|
Name |
Accession |
Description |
Interval |
E-value |
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
1-725 |
1.57e-152 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 462.72 E-value: 1.57e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 1 MIISLREINKYM-PEINLDSsIEKSINNLGYEVESIKQFS-DVKGIKFGYVLDVFKNENSKNLNIVSIKTNTGIITIQTT 78
Cdd:PRK00629 1 MKFSLSWLKEYVnPDISSEE-LAEALTMIGLEVEGVEDVAaGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 79 ATNVKKNHWIVAFVEGAS-KGEIVFGKKEMAGVVSNGMLASYSELGYDSsllpfDPNGVILLD-DSSINEDLdpIKYFNL 156
Cdd:PRK00629 80 APNVRAGDKVPVALPGAVlPGGFKIKKAKLRGVESEGMLCSASELGLSD-----DHDGIIELPeDAPVGTDA--REYLGL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 157 DDYIIDITTPANRAETNSYYVLAMELAAYYKTKFVWPNLLPKDNyRFRSNIKVSKNEATELTFFEAR-LKNNKTSLKDIL 235
Cdd:PRK00629 153 DDTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPA-TIDDKLPVEIEDPDLCPRYAGRvIKGVKNIAPSPL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 236 FLAKHGINAkGLYAI----DLTNIALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVSD-VLAIKDETGVI 308
Cdd:PRK00629 232 WLQERLRAA-GIRPInnvvDITNYVMLELGQPLHAFDLDKIGGGIVVRRaKEGEkLTTLDGKERTLDPeDLVIADDKKPL 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 309 SLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGISFL-KYKSALDC-QSVSQ 386
Cdd:PRK00629 311 ALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLALERAtALILELGGgEVVEG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 387 IVNIPKVKKGKSVIQSRKKLSIYANCNIKDlsifDDVEKTLKKIGFSMDKN-----RVIAPTYRSDIQHYEDVIEEYFRF 461
Cdd:PRK00629 391 VVDVYPLPKEPTITLRLERINRLLGTEISD----EEIVDILKRLGFEVTEVdgdglTVTVPSWRFDIEIEEDLVEEVARI 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 462 YGYSNFKPEAPKLELYKVAHSVDN------KNILQSLGYNEIRTFSLISSEmnILNPFNF-ESTVKLMTFVSKEREEVRN 534
Cdd:PRK00629 467 YGYDNIPSTPPVAALTMGGLTEAQrllrrlRRALAALGYQEVITYSFVSPE--DAKLFGLnPEPLLLLNPISEELSVMRT 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 535 SIIPSLLESAEFNLKRKINNVSLFEHGMI--------NDNKFVYGLLSNEK-----------SFDEIKQDIYNFL---KV 592
Cdd:PRK00629 545 SLLPGLLEAVAYNLNRGNKDVALFEIGRVflpdgdlpREPEHLAGVLTGNRveeswggkrpvDFFDLKGDVEALLealGL 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 593 DNLEFIPFKDNELIHPNVSAKIIYNGCFIGWIGKVHPSYnASNF------WVAEF----MNVNNNLKVEFNVYDPSPLKS 662
Cdd:PRK00629 625 PEVEFVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKV-LKKLdlpgrtYVFELdldaLLEAARKLPKYKPISKFPAVR 703
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500501597 663 IDLTFTINSNEAIASKISEINEISKS--FSIMQIDSFTN----GDKRNVTLRVT-----GSFEEiNKINEIFNK 725
Cdd:PRK00629 704 RDLALVVDEDVPAADILKAIKKAGGKllESVELFDVYEGkgigEGKKSLAFRLTfqdpdRTLTD-EEINAAMDK 776
|
|
| pheT_bact |
TIGR00472 |
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ... |
1-725 |
1.45e-118 |
|
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273097 [Multi-domain] Cd Length: 797 Bit Score: 374.32 E-value: 1.45e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 1 MIISLREINKYMPEINLDSS-IEKSINNLGYEVESIKQFSDV-KGIKFGYVLDVFKNENSKNLNIVSIKTNTG-IITIQT 77
Cdd:TIGR00472 1 MKISLKWLREYVPLSEIDNEeIAEALTSIGLEVEAVIPFSKPlKGVVVGKVLEVEPHPNADKLKVCKVDIGEKeMLQIVC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 78 TATNVKKNHWIVAFVEGASKGE-IVFGKKEMAGVVSNGMLASYSELGYDSSLlpfdpNGVILLDDssiNEDL--DPIKYF 154
Cdd:TIGR00472 81 GAPNVEAGKKVAVALPGAKLPNgLKIKKSKLRGVESEGMLCSESELGLDEKS-----DGIIVLDE---DAPLgtDIAEYL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 155 NLDDYIIDITTPANRAETNSYYVLAMELAAYYKTKFVWPNL-LPKDNYRFRSNIKVSKNEATELTFFEAR----LKNNKT 229
Cdd:TIGR00472 153 GLDDDIIEVSITPNRGDCLSILGIARELAALFDLNLETPVPfEPETTETIDEGFKIEIEDPEVCPFYLGRvikgVKVKPS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 230 SLKDILFLAKHGINAKGLYaIDLTNIALLVAGVPCHVYDKNKI--GKSLSCSKFSGELEILGGKKVS-VSDVLAIKDETG 306
Cdd:TIGR00472 233 PLWLKERLRRSGIRPINNI-VDITNYVMLELGQPLHAFDADKIegNIVVRSAKEGESFTTLDGKERElKKGDLVIADDKK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 307 VISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGISFLKYKSAL--DCQSV 384
Cdd:TIGR00472 312 PLAIAGVMGGKESGVTDTTTNIFLESAYFNPESIRKTARRLGISTDSSYRFERGVDPELTELALDRALNLILEifGGEVI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 385 SQIV-NIPKVKKGKSVIQSRKKLSIYANCNIKDlsifDDVEKTLKKIGFSMDKNR----VIAPTYRSDIQHYEDVIEEYF 459
Cdd:TIGR00472 392 SVVSdNYKEKAKEKKISLRIKKLNKILGIELSD----EEVRDILKRLGFKVEKQKdgweVTVPSYRHDIEIEEDLIEEIA 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 460 RFYGYSNFKPEAPKLELYKVAHSVDNKNI------LQSLGYNEIRTFSLISSEMNILNPF-NFESTVKLMTFVSKEREEV 532
Cdd:TIGR00472 468 RIYGYDNIPAEPLSVSSKLNKNNENYLLLrklrtlLVGLGLNEVITYSFVDPEKAEKFNFpKLENLVEIKNPLSNERSVL 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 533 RNSIIPSLLESAEFNLKRKINNVSLFEHGMINDNKFVY--------GLLSNEK------------SFDEIKQDI----YN 588
Cdd:TIGR00472 548 RTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGEAvkeqlrlaILISGEKnpsswnhkeekvDFYDLKGDVesllEL 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 589 FLKVDNLEFIPFKDNELIHPNVSAKIIYNGCFIGWIGKVHPSYNASNF-----WVAEFM--NVNNNLKVEFNVYDPS--P 659
Cdd:TIGR00472 628 LGLSDDVYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPEIAKKYDlkeptFVFELDldRLLESLKKVPKYRPISkfP 707
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500501597 660 LKSIDLTFTINSNEAIASKISEINEISKS--FSIMQIDSFTNG----DKRNVTLRVT-----GSFEEiNKINEIFNK 725
Cdd:TIGR00472 708 AVTRDISFLVPKDVPANEIIKLIKKSGLEllEEVELFDVYQGKnigeGKKSLALRLVlrdkeRTLTD-EEINKIVEK 783
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
28-630 |
2.59e-70 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 245.07 E-value: 2.59e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 28 LGYEVESIKQFSDVKGIKFGYVLDVFKNENSKNLNIVSIKTNTGIITIQT-TATNVKKNHWIVAFVEGASKGEIVF-GKK 105
Cdd:COG0072 29 GLEEEEVEGAAAVVVGVVVVVVVVEEPHPDADDLVVVVVDVGGGEVLVVVcGAANVAVGVVVVAAPGGAVLPGGFKiKKA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 106 EMAGVVSNGMLASYSELGydsslLPFDPNGVI-LLDDSSINEDLdpIKYFNLDDYIIDITTPANRAETNSYYVLAMELAA 184
Cdd:COG0072 109 KIRGVESSGMLCSEEELG-----LGEDHDGIIvLPPDAPVGGDA--REYLGLDDTVLEIDLTPNRADCLSVRGVARELAA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 185 YYKTKFVWPNLLPKDNYRFRSNIKVsKNEATEL-TFFEARL-KN--NKTS---LKDILFLAkhG---INAkglyAIDLTN 254
Cdd:COG0072 182 LLGAPLKLPAIEPEVPPAIDDPIPV-EIEDPEAcPRYAGRViRGvkVGPSplwMQERLRAA--GirpINN----VVDITN 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 255 IALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVS-DVLAIKDETGVISLASVMGCENSAVDENTKEVVFE 331
Cdd:COG0072 255 YVMLELGQPLHAFDLDKLKGGIVVRRaREGEkLTTLDGKERTLDpDDLVIADDEGPLALAGVMGGEDSEVTEETTDVLLE 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 332 VGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGisfLKYKSAL-----DCQSVSQIVNI-PKVKKGKSVIQSRKK 405
Cdd:COG0072 335 SAYFDPVSIRRTARRLGLHSDASYRFERGVDPALTVAA---LERATQLileiaGGEVGPGIVDVyPEPPEPKTITLRLAR 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 406 LSIYANCNIKDlsifDDVEKTLKKIGFSMDKN----RVIAPTYRSDIQHYEDVIEEYFRFYGYSNFKPEAPKLELYKVAH 481
Cdd:COG0072 412 INRLLGVEIPA----EEIEEILERLGFEVEEDgdglTVTVPSWRFDIEIEADLIEEVARIYGYDNIPSTLPRAPLAGGGL 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 482 SVDN------KNILQSLGYNEIRTFSLISSEMniLNPFNFE-STVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINN 554
Cdd:COG0072 488 TEAQrlrrrvRRALAARGYQEVITYSFVSPED--ADLFGLRrEAVRLANPISEDLSVMRTSLLPGLLEAAAYNLNRGQKD 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 555 VSLFEHGMI---NDNKF----------VYGLLSNE------KSFD--EIKQDIYNFL---KVDNLEFIPFKDNELiHPNV 610
Cdd:COG0072 566 VRLFEIGRVflpDEGEEpreplhlagvLTGNREPEswggkaRPVDffDLKGDVEALLaalGVPKLEFEAAEHPAL-HPGR 644
|
650 660
....*....|....*....|
gi 500501597 611 SAKIIYNGCFIGWIGKVHPS 630
Cdd:COG0072 645 SAEILLGGKVIGFIGELHPK 664
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
486-630 |
1.15e-25 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 105.03 E-value: 1.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 486 KNILQSLGYNEIRTFSLISSEMNILNPFNFESTVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINNVSLFEHGMIND 565
Cdd:cd00769 10 RRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFEIGRVFL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 566 NK------------FVYGLLSNEK--------SFDEIKQDIYNFLKV--DNLEFIPFK-DNELIHPNVSAKIIYNGCFIG 622
Cdd:cd00769 90 KDedgpeeeehlaaLLSGNREPESwqgkgrpvDFYDAKGILEALLRAlgIIVEFELEElDADLFHPGRSAKIYVNGEVIG 169
|
....*...
gi 500501597 623 WIGKVHPS 630
Cdd:cd00769 170 FIGELHPE 177
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
225-370 |
5.79e-25 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 102.24 E-value: 5.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 225 KNNKTS---LKDILFLAKH-GINAkglyAIDLTNIALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVS-D 297
Cdd:pfam03483 14 KKNRPSpewLQRRLRRAGIrPINN----VVDITNYVMLELGQPLHAFDLDKIAGDIVVRLaKGGEkFTTLDGKERELDpG 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500501597 298 VLAIKDETGVISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGI 370
Cdd:pfam03483 90 DLVIADDDGPVALAGIMGGEESEVTEDTTNIFLESAGFDPVAIRKTARRLGLRTDASYRFERGVDPELVEAAL 162
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
219-373 |
5.79e-17 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 79.23 E-value: 5.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 219 FFEARLKNNKTSLKDILFLAKHGINAKGLY---AIDLTNIALLVAGVPCHVYDKNKIGKS---LSCSKFSGELEILGGKK 292
Cdd:smart00873 4 YLGRVIRGVKNTRPSPEWLQERLHRAGIRPinnVVDITNYVSLETGQPLHAFDLDKIKGKdipLRRAKEGEKFETLDGKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 293 VSVS-DVLAIKDETGVISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGIS 371
Cdd:smart00873 84 YELDeGDLVIADDEGPLALAGVMGGEESEVTENTTVIFLEPAIFSPRTIRITARTLNLFTDASGRFERGVDPELVELALD 163
|
..
gi 500501597 372 FL 373
Cdd:smart00873 164 RA 165
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
1-725 |
1.57e-152 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 462.72 E-value: 1.57e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 1 MIISLREINKYM-PEINLDSsIEKSINNLGYEVESIKQFS-DVKGIKFGYVLDVFKNENSKNLNIVSIKTNTGIITIQTT 78
Cdd:PRK00629 1 MKFSLSWLKEYVnPDISSEE-LAEALTMIGLEVEGVEDVAaGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 79 ATNVKKNHWIVAFVEGAS-KGEIVFGKKEMAGVVSNGMLASYSELGYDSsllpfDPNGVILLD-DSSINEDLdpIKYFNL 156
Cdd:PRK00629 80 APNVRAGDKVPVALPGAVlPGGFKIKKAKLRGVESEGMLCSASELGLSD-----DHDGIIELPeDAPVGTDA--REYLGL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 157 DDYIIDITTPANRAETNSYYVLAMELAAYYKTKFVWPNLLPKDNyRFRSNIKVSKNEATELTFFEAR-LKNNKTSLKDIL 235
Cdd:PRK00629 153 DDTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPA-TIDDKLPVEIEDPDLCPRYAGRvIKGVKNIAPSPL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 236 FLAKHGINAkGLYAI----DLTNIALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVSD-VLAIKDETGVI 308
Cdd:PRK00629 232 WLQERLRAA-GIRPInnvvDITNYVMLELGQPLHAFDLDKIGGGIVVRRaKEGEkLTTLDGKERTLDPeDLVIADDKKPL 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 309 SLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGISFL-KYKSALDC-QSVSQ 386
Cdd:PRK00629 311 ALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLALERAtALILELGGgEVVEG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 387 IVNIPKVKKGKSVIQSRKKLSIYANCNIKDlsifDDVEKTLKKIGFSMDKN-----RVIAPTYRSDIQHYEDVIEEYFRF 461
Cdd:PRK00629 391 VVDVYPLPKEPTITLRLERINRLLGTEISD----EEIVDILKRLGFEVTEVdgdglTVTVPSWRFDIEIEEDLVEEVARI 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 462 YGYSNFKPEAPKLELYKVAHSVDN------KNILQSLGYNEIRTFSLISSEmnILNPFNF-ESTVKLMTFVSKEREEVRN 534
Cdd:PRK00629 467 YGYDNIPSTPPVAALTMGGLTEAQrllrrlRRALAALGYQEVITYSFVSPE--DAKLFGLnPEPLLLLNPISEELSVMRT 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 535 SIIPSLLESAEFNLKRKINNVSLFEHGMI--------NDNKFVYGLLSNEK-----------SFDEIKQDIYNFL---KV 592
Cdd:PRK00629 545 SLLPGLLEAVAYNLNRGNKDVALFEIGRVflpdgdlpREPEHLAGVLTGNRveeswggkrpvDFFDLKGDVEALLealGL 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 593 DNLEFIPFKDNELIHPNVSAKIIYNGCFIGWIGKVHPSYnASNF------WVAEF----MNVNNNLKVEFNVYDPSPLKS 662
Cdd:PRK00629 625 PEVEFVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKV-LKKLdlpgrtYVFELdldaLLEAARKLPKYKPISKFPAVR 703
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500501597 663 IDLTFTINSNEAIASKISEINEISKS--FSIMQIDSFTN----GDKRNVTLRVT-----GSFEEiNKINEIFNK 725
Cdd:PRK00629 704 RDLALVVDEDVPAADILKAIKKAGGKllESVELFDVYEGkgigEGKKSLAFRLTfqdpdRTLTD-EEINAAMDK 776
|
|
| pheT_bact |
TIGR00472 |
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ... |
1-725 |
1.45e-118 |
|
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273097 [Multi-domain] Cd Length: 797 Bit Score: 374.32 E-value: 1.45e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 1 MIISLREINKYMPEINLDSS-IEKSINNLGYEVESIKQFSDV-KGIKFGYVLDVFKNENSKNLNIVSIKTNTG-IITIQT 77
Cdd:TIGR00472 1 MKISLKWLREYVPLSEIDNEeIAEALTSIGLEVEAVIPFSKPlKGVVVGKVLEVEPHPNADKLKVCKVDIGEKeMLQIVC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 78 TATNVKKNHWIVAFVEGASKGE-IVFGKKEMAGVVSNGMLASYSELGYDSSLlpfdpNGVILLDDssiNEDL--DPIKYF 154
Cdd:TIGR00472 81 GAPNVEAGKKVAVALPGAKLPNgLKIKKSKLRGVESEGMLCSESELGLDEKS-----DGIIVLDE---DAPLgtDIAEYL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 155 NLDDYIIDITTPANRAETNSYYVLAMELAAYYKTKFVWPNL-LPKDNYRFRSNIKVSKNEATELTFFEAR----LKNNKT 229
Cdd:TIGR00472 153 GLDDDIIEVSITPNRGDCLSILGIARELAALFDLNLETPVPfEPETTETIDEGFKIEIEDPEVCPFYLGRvikgVKVKPS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 230 SLKDILFLAKHGINAKGLYaIDLTNIALLVAGVPCHVYDKNKI--GKSLSCSKFSGELEILGGKKVS-VSDVLAIKDETG 306
Cdd:TIGR00472 233 PLWLKERLRRSGIRPINNI-VDITNYVMLELGQPLHAFDADKIegNIVVRSAKEGESFTTLDGKERElKKGDLVIADDKK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 307 VISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGISFLKYKSAL--DCQSV 384
Cdd:TIGR00472 312 PLAIAGVMGGKESGVTDTTTNIFLESAYFNPESIRKTARRLGISTDSSYRFERGVDPELTELALDRALNLILEifGGEVI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 385 SQIV-NIPKVKKGKSVIQSRKKLSIYANCNIKDlsifDDVEKTLKKIGFSMDKNR----VIAPTYRSDIQHYEDVIEEYF 459
Cdd:TIGR00472 392 SVVSdNYKEKAKEKKISLRIKKLNKILGIELSD----EEVRDILKRLGFKVEKQKdgweVTVPSYRHDIEIEEDLIEEIA 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 460 RFYGYSNFKPEAPKLELYKVAHSVDNKNI------LQSLGYNEIRTFSLISSEMNILNPF-NFESTVKLMTFVSKEREEV 532
Cdd:TIGR00472 468 RIYGYDNIPAEPLSVSSKLNKNNENYLLLrklrtlLVGLGLNEVITYSFVDPEKAEKFNFpKLENLVEIKNPLSNERSVL 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 533 RNSIIPSLLESAEFNLKRKINNVSLFEHGMINDNKFVY--------GLLSNEK------------SFDEIKQDI----YN 588
Cdd:TIGR00472 548 RTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGEAvkeqlrlaILISGEKnpsswnhkeekvDFYDLKGDVesllEL 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 589 FLKVDNLEFIPFKDNELIHPNVSAKIIYNGCFIGWIGKVHPSYNASNF-----WVAEFM--NVNNNLKVEFNVYDPS--P 659
Cdd:TIGR00472 628 LGLSDDVYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPEIAKKYDlkeptFVFELDldRLLESLKKVPKYRPISkfP 707
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500501597 660 LKSIDLTFTINSNEAIASKISEINEISKS--FSIMQIDSFTNG----DKRNVTLRVT-----GSFEEiNKINEIFNK 725
Cdd:TIGR00472 708 AVTRDISFLVPKDVPANEIIKLIKKSGLEllEEVELFDVYQGKnigeGKKSLALRLVlrdkeRTLTD-EEINKIVEK 783
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
28-630 |
2.59e-70 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 245.07 E-value: 2.59e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 28 LGYEVESIKQFSDVKGIKFGYVLDVFKNENSKNLNIVSIKTNTGIITIQT-TATNVKKNHWIVAFVEGASKGEIVF-GKK 105
Cdd:COG0072 29 GLEEEEVEGAAAVVVGVVVVVVVVEEPHPDADDLVVVVVDVGGGEVLVVVcGAANVAVGVVVVAAPGGAVLPGGFKiKKA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 106 EMAGVVSNGMLASYSELGydsslLPFDPNGVI-LLDDSSINEDLdpIKYFNLDDYIIDITTPANRAETNSYYVLAMELAA 184
Cdd:COG0072 109 KIRGVESSGMLCSEEELG-----LGEDHDGIIvLPPDAPVGGDA--REYLGLDDTVLEIDLTPNRADCLSVRGVARELAA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 185 YYKTKFVWPNLLPKDNYRFRSNIKVsKNEATEL-TFFEARL-KN--NKTS---LKDILFLAkhG---INAkglyAIDLTN 254
Cdd:COG0072 182 LLGAPLKLPAIEPEVPPAIDDPIPV-EIEDPEAcPRYAGRViRGvkVGPSplwMQERLRAA--GirpINN----VVDITN 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 255 IALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVS-DVLAIKDETGVISLASVMGCENSAVDENTKEVVFE 331
Cdd:COG0072 255 YVMLELGQPLHAFDLDKLKGGIVVRRaREGEkLTTLDGKERTLDpDDLVIADDEGPLALAGVMGGEDSEVTEETTDVLLE 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 332 VGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGisfLKYKSAL-----DCQSVSQIVNI-PKVKKGKSVIQSRKK 405
Cdd:COG0072 335 SAYFDPVSIRRTARRLGLHSDASYRFERGVDPALTVAA---LERATQLileiaGGEVGPGIVDVyPEPPEPKTITLRLAR 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 406 LSIYANCNIKDlsifDDVEKTLKKIGFSMDKN----RVIAPTYRSDIQHYEDVIEEYFRFYGYSNFKPEAPKLELYKVAH 481
Cdd:COG0072 412 INRLLGVEIPA----EEIEEILERLGFEVEEDgdglTVTVPSWRFDIEIEADLIEEVARIYGYDNIPSTLPRAPLAGGGL 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 482 SVDN------KNILQSLGYNEIRTFSLISSEMniLNPFNFE-STVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINN 554
Cdd:COG0072 488 TEAQrlrrrvRRALAARGYQEVITYSFVSPED--ADLFGLRrEAVRLANPISEDLSVMRTSLLPGLLEAAAYNLNRGQKD 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 555 VSLFEHGMI---NDNKF----------VYGLLSNE------KSFD--EIKQDIYNFL---KVDNLEFIPFKDNELiHPNV 610
Cdd:COG0072 566 VRLFEIGRVflpDEGEEpreplhlagvLTGNREPEswggkaRPVDffDLKGDVEALLaalGVPKLEFEAAEHPAL-HPGR 644
|
650 660
....*....|....*....|
gi 500501597 611 SAKIIYNGCFIGWIGKVHPS 630
Cdd:COG0072 645 SAEILLGGKVIGFIGELHPK 664
|
|
| EMAP |
COG0073 |
tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis]; |
1-561 |
7.52e-32 |
|
tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 439843 [Multi-domain] Cd Length: 773 Bit Score: 132.67 E-value: 7.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 1 MIISLREINKYmpeINLDSS---IEKSINNLGYEVESIKQFSDVKGIKFGYVLDVFKNENSKNLNIVSIKTNTGIITIQT 77
Cdd:COG0073 1 MKVSLSWLKEY---VDLDLSpeeLAEKLTMAGIEVEDFEKVGGLDGLRVGKVLEAEPHPNADKLLVLQVDVGEETRQIVC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 78 TATNVKKNHW-IVAFVeGAS-KGEIVFGKKEMAGVVSNGMLASYSELGYDSsllpfDPNGVILLDDSSINEDlDPIKYFN 155
Cdd:COG0073 78 GAPNVYAGDKvPEALV-GAQvPGVVNLKPRKIRGVESEGMLCSAEELGLGE-----DHDGILELPEDAPPGD-DAEYLLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 156 LDDYIIDITTPANRAETNSYYVLAMELAAYYKTKFVWPNLLPKDNYRFRSNIKVSKNEATELTFFEARLKNN----KTSL 231
Cdd:COG0073 151 LDDVIIEILTTPNRDDLLSVGGAAREAAALGGLLLKPPAPPVVEGTDDAVLVVVVDDDACDRYYGRVVRGVVnvvvPPPP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 232 KDILFLAKHGINAKGLYAIDLTNIALLVAGVPCHVYDKNKIGKSLSCSKFSGELEILGGK-KVSVSDVLAIKDETGVISL 310
Cdd:COG0073 231 WLRRLLRRGGRRRIINVVDINNVVLLLLGQPHHAFDDDDLGGGIVVRRRRAEELLLLLLGdTTLLLDDLLLIDDDDDALA 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 311 ASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGISFLKYKSALDCQ------SV 384
Cdd:COG0073 311 AAGGGGGGGGSSGSTTTTTLLLAAAAFFAAAGRRRRRRRLSSRSSRRRRREDDDDPRVAAAAAAAALLLIILgggggvAG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 385 SQIVNIPKVKKGKSVIQSRKKLSIYANCNIKDLSIFDDVEKTLKKIGFSMDKNRVIAPTYRSDIQHYEDVIEEYFRFYGY 464
Cdd:COG0073 391 GVVDEGLPPPPPRIIRLRRRRRLLLLGIDIDEEELLLLLLLLGFEVEGEGESVVVPPPRRRDDVIEEDEEEEEARRYYYY 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 465 ----SNFKPEAPKLELYKVAHSVDNKNILQSLGYNEIRTFSLISSEMNILNPFNFESTVKLMTFVSKEREEVRNSIIPSL 540
Cdd:COG0073 471 dlppPPPPAPPAVPEPPAARRRLRRRRRLLLLLGLEEAVTYSSFSELLLALLLLFEAALLLLLPPSSLSSSLLLSLLLLL 550
|
570 580
....*....|....*....|.
gi 500501597 541 LESAEFNLKRKINNVSLFEHG 561
Cdd:COG0073 551 LLLVLLLLRRRNRNRRLFEGG 571
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
146-707 |
3.21e-29 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 124.05 E-value: 3.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 146 EDLDPIKYFNLDDYIIDITTPANRAETNSYYVLAMELAAYY-KTKFVWPNLLPK----DNYRFRSNIKVSKNEAteLTFF 220
Cdd:CHL00192 34 EDILSVKIGGESDIILDISSTANRSDVLSIQGLSREISALFnSDPIKLKYYNPSiswfDKLKNLISNDSSKLNC--SMFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 221 EARLKN--NKTSLKDIL-FLAKHGINAKGLYaIDLTNIALLVAGVPCHVYDKNKIGKSLSCSKFSGELEILGGKKVSV-- 295
Cdd:CHL00192 112 AVIIENieIKDSPKWLQnRLSSSGFKSLNNL-TDIQNYIMLETGQPIEIYDLDKIYSKNTTSSLALSSKFALQKSSFIas 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 296 --------SDVLAIKDETGVISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVF 367
Cdd:CHL00192 191 nsknieleNNILVVQANNVIISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLL 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 368 NgiSFLKYKSALDCQSVSQIVNIPKVKKGKSVIQSRKKLS----------IYANCNIKDLSiFDDVEKTLKKIGF----- 432
Cdd:CHL00192 271 E--AYYRLVSLLRILNPKLKCKFHFIYKKIKNSSRRIKLSykkikdilgpIKINTNTRYLS-PKEITNALKRLNFkityd 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 433 -SMDKNRVIAPTYRS-DIQHYEDVIEEYFRFYGYSNFKPEAPKLELYKVAHSVDNK-----NILQSLGYNEIRTFSLISS 505
Cdd:CHL00192 348 sLKLNWEVLIPSYRKdDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTrdkirSYLRNLGLTELIHYSLVKQ 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 506 EmnilnpFNFESTVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINNVSLFEHG---------MINDNKFVYGLLSNE 576
Cdd:CHL00192 428 E------SFSKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGhvfnldsssIIEETELAGGIFGGI 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 577 K------------SFDEIKQDIYNFLKVDNLEFI-----PFKDNELIHPNVSAKI-IYNGCFIGWIGKVHPS-YNASNF- 636
Cdd:CHL00192 502 DirsswsekaqslNWFEAKGIIENFFQKLNLPIYwkkysDLDEKINFHPYCTSEIfLSNGQKIGIFGQLHPLlANKLNLn 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 637 ---WVAEFMNV-------NNNLKVeFNVYDPSPLKSIDLTFTINSNeaiaSKISEINEIsksfsimqIDSFTNGDKRNVT 706
Cdd:CHL00192 582 teiYLFEINLDilqysiqQNNLIS-YQPYSSYPKIIRDLSFIIKKS----ISISKIKEL--------IYQNGDNLLESIT 648
|
.
gi 500501597 707 L 707
Cdd:CHL00192 649 L 649
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
486-630 |
1.15e-25 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 105.03 E-value: 1.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 486 KNILQSLGYNEIRTFSLISSEMNILNPFNFESTVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINNVSLFEHGMIND 565
Cdd:cd00769 10 RRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFEIGRVFL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 566 NK------------FVYGLLSNEK--------SFDEIKQDIYNFLKV--DNLEFIPFK-DNELIHPNVSAKIIYNGCFIG 622
Cdd:cd00769 90 KDedgpeeeehlaaLLSGNREPESwqgkgrpvDFYDAKGILEALLRAlgIIVEFELEElDADLFHPGRSAKIYVNGEVIG 169
|
....*...
gi 500501597 623 WIGKVHPS 630
Cdd:cd00769 170 FIGELHPE 177
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
225-370 |
5.79e-25 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 102.24 E-value: 5.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 225 KNNKTS---LKDILFLAKH-GINAkglyAIDLTNIALLVAGVPCHVYDKNKIGKSLSCSK-FSGE-LEILGGKKVSVS-D 297
Cdd:pfam03483 14 KKNRPSpewLQRRLRRAGIrPINN----VVDITNYVMLELGQPLHAFDLDKIAGDIVVRLaKGGEkFTTLDGKERELDpG 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500501597 298 VLAIKDETGVISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGI 370
Cdd:pfam03483 90 DLVIADDDGPVALAGIMGGEESEVTEDTTNIFLESAGFDPVAIRKTARRLGLRTDASYRFERGVDPELVEAAL 162
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
486-641 |
1.60e-23 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 99.16 E-value: 1.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 486 KNILQSLGYNEIRTFSLISSEMN--ILNPFNFESTVKLMTFVSKEREEVRNSIIPSLLESAEFNLKRKINNVSLFEHGM- 562
Cdd:pfam17759 26 RDLLAAAGFTEVITYSFTSPKDLdkLLEDDPRRKAVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRv 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 563 -INDNK--------FVYGLLSNEKS------------FDEIKQDIYNFLK---VDNLEFIPfKDNELIHPNVSAKIIYNG 618
Cdd:pfam17759 106 fLPDELeelpreprRLAGLLTGKRLpeswqgkarpvdFYDLKGIVEALLAalgIDDYEFEA-ADHPALHPGRSAEILVGG 184
|
170 180
....*....|....*....|....*....
gi 500501597 619 CFIGWIGKVHPSYnASNF------WVAEF 641
Cdd:pfam17759 185 KVIGFIGELHPEV-AKNFdlpqpvYVFEL 212
|
|
| tRNA_bind_bactPheRS |
cd02796 |
tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. ... |
44-142 |
2.23e-19 |
|
tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Pssm-ID: 239196 [Multi-domain] Cd Length: 103 Bit Score: 83.71 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 44 IKFGYVLDVFKNENSKNLNIVSIKTNTG-IITIQTTATNVKKNHWIVAFVEGAS-KGEIVFGKKEMAGVVSNGMLASYSE 121
Cdd:cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENkPLQIVCGAPNVRAGDKVVVALPGAVlPGGLKIKKRKLRGVESEGMLCSAKE 80
|
90 100
....*....|....*....|.
gi 500501597 122 LGYDSsllpfDPNGVILLDDS 142
Cdd:cd02796 81 LGLGE-----DSDGIIELPED 96
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
219-373 |
5.79e-17 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 79.23 E-value: 5.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 219 FFEARLKNNKTSLKDILFLAKHGINAKGLY---AIDLTNIALLVAGVPCHVYDKNKIGKS---LSCSKFSGELEILGGKK 292
Cdd:smart00873 4 YLGRVIRGVKNTRPSPEWLQERLHRAGIRPinnVVDITNYVSLETGQPLHAFDLDKIKGKdipLRRAKEGEKFETLDGKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 293 VSVS-DVLAIKDETGVISLASVMGCENSAVDENTKEVVFEVGLFDPLLVRHGAREIKMDTASSIQAGRALNSQIVFNGIS 371
Cdd:smart00873 84 YELDeGDLVIADDEGPLALAGVMGGEESEVTENTTVIFLEPAIFSPRTIRITARTLNLFTDASGRFERGVDPELVELALD 163
|
..
gi 500501597 372 FL 373
Cdd:smart00873 164 RA 165
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
397-464 |
2.90e-12 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 62.13 E-value: 2.90e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500501597 397 KSVIQSRKKLSIYANCNIKDlsifDDVEKTLKKIGFSMDKN----RVIAPTYRSDIQHYEDVIEEYFRFYGY 464
Cdd:smart00874 1 RTITLRLERINRLLGLEILA----EEIEEILKRLGFEVEVSgdtlEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
421-464 |
7.39e-11 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 58.17 E-value: 7.39e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 500501597 421 DDVEKTLKKIGFSM-----DKNRVIAPTYRSDIQHYEDVIEEYFRFYGY 464
Cdd:pfam03484 19 EEIVEILERLGFEVeeedgDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
438-629 |
2.56e-08 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 57.38 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 438 RVIAPTYRSDIQHYEDVIEEYFRFYGYSNFKPEAPKlelykvAHSVDNKNILQSL-----------GYNEIRTFSLISSE 506
Cdd:PLN02265 354 RVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPK------SMTVGKQQPLNQFsdllraevamaGFTEVLTWILCSHK 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 507 MNILN---PFNFESTVKLMTFVSKEREEVRNSIIPSLLESAEFNlKRKINNVSLFEHG---MINDNKFV--------YGL 572
Cdd:PLN02265 428 ENFAMlnrEDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHN-KDAPKPIKLFEVSdvvLLDESKDVgarnsrrlAAL 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500501597 573 LSNEKS-FDEIKQDIYNFLKVDNLEFIPFKDNELIH----------PNVSAKIIYNGCFIGWIGKVHP 629
Cdd:PLN02265 507 YCGTTSgFEVIHGLVDRIMEVLGIPFVEIGDNNGYYvepsnepeyfPGRQASIIYKGKHVGTFGIVHP 574
|
|
| tRNA_bind |
pfam01588 |
Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, ... |
44-129 |
3.25e-05 |
|
Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation.
Pssm-ID: 396251 [Multi-domain] Cd Length: 96 Bit Score: 43.00 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500501597 44 IKFGYVLDVFKNENSKNLNIVSIKTNTGII-TIQTTATNVKKNHWIVAfvegaskGEIV----FGKKEMAGVVSNGMLAS 118
Cdd:pfam01588 1 LRVGKVVEAERHPNADKLLVCKVDVGEEEPrQIVSGAVNVYPPEELVG-------RLVVvvanLKPAKLRGVESEGMILS 73
|
90
....*....|.
gi 500501597 119 YSELGYDSSLL 129
Cdd:pfam01588 74 AEELDGGSVGL 84
|
|
| |
