NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|500144917|ref|WP_011820920|]
View 

ATP synthase F1 subunit epsilon [Prochlorococcus marinus]

Protein Classification

F0F1 ATP synthase subunit epsilon( domain architecture ID 11414036)

F0F1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-134 4.62e-53

ATP synthase CF1 epsilon subunit


:

Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 163.50  E-value: 4.62e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNS 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVND 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500144917  81 AEIGSEINTQNAEEALKKAKSAISKfpeNEKSPEKIKALNEISKAEARFQASKN 134
Cdd:CHL00063  81 AEKGSDIDPQEAQQTLEIAEANLEK---AEGKKQKIEANLALKRARARVEAINA 131
 
Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-134 4.62e-53

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 163.50  E-value: 4.62e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNS 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVND 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500144917  81 AEIGSEINTQNAEEALKKAKSAISKfpeNEKSPEKIKALNEISKAEARFQASKN 134
Cdd:CHL00063  81 AEKGSDIDPQEAQQTLEIAEANLEK---AEGKKQKIEANLALKRARARVEAINA 131
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-131 7.37e-37

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 122.36  E-value: 7.37e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917    3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLR-MNSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRkLGDDWEHIAVSGGFAEVQPDKVTILADGA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 500144917   82 EIGSEINTQNAEEALKKAKSAISkfpENEKSPEKIKALNEISKAEARFQA 131
Cdd:TIGR01216  82 VFADDIDEAEAEKALEAAEKLLE---SAEDDKDLAEALLKLKKARAQLEA 128
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 3-133 1.21e-35

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 119.14  E-value: 1.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTeDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 500144917  82 EIGSEINTQNAEEALKKAKSAISKFPENEkspEKIKALNEISKAEARFQASK 133
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDI---DYARAEAALARALARLRAAE 129
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 3-127 2.99e-34

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 115.30  E-value: 2.99e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDeDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 500144917  82 EIGSEINTQNAEEALKKAKSAISKFPENEkspEKIKALNEISKAEA 127
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDER---EKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 3-81 1.58e-28

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 99.43  E-value: 1.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917    3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTeDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-134 4.62e-53

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 163.50  E-value: 4.62e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNS 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVND 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500144917  81 AEIGSEINTQNAEEALKKAKSAISKfpeNEKSPEKIKALNEISKAEARFQASKN 134
Cdd:CHL00063  81 AEKGSDIDPQEAQQTLEIAEANLEK---AEGKKQKIEANLALKRARARVEAINA 131
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-133 3.12e-45

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 143.75  E-value: 3.12e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLR-MNSKWTSIALMGGFAEIESDEVIVLVN 79
Cdd:PRK00571   2 ATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLAD 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500144917  80 SAEIGSEINTQNAEEALKKAKSAISkfpENEKSPEKIKALNEISKAEARFQASK 133
Cdd:PRK00571  82 SAERADDIDEARAEEAKERAEEALE---NKHDDVDYARAQAALARAIARLRVAE 132
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-131 7.37e-37

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 122.36  E-value: 7.37e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917    3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLR-MNSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRkLGDDWEHIAVSGGFAEVQPDKVTILADGA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 500144917   82 EIGSEINTQNAEEALKKAKSAISkfpENEKSPEKIKALNEISKAEARFQA 131
Cdd:TIGR01216  82 VFADDIDEAEAEKALEAAEKLLE---SAEDDKDLAEALLKLKKARAQLEA 128
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 3-133 1.21e-35

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 119.14  E-value: 1.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTeDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 500144917  82 EIGSEINTQNAEEALKKAKSAISKFPENEkspEKIKALNEISKAEARFQASK 133
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDI---DYARAEAALARALARLRAAE 129
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 3-127 2.99e-34

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 115.30  E-value: 2.99e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDeDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 500144917  82 EIGSEINTQNAEEALKKAKSAISKFPENEkspEKIKALNEISKAEA 127
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDER---EKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 3-81 1.58e-28

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 99.43  E-value: 1.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917    3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTeDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-132 1.35e-23

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 88.86  E-value: 1.35e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKV--LAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLV 78
Cdd:PRK13446   1 MAKKLKLeiVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500144917  79 NSAEIGSEINTQNAEEALKKAKSAISKFPENEKSPEKIKALNeisKAEARFQAS 132
Cdd:PRK13446  81 ETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALE---RALIRLQVA 131
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 3-101 4.16e-17

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 71.83  E-value: 4.16e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNSAE 82
Cdd:PRK13444   6 LTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHGA 85

                         90
                 ....*....|....*....
gi 500144917  83 IGSEINTQNAEEALKKAKS 101
Cdd:PRK13444  86 LKEDIDHEHEKKLLAEAEK 104
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 3-105 4.87e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 66.71  E-value: 4.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRL-RMNSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:PRK13450   4 IKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIiDENGEKKKIFTSSGVLKVENNEVYILCDAS 83

                         90       100
                 ....*....|....*....|....
gi 500144917  82 EIGSEINTQNAEEALKKAKSAISK 105
Cdd:PRK13450  84 EWPEEIDIKRAENAKKRAEERLRK 107
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 1-133 3.53e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 64.63  E-value: 3.53e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNS 80
Cdd:PRK14735   1 MPIHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADT 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 500144917  81 AEIGSEINTQNAEEALKKAKSAISkfpENEKSPEKIKALNEISKAEARFQASK 133
Cdd:PRK14735  81 AERADEIDEARAEQARAEAEQRRR---ERQSEQDLALAEAKLRRAMVRLRVAQ 130
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-84 3.28e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 60.80  E-value: 3.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRM-NSKWTSIALMGGFAEIESDEVIVLVN 79
Cdd:PRK13442   4 ATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTpGGERISAAVDGGFISFDSNKLTVLAE 83


                 ....*
gi 500144917  80 SAEIG 84
Cdd:PRK13442  84 RAELV 88
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 3-131 1.99e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 55.14  E-value: 1.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNSAE 82
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDME 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 500144917  83 IGSEINTQNAEEALKKAKSAIsKFPENEKSpeKIKALNE-ISKAEARFQA 131
Cdd:PRK13452  86 RAENLNQAEAEKARARAKEVL-KNPDASKL--DIEAANKrLKEADARLKA 132
atpC PRK13449
ATP synthase F1 subunit epsilon;
1-88 5.49e-09

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 49.77  E-value: 5.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMN--SKWTSIALMGGFAEIESDEVIVLv 78
Cdd:PRK13449   2 AKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSdgAAPEVFHVQGGFAEVNEKGLTIL- 80

                         90
                 ....*....|
gi 500144917  79 nsAEIGSEIN 88
Cdd:PRK13449  81 --AEHAVEAA 88
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 8-81 2.53e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 49.02  E-value: 2.53e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500144917   8 LAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRL-RMNSKWTSIALMGGFAEIESDEVIVLVNSA 81
Cdd:PRK14736   9 VGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVtETTGNGKRIYVRGGFAEIGPTSVTVLAERA 83
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 7-110 2.77e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 49.00  E-value: 2.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   7 VLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNSAEIGSE 86
Cdd:PRK13448   8 LVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLADVATSVAD 87

                         90       100
                 ....*....|....*....|....
gi 500144917  87 INTQNAEEALKKAKSAISKFPENE 110
Cdd:PRK13448  88 LDLAQFAATIAEMEAQLAGKVGDE 111
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-113 1.31e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 47.22  E-value: 1.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   1 MAISLK--VLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLV 78
Cdd:PRK13443   1 MAGTLQfdLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSISVLA 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 500144917  79 NSAEIGSEINTQNAEEALKKAKSAISK-FPENEKSP 113
Cdd:PRK13443  81 EKAIPVEELTGAVLDEFIAEARELASVaLPENEPGD 116
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 5-88 8.02e-04

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 36.30  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   5 LKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRLRMNSKWTSIALMGGFAEIESDEVIVLVNSAEIG 84
Cdd:PRK13451   3 VKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAGRE 82


                 ....
gi 500144917  85 SEIN 88
Cdd:PRK13451  83 EEIS 86
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 3-95 1.91e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 35.62  E-value: 1.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500144917   3 ISLKVLAPNQNVYEGDAEEVILPSTTGQIGVLPGHISLVTAIDIGVLRL---RMNSKWTSIALMGGFAEIESDEVIVLVN 79
Cdd:PRK01474   5 ILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVyidDMHKSENTYLISGGVTEVTGNYINIATE 84

                         90
                 ....*....|....*.
gi 500144917  80 SAeigseINTQNAEEA 95
Cdd:PRK01474  85 TA-----INVTNLSEA 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH