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Conserved domains on  [gi|501073799|ref|WP_012124737|]
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MULTISPECIES: tellurium resistance protein TerW [Cronobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YobV super family cl28501
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 5-84 3.89e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


The actual alignment was detected with superfamily member COG2378:

Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 42.37  E-value: 3.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501073799   5 TRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELREsYSAEIkYSKAGHS--YHLVNPGQLDKKTLRRmNEA 82
Cdd:COG2378    2 SRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRE-LGVPI-EAERGRGggYRLRDGYRLPPLMLTE-EEA 78


                 ..
gi 501073799  83 LA 84
Cdd:COG2378   79 LA 80
 
Name Accession Description Interval E-value
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 5-84 3.89e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 42.37  E-value: 3.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501073799   5 TRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELREsYSAEIkYSKAGHS--YHLVNPGQLDKKTLRRmNEA 82
Cdd:COG2378    2 SRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRE-LGVPI-EAERGRGggYRLRDGYRLPPLMLTE-EEA 78


                 ..
gi 501073799  83 LA 84
Cdd:COG2378   79 LA 80
 
Name Accession Description Interval E-value
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 5-84 3.89e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 42.37  E-value: 3.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501073799   5 TRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELREsYSAEIkYSKAGHS--YHLVNPGQLDKKTLRRmNEA 82
Cdd:COG2378    2 SRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRE-LGVPI-EAERGRGggYRLRDGYRLPPLMLTE-EEA 78


                 ..
gi 501073799  83 LA 84
Cdd:COG2378   79 LA 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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