIFCNAlmaipFALKILEAPFHDI 425

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  167 DRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALA 246
Cdd:TIGR01253 426 MARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYQQIGNYRNQDAAVTA 505

                         250
                  ....*....|
gi 501074325  247 SIILGVVGVI 256
Cdd:TIGR01253 506 GILLLLCFIL 515
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 159-221 5.16e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 47.01  E-value: 5.16e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501074325 159 ISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGP 221
Cdd:PRK10683 203 IYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGP 265
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 139-269 1.23e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  139 GMLTIWLAHVTFCTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFV 218
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 501074325  219 SGPGAttLPMLVFSSVRMGVNPEINALASIILGVVGVIGLIAWFFMARAEK 269
Cdd:pfam00528 131 GSWPG--LGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 11-237 3.41e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 44.83  E-value: 3.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  11 WRILILILGFTFLYAPMLMLVVYSFNSSkLVTVWAgwstrwygelfhDSAMINAVGLSLTIAACAATMAVVLgTIAAVVM 90
Cdd:PRK09433 280 WDGLLIVLALLLLLPPLLAVVVSGLNAS-LLRVLA------------QPALWQALWTSLRIALAAALLAVVL-TMMLLWS 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  91 VRFGRFRGSNGFAFML----TAPLVMPDVI--TGLsllllFVALGHAIGWPSdrgmLTIWLahVTFCTA-----YVSVVI 159
Cdd:PRK09433 346 SRELRLRQRKLAAQALelsgMLILAMPGIVlaTGL-----FLLLRNTTDLPA----SALGI--VILTNAlmalpYALRVL 414

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501074325 160 SSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSsvRMG 237
Cdd:PRK09433 415 EPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQDFRTLPFLLYQ--QLG 490
malG PRK10998
maltose ABC transporter permease MalG;
68-216 9.13e-05

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 43.16  E-value: 9.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  68 SLTIAACAATMAVVLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAH 147
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARM-RFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVIFAY 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501074325 148 VTFCTAYVSVvISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIAS 216
Cdd:PRK10998 167 LGGIALHVWT-IKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVAS 234
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
58-230 2.98e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 41.66  E-value: 2.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  58 DSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVRFgRFRGSNGFAFMLTAPLVMPDVITGLSLLLLFVALGHAIGWPSD 137
Cdd:PRK11602  59 DPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRF-NFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDE 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 138 RGMLTIW----LAHVT-FCTA------YVSVVISSRLREldrsiEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFT 206
Cdd:PRK11602 138 HNLQLMFswpgMVLVTiFVTCpfvvreLVPVMLSQGSQE-----DEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNA 212

                        170       180
                 ....*....|....*....|....*..
gi 501074325 207 LSLDDLVIASFVSGP--GAT-TLPMLV 230
Cdd:PRK11602 213 RAIGEFGAVSVVSGSirGETlSLPLQI 239
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 161-220 5.35e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 40.83  E-value: 5.35e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLSLDDLVIASFVSG 220
Cdd:PRK09497 171 SSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGG 230
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 53-273 3.38e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 38.21  E-value: 3.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325  53 GELFHDSAMINAVGLSLTIAACAATMAVVLGTIAAVVMVRFGRFRGSNG--FAFMLTAPLV--MPDVItglsllllfVAL 128
Cdd:COG0600   51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDplLVFLRPIPPLalAPLLI---------LWF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501074325 129 GhaIGWPSdrgmlTIWLAhVTFCTAYVSVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAVVSGWLLAFTLS 208
Cdd:COG0600  122 G--IGEAS-----KIFVI-FLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLA 193

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 501074325 209 LDDLVIASFVSGPGAttLPMLVFSSVRMGVNPEInaLASIIlgVVGVIGLIAWFFMARAEKQRLR 273
Cdd:COG0600  194 WIGLVVAELLGASSG--LGYLILDARQLLDTDLV--FAAIL--VIGLLGLLLDLLLRLLERRLLR 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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