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Conserved domains on  [gi|500095799|ref|WP_011771806|]
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flagellar hook protein FlgE [Psychromonas ingrahamii]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11482423)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgE PRK06803
flagellar basal body protein FlaE;
1-398 0e+00

flagellar basal body protein FlaE;


:

Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 620.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSGITQNFDRNGSLEATGRALDLAISGN 80
Cdd:PRK06803   1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  81 GFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTANFDARA 160
Cdd:PRK06803  81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 161 TPVASAA--FDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPVIEFTTEGLLAD--T 236
Cdd:PRK06803 161 TPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFDDTGALIPgkG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 237 STIPILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFP 316
Cdd:PRK06803 241 STINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 317 NPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK06803 321 NPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400


                 ..
gi 500095799 397 AV 398
Cdd:PRK06803 401 AI 402
 
Name Accession Description Interval E-value
flgE PRK06803
flagellar basal body protein FlaE;
1-398 0e+00

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 620.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSGITQNFDRNGSLEATGRALDLAISGN 80
Cdd:PRK06803   1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  81 GFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTANFDARA 160
Cdd:PRK06803  81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 161 TPVASAA--FDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPVIEFTTEGLLAD--T 236
Cdd:PRK06803 161 TPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFDDTGALIPgkG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 237 STIPILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFP 316
Cdd:PRK06803 241 STINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 317 NPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK06803 321 NPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400


                 ..
gi 500095799 397 AV 398
Cdd:PRK06803 401 AI 402
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-398 9.52e-160

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 455.40  E-value: 9.52e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQ--------AGGVEVSGITQNFDRnGSLEATGRA 72
Cdd:COG1749    3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLsganptqvGGGVRVASVAQIFTQ-GSLQSTGNA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  73 LDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQK--GNIDDLAISTASLSAKATDSI 150
Cdd:COG1749   82 LDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDtgGGLEPIQIPTGQLPAKATTKV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 151 EFTANFDARATpVASAAFDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAP----VIE 226
Cdd:COG1749  162 TLGGNLPADAT-VPTAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVDGADVTGGTGAtgtgTLT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 227 FTTEG-LLADTSTIPILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQ 305
Cdd:COG1749  241 FDSNGkLTSPTSGGPGTLTLTVNGAAPQTITLDLSGLTQYASSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQTR 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 306 LQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTIS 385
Cdd:COG1749  321 PLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVIT 400

                        410
                 ....*....|...
gi 500095799 386 TADQLTKALFNAV 398
Cdd:COG1749  401 TSDEMLQTLVNLK 413
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-380 1.32e-53

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 177.44  E-value: 1.32e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799    1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY------NGGQAGGVEVSGITQNFDRnGSLEATGRALD 74
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLsqsvsgSGQVGGGVRTSGVATDFSQ-GSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   75 LAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLqgytvdakanlqkgniddlaistaslsakatdsiefta 154
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL-------------------------------------- 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  155 nfdaratpvasaafdpadptsftssytaqafdslgnahtvsqyfinTGSNQWNIkVIADDNdvtpdpapvieftteglla 234
Cdd:TIGR03506 122 ----------------------------------------------LDWGGGPI-TLPPDA------------------- 135

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  235 dtstipilvsipalganliaveidltgstqygadfgvstnnpngytagelTGIRVEDNGMIFAQFTNGQSQLQGQLVLAD 314
Cdd:TIGR03506 136 --------------------------------------------------GSVSIGEDGTVSATYSNGQTVELGQIALAN 165

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500095799  315 FPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQAN 380
Cdd:TIGR03506 166 FPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 319-396 1.05e-13

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 65.75  E-value: 1.05e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500095799  319 TALEQSNNTSWMQTfgSGTPVkgaPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:pfam06429   1 AGLEKGGDNLFRET--DGAPI---LGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
flgE PRK06803
flagellar basal body protein FlaE;
1-398 0e+00

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 620.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSGITQNFDRNGSLEATGRALDLAISGN 80
Cdd:PRK06803   1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  81 GFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTANFDARA 160
Cdd:PRK06803  81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 161 TPVASAA--FDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPVIEFTTEGLLAD--T 236
Cdd:PRK06803 161 TPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFDDTGALIPgkG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 237 STIPILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFP 316
Cdd:PRK06803 241 STINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 317 NPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK06803 321 NPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400


                 ..
gi 500095799 397 AV 398
Cdd:PRK06803 401 AI 402
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-398 9.52e-160

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 455.40  E-value: 9.52e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQ--------AGGVEVSGITQNFDRnGSLEATGRA 72
Cdd:COG1749    3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLsganptqvGGGVRVASVAQIFTQ-GSLQSTGNA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  73 LDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQK--GNIDDLAISTASLSAKATDSI 150
Cdd:COG1749   82 LDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDtgGGLEPIQIPTGQLPAKATTKV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 151 EFTANFDARATpVASAAFDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAP----VIE 226
Cdd:COG1749  162 TLGGNLPADAT-VPTAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVDGADVTGGTGAtgtgTLT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 227 FTTEG-LLADTSTIPILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQ 305
Cdd:COG1749  241 FDSNGkLTSPTSGGPGTLTLTVNGAAPQTITLDLSGLTQYASSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQTR 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 306 LQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTIS 385
Cdd:COG1749  321 PLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVIT 400

                        410
                 ....*....|...
gi 500095799 386 TADQLTKALFNAV 398
Cdd:COG1749  401 TSDEMLQTLVNLK 413
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-396 2.11e-132

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 385.73  E-value: 2.11e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY------NGGQAG-GVEVSGITQNFDrNGSLEATGRAL 73
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYansagtNPTQVGsGVKVAGVAQQFS-QGSITSTGNSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  74 DLAISGNGFFAtVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQK---GNIDDLAISTASLSAKATDSI 150
Cdd:PRK05682  80 DLAISGNGFFV-VSNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPPtvgAGLVPLNIPTTALAPKATTSG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 151 EFTANFDARATPVasaafdPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPV----IE 226
Cdd:PRK05682 159 TFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVKTGDNTWEVYVYDDGKPVSTTATGTgtttLT 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 227 FTTEG-LLADTSTIPILVSIPAL--GANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQ 303
Cdd:PRK05682 233 FDSNGaLTTTTSPTTFNITGGATngADGGQTITLDLSGSTQYASGFTVSATTQDGYAPGTLTGYSIDDDGTVTAVYSNGQ 312

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 304 SQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKT 383
Cdd:PRK05682 313 TKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQANAKT 392

                        410
                 ....*....|...
gi 500095799 384 ISTADQLTKALFN 396
Cdd:PRK05682 393 IKTQDQLLQTLVN 405
flgE PRK12637
flagellar hook protein FlgE; Provisional
 1-396 3.05e-55

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 189.19  E-value: 3.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAG-GVEVSGITQNFDRnGSLEATGRALDLAISG 79
Cdd:PRK12637   1 MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGlGVKVSAINQRFTV-GNISTTGGEYDMAIDG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  80 -NGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKA------NLQKGNIDDLAISTASL------SAKA 146
Cdd:PRK12637  80 gKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGaqpvdlQLPQGNIAPQATSTAGLqtnlnaNAKV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 147 TD----------------SIEFT-----------------------------ANFDARATP--------VASAAFDPADP 173
Cdd:PRK12637 160 IDpndtpavdgtveldgtTYRFTnaggtfawvapapldgtynggdiviaggaVTGDLASQPgyqpykplVAGIPFDPTNP 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 174 TSFTSSYTAQAFDSLGNAHTVSQYFINTGS----NQWNIKVIADDN--DVTPDPAPVIEFTTEG-LLADTSTIPILVSIP 246
Cdd:PRK12637 240 LSYTDQVPTTVYDSLGNSHQMIQYFAKRPAvgteSVYEVYYVLDGQpmQVNGGASQTLNFDTAGnLLNQPPTAQVTFANP 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 247 ---ALGANLIAVEIDLTGSTQYGADFGVSTNNpNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFPNPTALEQ 323
Cdd:PRK12637 320 ggnAAPADPLAITVSYNGVTQYGSDFAPKVVQ-NGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQP 398

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500095799 324 SNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK12637 399 VGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 471
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-380 1.32e-53

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 177.44  E-value: 1.32e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799    1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY------NGGQAGGVEVSGITQNFDRnGSLEATGRALD 74
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLsqsvsgSGQVGGGVRTSGVATDFSQ-GSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   75 LAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLqgytvdakanlqkgniddlaistaslsakatdsiefta 154
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL-------------------------------------- 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  155 nfdaratpvasaafdpadptsftssytaqafdslgnahtvsqyfinTGSNQWNIkVIADDNdvtpdpapvieftteglla 234
Cdd:TIGR03506 122 ----------------------------------------------LDWGGGPI-TLPPDA------------------- 135

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  235 dtstipilvsipalganliaveidltgstqygadfgvstnnpngytagelTGIRVEDNGMIFAQFTNGQSQLQGQLVLAD 314
Cdd:TIGR03506 136 --------------------------------------------------GSVSIGEDGTVSATYSNGQTVELGQIALAN 165

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500095799  315 FPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQAN 380
Cdd:TIGR03506 166 FPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
3-398 2.92e-49

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 167.30  E-value: 2.92e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   3 FNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFAS------------------IYNGGQAG-GVEVSGITQNFdRN 63
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDllyqlirrpgapssqgtqTPVGLQLGtGVRVAATQTDF-TQ 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  64 GSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGytvdakanlQKGNIddlaistasls 143
Cdd:COG4786   80 GSLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPVLP---------ENGPI----------- 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 144 akatdsieftanfdaratpvasaafdpadptsftssytaqafdslgnahtvsqyfintgsnqwnikviaddndvtpdpap 223
Cdd:COG4786      --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 224 vieftteglladtsTIPilvsipalganliaveidltgstqygadfgvstnnpngytaGELTGIRVEDNGMIFAQFTNGQ 303
Cdd:COG4786  140 --------------TIP-----------------------------------------EDATSITISEDGTVSVTLADGD 164

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 304 SQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKT 383
Cdd:COG4786  165 GQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYEANSKV 244

                        410
                 ....*....|....*
gi 500095799 384 ISTADQLTKALFNAV 398
Cdd:COG4786  245 IQTADEMLGKANNLR 259
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 2-396 3.42e-33

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 124.77  E-value: 3.42e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799    2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASI------YNGGQAG--------------GVEVSGiTQNFD 61
Cdd:TIGR02488   1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLlyqterQPGAQSSeqqtilpvgvqvglGVRVVA-TQKLF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   62 RNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQgytvdakanlqkgniddlaistas 141
Cdd:TIGR02488  80 TQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQ------------------------ 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  142 lsakatdsieftanfdaratpvasaafdpadptsftssytaqafdslgnahtvsqyfintgsnqwnikviaddndvtpdp 221
Cdd:TIGR02488     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  222 aPVIeftteglladtsTIPilvsipalgANLIAVEIDLTGStqygadfgVSTNNPNgytageltgirvedngmifaqftN 301
Cdd:TIGR02488 136 -PEI------------TIP---------ENATSITVGSDGE--------VSVRQGG-----------------------Q 162

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  302 GQSQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANT 381
Cdd:TIGR02488 163 TEPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNS 242

                         410
                  ....*....|....*
gi 500095799  382 KTISTADQLTKALFN 396
Cdd:TIGR02488 243 KAIQASDQMLQTVSQ 257
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 5-390 2.99e-32

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 122.28  E-value: 2.99e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   5 IAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASI------YNGGQAG-------------GVEVSGITQNFDrNGS 65
Cdd:PRK12693   7 IAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLlyqtirQPGAQSSqnttlpsglqvgtGVRPVATQKIFT-QGN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  66 LEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGytvdakanlqkgniddlaistaslsak 145
Cdd:PRK12693  86 LQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQP--------------------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 146 atdsiEFTAnfdaratpvasaafdPADPTSFTssytaqafdsLGNAHTVSqyfintgsnqwnikviaddndvtpdpapvi 225
Cdd:PRK12693 139 -----EITI---------------PENATSIT----------IGTDGTVS------------------------------ 158

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 226 eftteglladtstipilVSIPAlganliaveidltgstqygadfgvstnnpngytageltgirvedngmifaqftNGQSQ 305
Cdd:PRK12693 159 -----------------VTQAG-----------------------------------------------------QAAPQ 168

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 306 LQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTIS 385
Cdd:PRK12693 169 VVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKAIS 248


                 ....*
gi 500095799 386 TADQL 390
Cdd:PRK12693 249 TADQM 253
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 7-396 2.91e-29

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 114.47  E-value: 2.91e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   7 ISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY-----------------NGGQAGGVEVSGITQNFDRNGSLEAT 69
Cdd:PRK12636   9 ISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVsqtisgasgptanrggvNSKQVGLGSQLGAIDTIHTQGSLQTT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  70 GRALDLAISGNGFFAtVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGytvdakANLQKGNIDDlaistaslsakatds 149
Cdd:PRK12636  89 GRPLDLAISGDGFFR-VGDGDNTAYTRAGNFYLDNEGNIVNADGLYLLG------MNGGRIQIPT--------------- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 150 ieftanfdaratpvasaafdpadptsftssyTAQAFdSLGNAHTVSqyfintgsnqwnikvIADDNdvtpdpapvieftt 229
Cdd:PRK12636 147 -------------------------------DAQSF-SIGADGTVS---------------YVDAG-------------- 165

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 230 eglladtstipilvsipalganliaveidltgstqygadfgvstnnpngytageltgirvedngmifaqftnGQSQLQGQ 309
Cdd:PRK12636 166 ------------------------------------------------------------------------GELQTAGQ 173

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 310 LVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQ 389
Cdd:PRK12636 174 IGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDE 253


                 ....*..
gi 500095799 390 LTKALFN 396
Cdd:PRK12636 254 ILQELVN 260
flgE PRK08425
flagellar hook protein FlgE; Validated
 138-396 5.52e-29

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 119.03  E-value: 5.52e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 138 STASLSAKATDSIEFTANFDARATPVASAAFDPADPTSFT-SSYTAQA--FDSLGNAHTVS-----QYFINTGSNQWNIK 209
Cdd:PRK08425 447 GYSSKNDNVTNNVLFTNIMKGLNGASLIEGGASASSSKLThATHAASIdiYDSLGSKHTLRiefykSSTTQDGGAEWNMI 526

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 210 VI----ADDNDVTPDPAPVIE-----FTTEGLLAdTSTIPILVSIPALGA---NLIAVEIDLTGS----TQYGADFGVST 273
Cdd:PRK08425 527 IIvpepAEINGGSEGRPNNFEggrlrFNNDGSLA-GMNPPTLQFDPNNGAaapQRINLSFGTSGSfdglTSVDKISETYA 605

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 274 NNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTS 353
Cdd:PRK08425 606 IEQDGYTAGDLMDIRFDSDGTILGAFTNGRTFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISG 685

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 500095799 354 NMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK08425 686 SKLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQ 728
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 103-396 7.32e-27

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 112.73  E-value: 7.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  103 DKDNFIVSSAGNKLQGYTVDAKANLQKGNIDDLAISTASLS--------AKATDSIEFTANFDARATP---VASAAFDPA 171
Cdd:TIGR02489 397 DGSGYFASTDVNAAVKVTINANGMFEISNADDNDTEPKNLSlnvtsysnKNVTTNVLFKAIMKALNTGpltEGGSIKESE 476

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  172 DPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIaddndvTPDPAPVIE---------------FTTEGLLAdT 236
Cdd:TIGR02489 477 QLKLAAHSAGLDIVDSLGSKHTLEVQFVKQGGNEWSFIIR------VPEPAEFNGgsgegpnifeggrarFNNDGSLA-G 549

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  237 STIPILVSIPALGANlIAVEIDLTGSTQYGADFGVSTN--------NPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQG 308
Cdd:TIGR02489 550 MNPPTIQFSPKNGAA-PPQRIKLSFGTSGTFDGLTSSDkastttgiAQNGYQSGNLKDIRFDSNGNLLGEFSNGKTFALA 628

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  309 QLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTAD 388
Cdd:TIGR02489 629 QVAMASFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEMSTSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSD 708


                  ....*...
gi 500095799  389 QLTKALFN 396
Cdd:TIGR02489 709 QILNTLLQ 716
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 2-392 4.57e-25

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 103.00  E-value: 4.57e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY------------NGGQAG--------GVEVSGItQNFD 61
Cdd:PRK12692   3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLyqaerqqgvpnqAGQEAVpegamlglGVRAAAI-RNLH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  62 RNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSagnklQGYTVDakanlqkgniddlaistas 141
Cdd:PRK12692  82 RQGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTM-----EGYAVD------------------- 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 142 lsakatdsieftanfdaratpvaSAAFDPADPTSFTSSYTAQAFDSLgnahtvsqyfintgsnqwnikviadDNDVTPdp 221
Cdd:PRK12692 138 -----------------------PAILIPQNTTQVTINESGQVFAKI-------------------------DGQVAP-- 167

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 222 apvieftteglladtstipilvsipalganliaveidltgstqygadfgvstnnpngytageltgirvedngmifaqftn 301
Cdd:PRK12692     --------------------------------------------------------------------------------

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 302 gqsQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANT 381
Cdd:PRK12692 168 ---QNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAFEMNS 244

                        410
                 ....*....|.
gi 500095799 382 KTISTADQLTK 392
Cdd:PRK12692 245 KVIQAADEMAG 255
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 6-390 1.78e-20

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 90.25  E-value: 1.78e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   6 AISGLNATNKQLNTISNNIANVSTYGFKESRAEFAS-IYN-----------------GGQAG-GVEVSGiTQNFDRNGSL 66
Cdd:PRK12816   8 AASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDlIYQtqrragtpatedtvtplGVQVGhGVKVAA-TQRLFEQGSL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  67 EATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQgytvdakanlqkgniddlaistaslsaka 146
Cdd:PRK12816  87 QATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLL----------------------------- 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 147 tDSIEFTANFdaratpvasaafdpadptsftssytaqafdsLGNAHTVSQYFINTgsnqwnIKViADDNDvtpdpapvie 226
Cdd:PRK12816 138 -PEIIFPENY-------------------------------ILNSITISEEGIVS------VKV-GEDND---------- 168

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 227 ftteglladtstiPILVsipalganliaveidltgstqygadfgvstnnpngytageltgirvedngmifaqftngqsql 306
Cdd:PRK12816 169 -------------PIEL--------------------------------------------------------------- 172

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 307 qGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTIST 386
Cdd:PRK12816 173 -GQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQT 251


                 ....
gi 500095799 387 ADQL 390
Cdd:PRK12816 252 SDNM 255
flgE PRK05841
flagellar hook protein FlgE; Validated
 6-396 1.02e-17

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 84.89  E-value: 1.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   6 AISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY-------------NGGQAGGVEVSGITQNfDRNGSLEATGRA 72
Cdd:PRK05841   8 AYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFsshldalnaksvvANDRNYGVTGSSNAIS-NKDGEYKPSDGE 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  73 LDLAISGNGFFA--------------TVDNKGQQIYTRSGAFSTDKDNFIVSSAG------------------------- 113
Cdd:PRK05841  87 FHMAYQGKGWFVvgpnkngsmtinkdGFSKKQDNYFTRDGSFARDADGYLVNPEGyyvygidlgkikdgtlnstardead 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 114 ------NKL--------------QGYTVDAKANLQK---------------GNIDDLAISTASLSAKATDSIEF------ 152
Cdd:PRK05841 167 ieklhgNTLsplqipqdltyqpvLTTKVGISVNLNPkdhlkgvqdfflndkGEFIKERFLNQDINALANDDNEPidaitn 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 153 -------------TANF------------------------------------DARATPVASAAFDPADPT--------- 174
Cdd:PRK05841 247 rklnitiqkedgkKEDFvftygdaekgenqfktlgdlkkllkektgldlnlirSEKGAKSPPLLLEIANPSqtpitfsls 326

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 175 --------------------SFTS------SYTAQA--FDSLGNAHTV-SQYFI-NTGSN--------QWNIK-VIADDN 215
Cdd:PRK05841 327 ggiadklglnangmelkkgiSRDSvaikipSYSTEVeiYDKAGDKYLLqSEYYMtNSGDPtssprknqTWEVKsYIVDPK 406

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 216 DVTP-DPAPV---IEFTTEGllaDTSTIPILVsipALGANLIAVEIDLTG---STQYG-ADFGVSTNNPNGYTAGELTGI 287
Cdd:PRK05841 407 NKTPiNTDPTweiVGFDATH---KMKAAPMTL---DFKGNKLTYSLDKSEdhdSSNLSyQDSKLLEASQDGKPRGILRDV 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 288 RVEDNGMIFAQFTNGQSQLQGQLVLADFPNPTALEQ-SNNTSWMQT--------FGSGTPVKGAPGSGVL--GKLTSNML 356
Cdd:PRK05841 481 RIDENGVISLAFSNGVVEPMGRIGIAAFTNDQGLRKvGGNLFEMQEgtingenrPLSGNPILGWDEEGKLkfGKVRHKYL 560

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|
gi 500095799 357 ETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK05841 561 ETSNVDAGNALTNLILMQRGYSMNARAFGTGDDLIKEAIS 600
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-158 1.70e-16

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 81.28  E-value: 1.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   7 ISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYN----------GGQAG--------GVEVSGITQNFDRnGSLEA 68
Cdd:PRK08425   9 VSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqtkliatapkGGLGGqndmqiglGVGVSSTTKIFSQ-GSIQN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  69 TGRALDLAISGNGFFATVDNKGQ-QIYTRSGAFSTDKDNFIVSSAGNKLQGY-------TVDAKANLQKGNIDdlaiSTA 140
Cdd:PRK08425  88 TDKNTDLAIQGDGFFIVSPDGGTtRNYTRDGDFKFDAQGNFVNNGGYVVQGWvsdtdtgTIDSTGPIQNIRID----PGM 163

                        170
                 ....*....|....*...
gi 500095799 141 SLSAKATDSIEFTANFDA 158
Cdd:PRK08425 164 VMPARASTEVSIKANLNS 181
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
5-118 1.85e-16

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 78.25  E-value: 1.85e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   5 IAISGLNATNKQLNTISNNIANVSTYGFKESRAEFAS--IYNGGQAGGVEVSGITQNFD-RNGSLEATGRALDLAISGNG 81
Cdd:COG4787    7 TAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAvpVQGEGLPTRAFAVTETPGTDfSPGPLQQTGRPLDVAIQGDG 86

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 500095799  82 FFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQG 118
Cdd:COG4787   87 WLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLG 123
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 6-134 2.50e-16

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 78.19  E-value: 2.50e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   6 AISGLNATNKQLNTISNNIANVSTYGFKESRAEFA------------------SIYNGGqagGVEVSGITQNfDRNGSLE 67
Cdd:PRK12817   8 SKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSdlvyetldrkgyptndkpEIITGT---GVKATNWIRD-NQQGNLL 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500095799  68 ATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQ-GYTVDAKANLQKGNIDD 134
Cdd:PRK12817  84 TTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRLEiQLEAGVGINNRNTGFDS 151
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 2-157 7.62e-16

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 76.66  E-value: 7.62e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFAS-----IYN--------------GGQAGGVEVSGITQNFDR 62
Cdd:PRK12818   4 GLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSfedvlIENydkkvgnknvkniiGGLSMGSKIDEVNTLFTQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  63 nGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKA----NLQKGNIDDLAIS 138
Cdd:PRK12818  84 -GIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLGRNNATGArepiNVGNGKFSTDADG 162

                        170
                 ....*....|....*....
gi 500095799 139 TASLSAKATDSIeFTANFD 157
Cdd:PRK12818 163 NISLDGNASYKF-NVADFN 180
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 5-114 2.16e-14

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 72.20  E-value: 2.16e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   5 IAISGLNATNKQLNTISNNIANVSTYGFKESRAEFAS--IYNGGQAGGVEVSGITQNFD-RNGSLEATGRALDLAISGNG 81
Cdd:PRK12640   7 TAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAvpVFGEGLPTRVFALASTPGADfSPGPLQTTGRPLDVALQGDG 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 500095799  82 FFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGN 114
Cdd:PRK12640  87 WLAVQAPDGSEAYTRNGSLQVDANGQLRTANGL 119
flgF PRK12689
flagellar basal-body rod protein FlgF;
5-118 7.53e-14

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 70.93  E-value: 7.53e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   5 IAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGG-----------QAGGVEVSGITQNFDRnGSLEATGRAL 73
Cdd:PRK12689   7 VGLSRQMALERQLDVVANNVANVNTNGFKARSSLFQEYLMPGahednfqrpdrRVSYVQDRGTPLDLSQ-GPLEQTKNPL 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 500095799  74 DLAISGNGFFATVDNKGQQiYTRSGAFSTDKDNFIVSSAGNKLQG 118
Cdd:PRK12689  86 DVAIDGDAFLAVQTPQGER-YTRDGALEINAQGQLVTSDGYPVLG 129
flgF PRK12642
flagellar basal-body rod protein FlgF;
5-114 8.46e-14

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 70.46  E-value: 8.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   5 IAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSGITQNF--DRNGSLEATGRALDLAISGNGF 82
Cdd:PRK12642   7 VALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQGKSYlsTEAGPLTKTGNPLDFAVKGDAW 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 500095799  83 FAtVDNKGQQIYTRSGAFSTDKDNFIVSSAGN 114
Cdd:PRK12642  87 FS-FDTPAGQVYTRDGRFTMTSTGELVSVTGY 117
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 319-396 1.05e-13

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 65.75  E-value: 1.05e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500095799  319 TALEQSNNTSWMQTfgSGTPVkgaPGSGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:pfam06429   1 AGLEKGGDNLFRET--DGAPI---LGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
flgF PRK12690
flagellar hook-basal body complex protein;
6-116 1.60e-13

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 69.71  E-value: 1.60e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   6 AISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVS---GITQNFD-RNGSLEATGRALDLAISGNG 81
Cdd:PRK12690   8 TLTRQSGLMREMQVVANNIANASTTGFRREGLVFSEYVKSLDSGEASLSmarASGRQTDlEQGGLTQTGGQFDFAIEGEG 87

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 500095799  82 FFATVDNKGQQIyTRSGAFSTDKDNFIVSSAGNKL 116
Cdd:PRK12690  88 FFMVETPQGERL-TRAGSFTPNAEGELVDPDGNRL 121
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 7-190 8.73e-13

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 69.98  E-value: 8.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799    7 ISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYN-------------GGQAG-----GVEVSGITQNFDRnGSLEA 68
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSqtvkiatspydglGGQNDlsiglGVSISSTTKIFSQ-GSVQT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   69 TGRALDLAISGNGFFATVDNKGQ-QIYTRSGAFSTDKDNFIVSSAGNKLQGYTVDAKANLQK--GNIDDLAISTAS---- 141
Cdd:TIGR02489  88 TNSKTDVAINGDGFFIVSDDGGLtNYYTRDGAFKFDAYGNFVNNSGYIVQGWNRPLEAAESGtmSDWDDQTVDSTRppqn 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 500095799  142 --------LSAKATDSIEFTANFDARATPVASAAFDPADPTSFTSS-YTAQAFDSLGN 190
Cdd:TIGR02489 168 ifidpgmvIPAAATTEVALKANLNAGLNIDTSSNLYALDSTHQTAAdGTTAFYDSSGE 225
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 177-279 1.76e-11

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 60.11  E-value: 1.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  177 TSSYTAQAFDSLGNAHTVSQYFINTGS--NQWNIKViADDNDVTPDPAPVIEFTTEGLLADTStipilvsipaLGANLIA 254
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATgpNTWEVYV-TVDGEVGDGDGTAGTASTAGGLMTGT----------LTFDSIT 69

                          90       100
                  ....*....|....*....|....*
gi 500095799  255 VEIDLTGSTQYGADFGVSTNNPNGY 279
Cdd:pfam07559  70 LDFGLTGSTQYASAFSVTSLSQDGY 94
flgF PRK12641
flagellar basal-body rod protein FlgF;
4-105 1.20e-09

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 58.42  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   4 NIAISGLNATNKQLNT---ISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSGITQNFDRN-GSLEATGRALDLAISG 79
Cdd:PRK12641   3 NSIYKSMIAANKLLEKqaiIANNLANISTTGFKEKFILAIQNHNVKNLYNSDKKITKEYYNLSpGTLRYTGRNLDLFIKD 82

                         90       100
                 ....*....|....*....|....*.
gi 500095799  80 NGFFATVDNKGQQIYTRSGAFSTDKD 105
Cdd:PRK12641  83 NGWLTIKDTNGQEAYTKNGHLKINSK 108
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 287-378 8.82e-09

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 52.25  E-value: 8.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  287 IRVEDNGMIFaqftnGQSQLQGQLVLADFPNPTALEQSNNTswMQTFGSGTPVKGAPGSGVLgkltSNMLETSNVDLTSE 366
Cdd:TIGR02490   9 ITIGADGTIS-----QDGEEVGRLGLVNFDNPNQLQREGDG--LFRATGGGPAPADSNVRVV----QGYLEGSNVNAVSE 77

                          90
                  ....*....|..
gi 500095799  367 LVSLMTAQRNYQ 378
Cdd:TIGR02490  78 MVDMIEAQRAYE 89
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-61 1.25e-08

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 56.43  E-value: 1.25e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500095799   1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASI-----YNGGQAGGVEVSGITQNFD 61
Cdd:COG1256    4 SALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAgptatGAGQVGTGVRVTGIRRIRD 69
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-58 6.07e-08

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 51.27  E-value: 6.07e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500095799   2 SFNIAISGLNATNKQLNTISNNIANVSTYG------FKESRAEFASIYN--GGQAGGVEVSGITQ 58
Cdd:COG1558    6 AFDIAGSGLTAQRLRLNVIASNLANANSTRtsdggpYRRKQVVFEAVLDraGSGAAGVRVAGIVE 70
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-56 3.76e-07

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 49.05  E-value: 3.76e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500095799   2 SFNIAISGLNATNKQLNTISNNIANVSTYG------FKESRAEFASIYNGGQAG-GVEVSGI 56
Cdd:PRK05681   6 SFNIAGSGLSAQSQRLNVISSNIANADSTAapdgdpYRRKQVVFAAELDPGQGTgGVKVAKI 67
flgG PRK12819
flagellar basal-body rod protein FlgG;
282-390 8.06e-07

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 49.88  E-value: 8.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 282 GELTGIRVEDNGMIFAQFTNGQ-SQLQGQLVLADFPNptALEQSNNTSWmqTFGSGTPVKGAPGSGVLgklTSNMLETSN 360
Cdd:PRK12819 145 PEGAKVAVQADGTLYDAVTQNNiARLQTKTVSAEQND--RLVQRENKSF--TLAEGNIANLPNGQGIV---KNGMLENSN 217

                         90       100       110
                 ....*....|....*....|....*....|
gi 500095799 361 VDLTSELVSLMTAQRNYQANTKTISTADQL 390
Cdd:PRK12819 218 VDMTKEMADLMTDQRMIQASQRVMTSFDKI 247
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 1-58 1.27e-06

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 49.65  E-value: 1.27e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500095799    1 MSFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASI----YNGGQAG-GVEVSGITQ 58
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVpaggQGGKQIGtGVKVTSIRR 63
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-398 2.76e-06

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 49.05  E-value: 2.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799   1 MSF-NIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAG-----GVEVSGI---------TQNFDRNGS 65
Cdd:PRK07191   1 MNFiRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQGGvnagnGVNVDGIrrlsqqyvvMQEWQANSQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  66 L------EATGRALDLAISG---------NGFFATVDNKG---------QQIYTRSGAFST---DKDNFIVSsagnklQG 118
Cdd:PRK07191  81 QgyydagEQYFNALELVVGNkstslatglNNFFSALSAATqlpdsppmrQQVIESANAMALrfnNVNNFIVQ------QK 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 119 YTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTAN-----------FDARATPVASAAFDPADPTSFTSSYTAQAFDS 187
Cdd:PRK07191 155 KSIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNNisdlldqrdlqIKKLSGLIEVRVVQQEDGTYRVSVKNGQPLVN 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 188 LGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPA----PVIEFTTEGLLADTSTI------------------------ 239
Cdd:PRK07191 235 GAVAAELAVDTSSVGTQKLTLHFSGATQGMNMSCGgqlgGLNDYELTTLKPLQDSTqemaktvadkfndqltkgfdmnga 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 240 ---PILVSIPALGANLIAVEIDLTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFP 316
Cdd:PRK07191 315 pgkPLFTFNPSDPNGMLQLSAIKPEELALSGDPKPPGDNSNLFELLEIRSQKTDLPGMGNVSLGDAATALVGYIAITSNQ 394

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799 317 NPTALEQSNNtswmqtfgsgtpvkgapgsgVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFN 396
Cdd:PRK07191 395 NHSELENAEN--------------------VRNQAERYWESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLLA 454


                 ..
gi 500095799 397 AV 398
Cdd:PRK07191 455 LV 456
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
359-394 5.90e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 45.49  E-value: 5.90e-06
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 500095799 359 SNVDLTSELVSLMTAQRNYQANTKTISTADQL-TKAL 394
Cdd:COG1558   95 PNVNVVEEMVDMISASRSYEANVEVINTAKSMlLKTL 131
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-32 5.17e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 39.86  E-value: 5.17e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 500095799    3 FNIAISGLNATNKQLNTISNNIANVSTYGF 32
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 3-62 3.21e-04

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 42.80  E-value: 3.21e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500095799   3 FNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAG-----GVEVSGITQNFDR 62
Cdd:PRK12715   4 LNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGsyigaGVSVSSIYRNVDQ 68
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
345-398 3.48e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 42.56  E-value: 3.48e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500095799 345 SGVLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFNAV 398
Cdd:COG1256  425 EALLDQLENQRQSVSGVNLDEEMANLIKFQQAYQANARVITTADEMLDTLLNIV 478
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 3-51 4.64e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 42.23  E-value: 4.64e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 500095799   3 FNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGV 51
Cdd:PRK07521   7 LNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGPAGGQVVGI 55
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 360-394 6.48e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 39.42  E-value: 6.48e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 500095799 360 NVDLTSELVSLMTAQRNYQANTKTISTADQ-LTKAL 394
Cdd:PRK05681  95 NVNVVVEMVDMISASRSYEANVEVLNAAKSmMQKTL 130
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 3-61 6.50e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 41.97  E-value: 6.50e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500095799   3 FNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFA----SIYNGGQAG-GVEVSGITQNFD 61
Cdd:PRK08147   5 INTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAqagsTLTAGGWIGnGVYVSGVQREYD 68
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 21-119 8.36e-04

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 40.60  E-value: 8.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500095799  21 SNNIANVSTYGFKESRAEFASIYNGGQ--AGGVEVSGITQNFD-RNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRS 97
Cdd:PRK12643  23 ANNLANASTPGFRAQLAAMRAVPIDGPslATRTMVTTSTPGVDiSQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRN 102

                         90       100
                 ....*....|....*....|...
gi 500095799  98 GafstdkdNFIVSSAGN-KLQGY 119
Cdd:PRK12643 103 G-------NIQISANGQmTVQGY 118
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 9-39 1.63e-03

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 38.23  E-value: 1.63e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 500095799   9 GLNATNKQLNTISNNIANVSTYGFKESRAEF 39
Cdd:PRK12623  19 GLDASSYRGKVISNNIANVNTKGYKRHYVTF 49
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 359-391 1.77e-03

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 38.49  E-value: 1.77e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 500095799  359 SNVDLTSELVSLMTAQRNYQANTKTISTADQLT 391
Cdd:TIGR01395  95 PNVNVVEEMVDMIEASRSYEANVQVFNTAKSMF 127
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-54 1.89e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 38.25  E-value: 1.89e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500095799   2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQ-AGGVEVS 54
Cdd:PRK12632   7 SLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEARDFDPgSGLVSTG 60
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 2-57 2.20e-03

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 38.11  E-value: 2.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500095799    2 SFNIAISGLNATNKQLNTISNNIANVSTYG------FKESRAEFAS-----IYNGGQAGGVEVSGIT 57
Cdd:TIGR01395   3 IFNVSASALSAQRVRMNVVSSNLANADSTRtpagdpYRRRRPVFEAelfqdRASRPGGSGVKVAKIV 69
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 3-50 2.57e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 40.00  E-value: 2.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 500095799   3 FNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASiyNGGQAGG 50
Cdd:PRK06945   5 LNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAE--AGGQYTG 50
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 357-395 4.24e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 37.09  E-value: 4.24e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 500095799 357 ETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALF 395
Cdd:PRK12632  87 DGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLL 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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