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Conserved domains on  [gi|499973138|ref|WP_011653856|]
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MULTISPECIES: YciI-like protein [Rhizobium]

Protein Classification

YciI family protein( domain architecture ID 10014099)

YciI family protein similar to Haemophilus influenzae YciI (HI0828) and Burkholderia phenoliruptrix 5-chlorohydroxyhydroquinone dehydrochlorinase, which is involved in the biodegradation of 2,4,5-trichlorophenoxyacetate

CATH:  3.30.70.1060

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK12865 PRK12865
YciI-like protein; Reviewed
1-97 7.97e-68

YciI-like protein; Reviewed


:

Pssm-ID: 171782  Cd Length: 97  Bit Score: 197.75  E-value: 7.97e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDGKPCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:PRK12865  1 MLFALLCKDKPGHLNVRMDTRPTHLEYLNKLNAEGTLKIAGPFLDDDGKPCGSLVIVKAETKEAAKALADADPYAKAGLF 80
                        90
                ....*....|....*..
gi 499973138 81 ESVEVKAYNWVFNKPEA 97
Cdd:PRK12865 81 ESVEVKAYNWVFNNPEA 97
 
Name Accession Description Interval E-value
PRK12865 PRK12865
YciI-like protein; Reviewed
1-97 7.97e-68

YciI-like protein; Reviewed


Pssm-ID: 171782  Cd Length: 97  Bit Score: 197.75  E-value: 7.97e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDGKPCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:PRK12865  1 MLFALLCKDKPGHLNVRMDTRPTHLEYLNKLNAEGTLKIAGPFLDDDGKPCGSLVIVKAETKEAAKALADADPYAKAGLF 80
                        90
                ....*....|....*..
gi 499973138 81 ESVEVKAYNWVFNKPEA 97
Cdd:PRK12865 81 ESVEVKAYNWVFNNPEA 97
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
1-96 1.51e-37

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 121.08  E-value: 1.51e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDgkpCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:COG2350   1 MLFAVILTDKPDSLEERDALRPAHLAYLKELYEEGRLLAAGPLLDDD---TGGLIIAEADSREEAEALAAADPYVKAGVV 77
                        90
                ....*....|....*.
gi 499973138 81 ESVEVKAYNWVFNKPE 96
Cdd:COG2350  78 ASVEVREWKPVLGALA 93
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
2-86 1.08e-28

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 98.97  E-value: 1.08e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138   2 LFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDGKPC------GSLIIVEAESKEAARALADADPYA 75
Cdd:pfam03795  1 LYAILAYDKPASLEERAALRAAHLAYLEQLKKEGVLLASGPTLVIDGPFAetkeqlGGFYIIEAADLDEAIAIAAGDPFV 80
                         90
                 ....*....|.
gi 499973138  76 KAGLFESVEVK 86
Cdd:pfam03795 81 AAGLYEERPVK 91
 
Name Accession Description Interval E-value
PRK12865 PRK12865
YciI-like protein; Reviewed
1-97 7.97e-68

YciI-like protein; Reviewed


Pssm-ID: 171782  Cd Length: 97  Bit Score: 197.75  E-value: 7.97e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDGKPCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:PRK12865  1 MLFALLCKDKPGHLNVRMDTRPTHLEYLNKLNAEGTLKIAGPFLDDDGKPCGSLVIVKAETKEAAKALADADPYAKAGLF 80
                        90
                ....*....|....*..
gi 499973138 81 ESVEVKAYNWVFNKPEA 97
Cdd:PRK12865 81 ESVEVKAYNWVFNNPEA 97
PRK12863 PRK12863
YciI-like protein; Reviewed
1-95 2.33e-42

YciI-like protein; Reviewed


Pssm-ID: 183800  Cd Length: 94  Bit Score: 133.49  E-value: 2.33e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLnaEGTLKIAGPFLDDDGKPC-GSLIIVEAESKEAARALADADPYAKAGL 79
Cdd:PRK12863  1 MLFAILCTDKPGHLEVRLATRPAHLAYLETL--EGRLLAAGPLLDDDGKPMvGSLVVVEAESRAAAEAFAAADPFAKAGL 78
                        90
                ....*....|....*.
gi 499973138 80 FESVEVKAYNWVFNKP 95
Cdd:PRK12863 79 YESVDIKPFNKAFGNG 94
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
1-96 1.51e-37

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 121.08  E-value: 1.51e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDgkpCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:COG2350   1 MLFAVILTDKPDSLEERDALRPAHLAYLKELYEEGRLLAAGPLLDDD---TGGLIIAEADSREEAEALAAADPYVKAGVV 77
                        90
                ....*....|....*.
gi 499973138 81 ESVEVKAYNWVFNKPE 96
Cdd:COG2350  78 ASVEVREWKPVLGALA 93
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
2-86 1.08e-28

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 98.97  E-value: 1.08e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138   2 LFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDDDGKPC------GSLIIVEAESKEAARALADADPYA 75
Cdd:pfam03795  1 LYAILAYDKPASLEERAALRAAHLAYLEQLKKEGVLLASGPTLVIDGPFAetkeqlGGFYIIEAADLDEAIAIAAGDPFV 80
                         90
                 ....*....|.
gi 499973138  76 KAGLFESVEVK 86
Cdd:pfam03795 81 AAGLYEERPVK 91
PRK11370 PRK11370
YciI family protein;
1-92 1.86e-25

YciI family protein;


Pssm-ID: 183103  Cd Length: 99  Bit Score: 90.80  E-value: 1.86e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPF----LDDDGKP--CGSLIIVEAESKEAARALADADPY 74
Cdd:PRK11370  1 MLYVIYAQDVPNSLEKRLSVRPAHLARLQLLQDEGRLLTAGPMpaidSNDPGEAgfTGSTVIAEFESLEAAQAWADADPY 80
                        90
                ....*....|....*...
gi 499973138 75 AKAGLFESVEVKAYNWVF 92
Cdd:PRK11370 81 VAAGVYARVIVKPFKKVL 98
PRK12866 PRK12866
YciI-like protein; Reviewed
1-91 1.66e-08

YciI-like protein; Reviewed


Pssm-ID: 237238  Cd Length: 97  Bit Score: 47.41  E-value: 1.66e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  1 MLFALLCKDKPGHLNVRMDTRPTHIEHLNKLNAEGTLKIAGPFLDddgKPCGSLIIVEAESKEAARALADADPYAKAGLF 80
Cdd:PRK12866  1 MHYLLTYDLVDDYLERREAYRAEHLALAQAATERGELLLAGALAD---PADGAVLVFEGDSPAAAEAFARADPYVRNGLV 77
                        90
                ....*....|.
gi 499973138 81 ESVEVKAYNWV 91
Cdd:PRK12866 78 KSWRVRPWTVV 88
PRK12864 PRK12864
YciI-like protein; Reviewed
2-91 6.96e-07

YciI-like protein; Reviewed


Pssm-ID: 183801  Cd Length: 89  Bit Score: 43.02  E-value: 6.96e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499973138  2 LFALLCKDKpghLNVRMDTRPTHIEHLNKLNAEGTLKIAGPfLDDDGKPCGsliIVEAESKEAARALADADPYAKAGLFE 81
Cdd:PRK12864  6 LWGTYCEDA---LEKRAPFREAHLDRLAKLKEQGILITLGP-TKDLTYVFG---IFEAEDEETVRQLIEADPYWQNGIWT 78
                        90
                ....*....|
gi 499973138 82 SVEVkaYNWV 91
Cdd:PRK12864 79 EYEV--YPWI 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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