|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 647.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 1 MFENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 81 ELIEMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTL 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYL-KKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 161 PIISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERV 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 321 AKMAKGKFDLDDLADQLRQMQKmggmggimgmmpgmAGMKDKMAAAGLDDKLFGRQIAIIQSMTKAERTNPDLLKHSRKK 400
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKmgplkkl-lgmlpgMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 499973187 401 RIAAGSGTDAAAINKLLKMHRQMAD 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-423 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 584.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 2 FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 82 LIEMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 162 IISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVG 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 242 ITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMAA 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 322 KMAKGKFDLDDLADQLRQMQKMGGMGGIMGMMPGMAGMKDKMAAAGLDDKLFGRQIAIIQSMTKAERTNPDLLKHSRKKR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|..
gi 499973187 402 IAAGSGTDAAAINKLLKMHRQM 423
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQM 422
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-423 |
2.98e-128 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 381.09 E-value: 2.98e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 5 LQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDELIE 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 85 MLGGEGVgIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASlDTRRPAAQEQLRQLGAQANIDTLPIIS 164
Cdd:PRK00771 81 LLGEETE-PLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 165 GQSPTDIAARAVQAAKlgGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 245 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMAAKMA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 325 KGKFDLDDLADQLRQMQKMGGMGGIMGMMPGMAGMKDKMAAAGLDDKLfGRQIAIIQSMTKAERTNPDLLKHSRKKRIAA 404
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIAR 395
|
410
....*....|....*....
gi 499973187 405 GSGTDAAAINKLLKMHRQM 423
Cdd:PRK00771 396 GSGTTVEDVRELLKYYKMM 414
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
1.18e-100 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 301.44 E-value: 1.18e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLStREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLK-KKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 499973187 262 MRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
4.58e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 297.40 E-value: 4.58e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 180 KLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 499973187 260 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
5.94e-86 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 263.63 E-value: 5.94e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLStREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 499973187 262 MRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
110-194 |
4.83e-03 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 38.30 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 110 GSGKTTTSAKIAHRLsTREKKKVLMASLDTrrpaaQEQLRQLGAQANIDTLPIISGqSPTDIAARAVQAAKlGGHDVVIL 189
Cdd:NF041546 10 GVGKTTLATHLAAAL-ARRGYRVLLVDADP-----QGSALDWAAAREDERPFPVVG-LARPTLHRELPSLA-RDYDFVVI 81
|
....*
gi 499973187 190 DTAGR 194
Cdd:NF041546 82 DGPPR 86
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 647.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 1 MFENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 81 ELIEMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTL 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYL-KKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 161 PIISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERV 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 321 AKMAKGKFDLDDLADQLRQMQKmggmggimgmmpgmAGMKDKMAAAGLDDKLFGRQIAIIQSMTKAERTNPDLLKHSRKK 400
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKmgplkkl-lgmlpgMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 499973187 401 RIAAGSGTDAAAINKLLKMHRQMAD 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-423 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 584.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 2 FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 82 LIEMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 162 IISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVG 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 242 ITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMAA 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 322 KMAKGKFDLDDLADQLRQMQKMGGMGGIMGMMPGMAGMKDKMAAAGLDDKLFGRQIAIIQSMTKAERTNPDLLKHSRKKR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|..
gi 499973187 402 IAAGSGTDAAAINKLLKMHRQM 423
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQM 422
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-423 |
2.98e-128 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 381.09 E-value: 2.98e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 5 LQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDELIE 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 85 MLGGEGVgIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASlDTRRPAAQEQLRQLGAQANIDTLPIIS 164
Cdd:PRK00771 81 LLGEETE-PLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 165 GQSPTDIAARAVQAAKlgGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 245 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMAAKMA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 325 KGKFDLDDLADQLRQMQKMGGMGGIMGMMPGMAGMKDKMAAAGLDDKLfGRQIAIIQSMTKAERTNPDLLKHSRKKRIAA 404
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIAR 395
|
410
....*....|....*....
gi 499973187 405 GSGTDAAAINKLLKMHRQM 423
Cdd:PRK00771 396 GSGTTVEDVRELLKYYKMM 414
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
1.18e-100 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 301.44 E-value: 1.18e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLStREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLK-KKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 499973187 262 MRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
4.58e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 297.40 E-value: 4.58e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 180 KLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 499973187 260 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
5.94e-86 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 263.63 E-value: 5.94e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLStREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 499973187 262 MRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
8.43e-80 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 251.87 E-value: 8.43e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 1 MFENLQDRL--------GSILNGLTGRGALSEADvsaaLREVRRALLEADVALDVVRSFTDRVREKAVGaeilKSIKPGQ 72
Cdd:COG0552 1 FFERLKEGLsktrsglgEKLKSLFSGKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 73 MVVKIVHDELIEMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLG 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRL-KAEGKSVLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 153 AQANIdtlPIISGQSPTDIAA---RAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKK------RSNPHEILLVADS 223
Cdd:COG0552 152 ERVGV---PVIAQKEGADPAAvafDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRvikkldPDAPHEVLLVLDA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499973187 224 LTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILG 296
Cdd:COG0552 229 TTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-294 |
5.98e-72 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 227.64 E-value: 5.98e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAhRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLA-RYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 499973187 262 MRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
3.65e-69 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 225.24 E-value: 3.65e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 21 ALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDELIEMLGgEGVGIDL----- 95
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLS-VGDLFDLieeik 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 96 HAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTReKKKVLMASLDTRRPAAQEQLRQLGAQANIdtlPIISGQ---SPTDIA 172
Cdd:PRK14974 136 SKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKHKygaDPAAVA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 173 ARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDG 252
Cdd:PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 499973187 253 DGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILG 296
Cdd:PRK14974 292 DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-296 |
2.20e-67 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 219.97 E-value: 2.20e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 6 QDRLGSILNGLTGRGALSEAdvsaALREVRRALLEADVALDVVRSFTDRVREKAVGaeilKSIKPGQMVVKIVHDELIEM 85
Cdd:PRK10416 28 RENFGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKELLKEELAEI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 86 LGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIdtlPIISG 165
Cdd:PRK10416 100 LEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV---PVIAQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 166 QSPTDIAA---RAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKK------RSNPHEILLVADSLTGQDAVNLARNF 236
Cdd:PRK10416 176 KEGADPASvafDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRvikkadPDAPHEVLLVLDATTGQNALSQAKAF 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 237 DERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILG 296
Cdd:PRK10416 256 HEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-294 |
1.03e-61 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 201.26 E-value: 1.03e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 101 VVVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIdtlPIISGQSPTDIAA---RAVQ 177
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYL-KNQGKKVVLAAGDTFRAAAVEQLEEWAERLGV---PVISQNEGADPAAvafDAIQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 178 AAKLGGHDVVILDTAGRTHIDEPLMVEMADIKK------RSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMD 251
Cdd:cd17874 77 AAKARGIDVVLIDTAGRLHTKKNLMEELKKIKRvikkkdPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499973187 252 GDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:cd17874 157 GTAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-424 |
9.59e-60 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 203.53 E-value: 9.59e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 4 NLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKPGQMVVKIVHDELI 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 84 EMLGGEGVGIDLHAPAPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASlDTRRPAAQEQLRQLGAQANIDTLPII 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCA-DTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 164 SGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGIT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 244 GLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGDIVSLVERAAENIDAEKAAAMAAKM 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 324 AKGKFDLDDLADQLRQMQKMGGMGGIMGMMPGMAGmkDKMAAAGLDD--KLFGRQIAIIQSMTKAE--RTNPDLLKH-SR 398
Cdd:TIGR01425 323 KEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSH--PMMSKGNEEEtsAKIKVFMTIMDSMTDREldSTAKTMLKDpSR 400
|
410 420
....*....|....*....|....*.
gi 499973187 399 KKRIAAGSGTDAAAINKLLKMHRQMA 424
Cdd:TIGR01425 401 IRRVARGSGRDIREVNELLEQYKLFA 426
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
5.89e-55 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 183.16 E-value: 5.89e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLStreKK--KVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAA 179
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQ---KKgyKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 180 KLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 259
Cdd:cd17875 79 KKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 499973187 260 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294
Cdd:cd17875 159 LSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
9-296 |
7.28e-36 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 136.92 E-value: 7.28e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 9 LGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKpgqmvvkivhDELIEMLGG 88
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEAWRALL----------EALARRLPV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 89 EGVGIDLHapaPVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLgaqANIDTLPIISGQSP 168
Cdd:COG1419 156 AEDPLLDE---GGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTY---ARILGVPVEVAYDP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 169 TDIAAravQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVAdSLT--GQDAVNLARNFdERVGITGLV 246
Cdd:COG1419 230 EELKE---ALERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVL-SATtkYEDLKEIVEAF-SSLGLDGLI 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 499973187 247 LTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSE-LEEFHPRRIADRILG 296
Cdd:COG1419 305 LTKLDETASLGSILNLLIRTGLPLSYITNGQRVPEdIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
4.63e-35 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 130.43 E-value: 4.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWL-LSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERV----------GITGLVLTRMD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 499973187 252 G-DGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIAD 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
5.74e-27 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 107.64 E-value: 5.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRqlgAQANIDTLPIISGQSPTDIAAravQAAKL 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLK---TYAEIMGIPVEVAEDPEDLAD---ALERL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLV-ADSLTGQDAVNLARNFdERVGITGLVLTRMDGDGRGGAAL 260
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVlSATTKAKDLKEIIERF-SPLGYRGLILTKLDETTSLGSVL 154
|
170 180 190
....*....|....*....|....*....|....*
gi 499973187 261 SMRAVTGKPIKLIGVGEKMSE-LEEFHPRRIADRI 294
Cdd:cd17873 155 SVLAESQLPVSYVTTGQRVPEdIEVASPLRLARLL 189
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
327-424 |
9.37e-24 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 95.16 E-value: 9.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 327 KFDLDDLADQLRQMQK------------MggmggimgmmpgmagmKDKMAAAGLDDKLFGRQIAIIQSMTKAERTNPDLL 394
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKmgplskilsmipG----------------MGKKDDDIDSEKKLKRIEAIIDSMTPKERDNPDII 64
|
90 100 110
....*....|....*....|....*....|
gi 499973187 395 KHSRKKRIAAGSGTDAAAINKLLKMHRQMA 424
Cdd:pfam02978 65 NASRKRRIARGSGTSVQEVNRLLKQFKQMK 94
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
4.71e-21 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 87.14 E-value: 4.71e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499973187 5 LQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGaeiLKSIKPGQMVVKIVHDEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
33-296 |
1.08e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 91.49 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 33 EVRRALLEADVALDVVRSFTDRVREKAVGAEIlksikpgqMVVKIVHDELIEMLGGEGVGIDLHAPapvVVMMVGLQGSG 112
Cdd:PRK05703 165 ELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDILKQGG---VVALVGPTGVG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 113 KTTTSAKIAHRLSTR-EKKKVLMASLDTRRPAAQEQLRQLgaqANIDTLPIISGQSPTDiAARAVQaaKLGGHDVVILDT 191
Cdd:PRK05703 234 KTTTLAKLAARYALLyGKKKVALITLDTYRIGAVEQLKTY---AKIMGIPVEVVYDPKE-LAKALE--QLRDCDVILIDT 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 192 AGRTHIDEPLMVEMAD-IKKRSNPHEILLVAdSLTGQ--DAVNLARNFDeRVGITGLVLTRMDGDGRGGAALSMRAVTGK 268
Cdd:PRK05703 308 AGRSQRDKRLIEELKAlIEFSGEPIDVYLVL-SATTKyeDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGL 385
|
250 260
....*....|....*....|....*....
gi 499973187 269 PIKLIGVGEKMSE-LEEFHPRRIADRILG 296
Cdd:PRK05703 386 PISYLTNGQRVPDdIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
3.87e-19 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 81.83 E-value: 3.87e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499973187 9 LGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGaEILKSIKPGQMVVKIVHDELIEML 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
31-193 |
1.07e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 77.38 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 31 LREVRRALLEADVALDVVRSFTDRVREKAvgaeilksikPGQMVVKIVHDELIEMLGGEGVGIDLHaPAPVVVMMVGLQG 110
Cdd:TIGR03499 136 RAKLYERLLEAGVSEELARELLEKLPEDA----------DAEDAWRWLREALEGMLPVKPEEDPIL-EQGGVIALVGPTG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 111 SGKTTTSAKIAHRLS-TREKKKVLMASLDTRRPAAQEQLRQLgaqANIDTLPIISGQSPTDIaARAVQaaKLGGHDVVIL 189
Cdd:TIGR03499 205 VGKTTTLAKLAARFAlEHGKKKVALITTDTYRIGAVEQLKTY---AEILGIPVKVARDPKEL-REALD--RLRDKDLILI 278
|
....
gi 499973187 190 DTAG 193
Cdd:TIGR03499 279 DTAG 282
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
103-281 |
8.52e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 67.01 E-value: 8.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 103 VMMVGLQGSGKTTTSAKIAHRLSTReKKKVLMASLDTRRPAAQEQLrqlgaQANIDTL--PIISGQsptDIAA--RAVQA 178
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQL-----QDYVKTIgfEVIAVR---DEAAmtRALTY 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 179 AKLGGH-DVVILDTAGRTHIDEPLMVEMADIKKRSNPHEI-LLVADSLTGQDAVNLARNFDErVGITGLVLTRMDGDGRG 256
Cdd:PRK11889 315 FKEEARvDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS 393
|
170 180
....*....|....*....|....*
gi 499973187 257 GAALSMRAVTGKPIKLIGVGEKMSE 281
Cdd:PRK11889 394 GELLKIPAVSSAPIVLMTDGQDVKK 418
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-309 |
1.42e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 66.94 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLSTREK-KKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARavqaak 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER------ 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFdERVGITGLVLTRMDGDGRGGAAL 260
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF-AHAKPQGVVLTKLDETGRFGSAL 504
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499973187 261 SMRAVTGKPIKLIGVGEKMSelEEFHPRRIADRILGMGDIvslvERAAE 309
Cdd:PRK12727 505 SVVVDHQMPITWVTDGQRVP--DDLHRANAASLVLRLEDL----RRAAD 547
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
24-281 |
9.10e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 59.76 E-value: 9.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 24 EADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKsikpgQMVVKIVHDELIEMLGGEGVgidlHAPAPVVV 103
Cdd:PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT-----EEVIEYILEDMSSHFNTENV----FEKEVQTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 104 MMVGLQGSGKTTTSAKIAHRLSTReKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAKLgg 183
Cdd:PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV-- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 184 hDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEI-LLVADSLTGQDAVNLARNFDErVGITGLVLTRMDGDGRGGAALSM 262
Cdd:PRK06731 156 -DYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233
|
250
....*....|....*....
gi 499973187 263 RAVTGKPIKLIGVGEKMSE 281
Cdd:PRK06731 234 PAVSSAPIVLMTDGQDVKK 252
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-279 |
1.20e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 57.28 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARavqaakl 181
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHID-EPL--MVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGA 258
Cdd:PRK12724 298 DGSELILIDTAGYSHRNlEQLerMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377
|
170 180
....*....|....*....|.
gi 499973187 259 ALSMRAVTGKPIKLIGVGEKM 279
Cdd:PRK12724 378 FLELADTYSKSFTYLSVGQEV 398
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
102-281 |
1.78e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 56.65 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLSTR-EKKKVLMASLDTRRPAAQEQLRQLGaqaNIDTLPIISGQSPTDIaarAVQAAK 180
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRfGASKVALLTTDSYRIGGHEQLRIFG---KILGVPVHAVKDGGDL---QLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVN-LARNFDERVG--------ITGLVLTRMD 251
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAGqpkaalpdLAGCILTKLD 292
|
170 180 190
....*....|....*....|....*....|
gi 499973187 252 GDGRGGAALSMRAVTGKPIKLIGVGEKMSE 281
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
102-296 |
8.40e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 54.36 E-value: 8.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAHRLsTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDtlpIISGQSPTDIAARAVQAAKL 181
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE---LIVATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMADIKKRSNPHEILLVADS-LTGQDAVNLARNFDErVGITGLVLTRMDGDGRGGAAL 260
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLY 362
|
170 180 190
....*....|....*....|....*....|....*...
gi 499973187 261 SMRAVTGKPIKLIGVGEKMSElEEFHP--RRIADRILG 296
Cdd:PRK12726 363 TVMQETNLPVLYMTDGQNITE-NIFRPksRWLAERFVG 399
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
34-295 |
9.67e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 54.19 E-value: 9.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 34 VRRALLEADVALDVVRSFTDRV---REKAVGAEILKSIKPGQMVVkIVHDELIEMLGgegvgidlhapapvVVMMVGLQG 110
Cdd:PRK14721 137 VLRTLLSAGFSPLLSRHLLEKLpadRDFEQSLKKTISLLTLNLRT-IGGDEIIEQGG--------------VYALIGPTG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 111 SGKTTTSAKIAHRLSTRE-KKKVLMASLDTRRPAAQEQLRQLGaqanidTLPIISGQSPTDIAARAVQAAKLGGHDVVIL 189
Cdd:PRK14721 202 VGKTTTTAKLAARAVIRHgADKVALLTTDSYRIGGHEQLRIYG------KLLGVSVRSIKDIADLQLMLHELRGKHMVLI 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 190 DTAGRTHIDEPLMVEMADIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSmrAVTGKP 269
Cdd:PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD--AVIRRK 353
|
250 260
....*....|....*....|....*....
gi 499973187 270 IKLIGV--GEKMSE-LEEFHPRRIADRIL 295
Cdd:PRK14721 354 LVLHYVtnGQKVPEdLHEANSRYLLHRIF 382
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
102-242 |
3.18e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIAhRLSTREKKKVLMASLDTRRPAAQEQLRqlgaqaNIDTLPIISGQSPTDIAARAVQAAKL 181
Cdd:smart00382 4 VILIVGPPGSGKTTLARALA-RELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499973187 182 GGHDVVILDTAGRTHIDEPLMVEMA-------DIKKRSNPHEILLVADSLTGQDAVNLARNFDERVGI 242
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLleelrllLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
22-262 |
2.16e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 46.82 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 22 LSEADVSAALREVRRALLEADVALDVVRSFtDRVREKAVGAeILKSIKpgqmvvkiVHDELIEMLGgegvgidlhapaPV 101
Cdd:PRK12723 118 LRENDFSESYIKDINEFIKKEFSLSDLDDY-DKVRDSVIIY-IAKTIK--------CSGSIIDNLK------------KR 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 102 VVMMVGLQGSGKTTTSAKIA--HRLSTREKKK-VLMASLDTRRPAAQEQLRQLGaqaNIDTLPIISGQSPTDIAARAVQA 178
Cdd:PRK12723 176 VFILVGPTGVGKTTTIAKLAaiYGINSDDKSLnIKIITIDNYRIGAKKQIQTYG---DIMGIPVKAIESFKDLKEEITQS 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 179 AKLgghDVVILDTAGRTHIDEPLMVEMADI----KKRSNPHeiLLVADSLTGQDAVNLARNFdERVGITGLVLTRMDGDG 254
Cdd:PRK12723 253 KDF---DLVLVDTIGKSPKDFMKLAEMKELlnacGRDAEFH--LAVSSTTKTSDVKEIFHQF-SPFSYKTVIFTKLDETT 326
|
....*...
gi 499973187 255 RGGAALSM 262
Cdd:PRK12723 327 CVGNLISL 334
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
21-256 |
4.52e-04 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 42.48 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 21 ALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVGAEILKSIKP--GQMVVKIVHDELIEMLGGEGVGIDLHAP 98
Cdd:COG0489 10 LLREEAQALLLLLLLLLLLLRLEEAAAAAALAAAAPAAAAPAPLPPAPALllLLLLLLGLLLLLLLALALLLLLLLLLLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 99 APVVVMMV--GLQGSGKTTTSAKIAHRLStREKKKVLMASLDTRRPAaqeQLRQLGAQANIDTLPIISGQSPTDIAARAV 176
Cdd:COG0489 90 LLLEVIAVtsGKGGEGKSTVAANLALALA-QSGKRVLLIDADLRGPS---LHRMLGLENRPGLSDVLAGEASLEDVIQPT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 177 QAAKL-----------------------------GGHDVVILDTA-GRTHIDEPLMVEMADikkrsnphEILLVADS-LT 225
Cdd:COG0489 166 EVEGLdvlpagplppnpsellaskrlkqlleelrGRYDYVIIDTPpGLGVADATLLASLVD--------GVLLVVRPgKT 237
|
250 260 270
....*....|....*....|....*....|...
gi 499973187 226 GQDAVNLARNFDERVG--ITGLVLTRMDGDGRG 256
Cdd:COG0489 238 ALDDVRKALEMLEKAGvpVLGVVLNMVCPKGER 270
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
110-194 |
4.83e-03 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 38.30 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 110 GSGKTTTSAKIAHRLsTREKKKVLMASLDTrrpaaQEQLRQLGAQANIDTLPIISGqSPTDIAARAVQAAKlGGHDVVIL 189
Cdd:NF041546 10 GVGKTTLATHLAAAL-ARRGYRVLLVDADP-----QGSALDWAAAREDERPFPVVG-LARPTLHRELPSLA-RDYDFVVI 81
|
....*
gi 499973187 190 DTAGR 194
Cdd:NF041546 82 DGPPR 86
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
80-190 |
7.34e-03 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 37.97 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 80 DELIEMLGGegvGIdlhaPAPVVVMMVGLQGSGKTTTSAKIAHRlSTREKKKVLMASLDTRRPAAQEQLRQLG------- 152
Cdd:COG0467 7 PGLDELLGG---GL----PRGSSTLLSGPPGTGKTTLALQFLAE-GLRRGEKGLYVSFEESPEQLLRRAESLGldleeyi 78
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 499973187 153 AQAN---IDTLPIISGQSPTDIAARAVQAAKLGGHDVVILD 190
Cdd:COG0467 79 ESGLlriIDLSPEELGLDLEELLARLREAVEEFGAKRVVID 119
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
98-196 |
9.19e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 38.34 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973187 98 PAPVVVMMVGLQGSGKTTTSAKIAHRLSTR--------EKKKVLMASLDTRRPAAQEQLRQLGA---------QANIDTL 160
Cdd:COG3598 11 PEGGVTLLAGPPGTGKSFLALQLAAAVAAGgpwlgrrvPPGKVLYLAAEDDRGELRRRLKALGAdlglpfadlDGRLRLL 90
|
90 100 110
....*....|....*....|....*....|....*.
gi 499973187 161 PIISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTH 196
Cdd:COG3598 91 SLAGDLDDTDDLEALERAIEEEGPDLVVIDPLARVF 126
|
|
| |
