|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
184-525 |
8.10e-170 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 487.36 E-value: 8.10e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 184 SLYQELQRAKEQPQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVD 263
Cdd:COG3829 117 RLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVN 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 264 CAALPATLIENELFGHERGAFTGAD-HRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVR 342
Cdd:COG3829 197 CAAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 343 IVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWP 422
Cdd:COG3829 277 IIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERK-EDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWP 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 423 GNVRELENCIESAVVLCEGEILE-EHLPLPDVDRAALPppaaaqgvnAPTAPAPLDAgllPLAEVERRHILRVLDAVKGN 501
Cdd:COG3829 356 GNVRELENVIERAVVLSEGDVITpEHLPEYLLEEAEAA---------SAAEEGSLKE---ALEEVEKELIEEALEKTGGN 423
|
330 340
....*....|....*....|....
gi 499873228 502 RTAAARVLAIGRNTLARKLKEYGL 525
Cdd:COG3829 424 KSKAAKALGISRSTLYRKLKKYGI 447
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
39-525 |
2.51e-125 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 377.13 E-value: 2.51e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 39 GREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHL--PEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGE 116
Cdd:TIGR01817 15 SAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWseEGFAPIRYRVGEGAIGQIVATGNSLVVPDVAAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 117 QRFFADIdRMTGYRTTSLLAVPLRdGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTA---------LQSTSLYQ 187
Cdd:TIGR01817 95 PLFLDRL-SLYDPGPVPFIGVPIK-ADSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTvrlhrlvaqRRERLIAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 188 ELQRAK----EQPQVPVG--YFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIK 261
Cdd:TIGR01817 173 AVQLSKqlrdKAPEIARRrsGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVK 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 262 VDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDV 341
Cdd:TIGR01817 253 VNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 342 RIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLtPPRLSAAAVERLKRYRW 421
Cdd:TIGR01817 333 RLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRER-REDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKW 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 422 PGNVRELENCIESAVVLCEGEILEE---------------HLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEV 486
Cdd:TIGR01817 411 PGNVRELENCLERTATLSRSGTITRsdfscqsgqclspmlAKTCPHGHISIDPLAGTTPPHSPASAALPGEPGLSGPTLS 490
|
490 500 510
....*....|....*....|....*....|....*....
gi 499873228 487 ERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:TIGR01817 491 ERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNI 529
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
137-525 |
8.13e-113 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 344.08 E-value: 8.13e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 137 VPLRDgDGALYGVLqVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQPQVPVGYFFNR------IIGE 210
Cdd:PRK05022 115 LPLFV-DGRLIGAL-TLDALDPGQFDAFSDEELRALAALAAATLRNALLIEQLESQAELPQDVAEFLRQEalkegeMIGQ 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 211 SPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHR 290
Cdd:PRK05022 193 SPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 291 VPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKV 370
Cdd:PRK05022 273 RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 371 VEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGE-------I 443
Cdd:PRK05022 353 FPLSVPPLRERG-DDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivtL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 444 LEEHLPLPDvdraalpppaAAQGVNAPTAPAPLDAGLLPLAEV----ERRHILRVLDAVKGNRTAAARVLAIGRNTLARK 519
Cdd:PRK05022 432 EAQHLDLPA----------EVALPPPEAAAAPAAVVSQNLREAteafQRQLIRQALAQHQGNWAAAARALELDRANLHRL 501
|
....*.
gi 499873228 520 LKEYGL 525
Cdd:PRK05022 502 AKRLGL 507
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
183-524 |
9.91e-108 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 333.01 E-value: 9.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 183 TSLYQELQRAKE-----QPQVP--VGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVH-VNGpr 254
Cdd:NF041552 238 KNLSKELEKAKEkleylEEEVKkiSEDSFGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHqASG-- 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 255 RDQPFIKVDCAALPATLIENELFGHERGAFTGADHR-VPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGG 333
Cdd:NF041552 316 RKGPFVPVNCSAIPEELFESEFFGYEEGAFTGALKKgKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGG 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 334 TQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAV 413
Cdd:NF041552 396 EKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERK-EDIPLLINYFLKEICKENNKEIPKIDKEVY 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 414 ERLKRYRWPGNVRELENCIESAVVLC-EGEILEEHLP---LPDVDRAALPPPaaaqgvnaptaPAPLDagllpLAE---- 485
Cdd:NF041552 475 DILQNYKWKGNIRELKNTIEHLVVLSkNGTITKDSIPeyiLESVKKKEDEEG-----------DYPLD-----LNKavek 538
|
330 340 350
....*....|....*....|....*....|....*....
gi 499873228 486 VERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYG 524
Cdd:NF041552 539 LEIDTIKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
207-373 |
1.59e-104 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 310.10 E-value: 1.59e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 207 IIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTG 286
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 287 ADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYY 366
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 499873228 367 RIKVVEV 373
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
37-198 |
3.13e-25 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 102.67 E-value: 3.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 37 LVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAH---LPEVSQIRVKLGQGVAGTVAKAGHAINVPDP 113
Cdd:COG3605 12 AVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEglnPEAVGKVRLPLGEGLVGLVAERGEPLNLADA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 114 RGEQRF-FADIDRMTGYRttSLLAVPLRDGdGALYGVLQVLNRRgEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRA 192
Cdd:COG3605 92 ASHPRFkYFPETGEEGFR--SFLGVPIIRR-GRVLGVLVVQSRE-PREFTEEEVEFLVTLAAQLAEAIANAELLGELRAA 167
|
....*.
gi 499873228 193 KEQPQV 198
Cdd:COG3605 168 LAELSL 173
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
43-190 |
5.23e-22 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 92.44 E-value: 5.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 43 DLDAFLQTLMDRIAITLQADRGTLWLLDPA-RRELFSRAAH--LPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRF 119
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDENdRGELVLVAADglTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499873228 120 FadIDRMTGYR-TTSLLAVPLRdGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQ 190
Cdd:smart00065 81 A--EDLLGRYQgVRSFLAVPLV-ADGELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLYEELR 149
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
212-377 |
2.39e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.67 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 212 PQLQAIYRLVRKAA--PTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHErgaftgADH 289
Cdd:cd00009 1 VGQEEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 290 RVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVggtqaVKVDVRIVAATHRDLarmvaEGRFREDLYYRIK 369
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
....*...
gi 499873228 370 vVEVVLPP 377
Cdd:cd00009 145 -IRIVIPL 151
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
43-180 |
1.39e-20 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 87.53 E-value: 1.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 43 DLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHLPEVSQIRVKLGQGVagTVAKAGHAINVPDPRGEQRFFAD 122
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPDADGLEYLPPGARWLKAAGLEIPPGTGV--TVLRTGRPLVVPDAAGDPRFLDP 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 499873228 123 IDRMTGYRTTSLLAVPLRDgDGALYGVLQVLNRRgeDRFTDEDTQRLTAIASQVSTAL 180
Cdd:pfam01590 79 LLLLRNFGIRSLLAVPIID-DGELLGVLVLHHPR--PPFTEEELELLEVLADQVAIAL 133
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
230-367 |
8.32e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 230 TVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIE--NELFGHERGAFTGADHRVPGKFEAA---SGGTVF 304
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499873228 305 IDEIGELPLPVQGKLLRVIqdrEFERVGGTQAVKVDVRIVAATHR--DLARMVAEGRFREDLYYR 367
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
184-525 |
8.10e-170 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 487.36 E-value: 8.10e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 184 SLYQELQRAKEQPQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVD 263
Cdd:COG3829 117 RLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVN 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 264 CAALPATLIENELFGHERGAFTGAD-HRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVR 342
Cdd:COG3829 197 CAAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 343 IVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWP 422
Cdd:COG3829 277 IIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERK-EDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWP 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 423 GNVRELENCIESAVVLCEGEILE-EHLPLPDVDRAALPppaaaqgvnAPTAPAPLDAgllPLAEVERRHILRVLDAVKGN 501
Cdd:COG3829 356 GNVRELENVIERAVVLSEGDVITpEHLPEYLLEEAEAA---------SAAEEGSLKE---ALEEVEKELIEEALEKTGGN 423
|
330 340
....*....|....*....|....
gi 499873228 502 RTAAARVLAIGRNTLARKLKEYGL 525
Cdd:COG3829 424 KSKAAKALGISRSTLYRKLKKYGI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
168-524 |
1.59e-143 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 419.37 E-value: 1.59e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 168 RLTAIASQVSTALQSTSLYQELQRAKEqpqvpvgyffnrIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARA 247
Cdd:COG2204 106 DLEELLAAVERALERRRLRRENAEDSG------------LIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 248 VHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDRE 327
Cdd:COG2204 174 IHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQERE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 328 FERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLtPPR 407
Cdd:COG2204 254 FERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERR-EDIPLLARHFLARFAAELGK-PVK 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 408 LSAAAVERLKRYRWPGNVRELENCIESAVVLCEG-EILEEHLPlpdvdraalpppaaaqgvnaptapapldaglLPLAEV 486
Cdd:COG2204 332 LSPEALEALLAYDWPGNVRELENVIERAVILADGeVITAEDLP-------------------------------EALEEV 380
|
330 340 350
....*....|....*....|....*....|....*...
gi 499873228 487 ERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYG 524
Cdd:COG2204 381 ERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
199-524 |
3.75e-128 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 387.33 E-value: 3.75e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 199 PVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFG 278
Cdd:COG3284 315 PAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFG 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 279 HERGAFTGADHR-VPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAE 357
Cdd:COG3284 395 YEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAA 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 358 GRFREDLYYRIKVVEVVLPPLRERgaEDIERLARHFVAAVARRHRltPPRLSAAAVERLKRYRWPGNVRELENCIESAVV 437
Cdd:COG3284 475 GRFREDLYYRLNGLTLTLPPLRER--EDLPALIEHLLRELAAGRG--PLRLSPEALALLAAYPWPGNVRELRNVLRTALA 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 438 LCEGEILE-EHLPlPDVdraalpppaaaQGVNAPTAPAPlDAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTL 516
Cdd:COG3284 551 LADGGVITvEDLP-DEL-----------RAELAAAAPAA-AAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTL 617
|
....*...
gi 499873228 517 ARKLKEYG 524
Cdd:COG3284 618 YRKLKRYG 625
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
39-525 |
2.51e-125 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 377.13 E-value: 2.51e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 39 GREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHL--PEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGE 116
Cdd:TIGR01817 15 SAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWseEGFAPIRYRVGEGAIGQIVATGNSLVVPDVAAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 117 QRFFADIdRMTGYRTTSLLAVPLRdGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTA---------LQSTSLYQ 187
Cdd:TIGR01817 95 PLFLDRL-SLYDPGPVPFIGVPIK-ADSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTvrlhrlvaqRRERLIAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 188 ELQRAK----EQPQVPVG--YFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIK 261
Cdd:TIGR01817 173 AVQLSKqlrdKAPEIARRrsGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVK 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 262 VDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDV 341
Cdd:TIGR01817 253 VNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 342 RIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLtPPRLSAAAVERLKRYRW 421
Cdd:TIGR01817 333 RLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRER-REDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKW 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 422 PGNVRELENCIESAVVLCEGEILEE---------------HLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEV 486
Cdd:TIGR01817 411 PGNVRELENCLERTATLSRSGTITRsdfscqsgqclspmlAKTCPHGHISIDPLAGTTPPHSPASAALPGEPGLSGPTLS 490
|
490 500 510
....*....|....*....|....*....|....*....
gi 499873228 487 ERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:TIGR01817 491 ERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNI 529
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
137-525 |
8.13e-113 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 344.08 E-value: 8.13e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 137 VPLRDgDGALYGVLqVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQPQVPVGYFFNR------IIGE 210
Cdd:PRK05022 115 LPLFV-DGRLIGAL-TLDALDPGQFDAFSDEELRALAALAAATLRNALLIEQLESQAELPQDVAEFLRQEalkegeMIGQ 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 211 SPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHR 290
Cdd:PRK05022 193 SPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 291 VPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKV 370
Cdd:PRK05022 273 RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 371 VEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGE-------I 443
Cdd:PRK05022 353 FPLSVPPLRERG-DDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivtL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 444 LEEHLPLPDvdraalpppaAAQGVNAPTAPAPLDAGLLPLAEV----ERRHILRVLDAVKGNRTAAARVLAIGRNTLARK 519
Cdd:PRK05022 432 EAQHLDLPA----------EVALPPPEAAAAPAAVVSQNLREAteafQRQLIRQALAQHQGNWAAAARALELDRANLHRL 501
|
....*.
gi 499873228 520 LKEYGL 525
Cdd:PRK05022 502 AKRLGL 507
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
189-522 |
8.57e-109 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 332.09 E-value: 8.57e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 189 LQRAKEQPQVPVGYFFNR----IIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDC 264
Cdd:TIGR01818 114 LAHAQEQVALPADAGEAEdsaeLIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNM 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 265 AALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIV 344
Cdd:TIGR01818 194 AAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIV 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 345 AATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGN 424
Cdd:TIGR01818 274 AATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRER-REDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGN 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 425 VRELEN-CIESAVVLCEGEILEEHLP--LPDVDRAALPPPAAAQ-------GVNAPTAPAPLDAGLLP--LAEVERRHIL 492
Cdd:TIGR01818 353 VRQLENlCRWLTVMASGDEVLVSDLPaeLALTGRPASAPDSDGQdswdealEAWAKQALSRGEQGLLDraLPEFERPLLE 432
|
330 340 350
....*....|....*....|....*....|
gi 499873228 493 RVLDAVKGNRTAAARVLAIGRNTLARKLKE 522
Cdd:TIGR01818 433 AALQHTRGHKQEAAALLGWGRNTLTRKLKE 462
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
183-524 |
9.91e-108 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 333.01 E-value: 9.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 183 TSLYQELQRAKE-----QPQVP--VGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVH-VNGpr 254
Cdd:NF041552 238 KNLSKELEKAKEkleylEEEVKkiSEDSFGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHqASG-- 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 255 RDQPFIKVDCAALPATLIENELFGHERGAFTGADHR-VPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGG 333
Cdd:NF041552 316 RKGPFVPVNCSAIPEELFESEFFGYEEGAFTGALKKgKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGG 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 334 TQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAV 413
Cdd:NF041552 396 EKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERK-EDIPLLINYFLKEICKENNKEIPKIDKEVY 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 414 ERLKRYRWPGNVRELENCIESAVVLC-EGEILEEHLP---LPDVDRAALPPPaaaqgvnaptaPAPLDagllpLAE---- 485
Cdd:NF041552 475 DILQNYKWKGNIRELKNTIEHLVVLSkNGTITKDSIPeyiLESVKKKEDEEG-----------DYPLD-----LNKavek 538
|
330 340 350
....*....|....*....|....*....|....*....
gi 499873228 486 VERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYG 524
Cdd:NF041552 539 LEIDTIKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
176-525 |
2.97e-106 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 325.65 E-value: 2.97e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 176 VSTALQSTSLYQELqRAKEQpQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRR 255
Cdd:PRK11361 116 VQRALQLQSMKKEI-RHLHQ-ALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 256 DQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQ 335
Cdd:PRK11361 194 KGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQ 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 336 AVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSAAAVER 415
Cdd:PRK11361 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDR-REDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 416 LKRYRWPGNVRELENCIESAVVLCEGE-ILEEHLPLPdvdraalpppaAAQGVNAPTAPAPLDAGLLPLAE----VERRH 490
Cdd:PRK11361 353 LTAWSWPGNIRELSNVIERAVVMNSGPiIFSEDLPPQ-----------IRQPVCNAGEVKTAPVGERNLKEeikrVEKRI 421
|
330 340 350
....*....|....*....|....*....|....*
gi 499873228 491 ILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:PRK11361 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
207-373 |
1.59e-104 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 310.10 E-value: 1.59e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 207 IIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTG 286
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 287 ADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYY 366
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 499873228 367 RIKVVEV 373
Cdd:pfam00158 161 RLNVIPI 167
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
204-526 |
1.85e-104 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 322.52 E-value: 1.85e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 204 FNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGA 283
Cdd:COG3283 203 FDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGA 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 284 FTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFRED 363
Cdd:COG3283 283 FGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFRED 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 364 LYYRIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGEI 443
Cdd:COG3283 363 LYYRLNVLTLTLPPLRERK-SDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 444 LE-EHLPLPDVDRaalpppaaAQGVNAPTAPAPLDagllplAEVER--RHILRVL-DAVKGNRTAAARvLAIGRNTLARK 519
Cdd:COG3283 442 LTpEDLQLPEYAA--------SAGLLDDLLEGSLD------EIVKRfeRSLLRRLyPSYPSTRKLAKR-LGVSHTAIANK 506
|
....*..
gi 499873228 520 LKEYGLG 526
Cdd:COG3283 507 LREYGIG 513
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
207-525 |
2.17e-103 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 317.85 E-value: 2.17e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 207 IIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTG 286
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 287 ADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYY 366
Cdd:TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 367 RIKVVEVVLPPLRERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGEILE- 445
Cdd:TIGR02915 301 RIAEISITIPPLRSRD-GDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITa 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 446 EHLPLPDvdraalpppaaaqgvnAPTAPAPLDAGLLPLAE-VERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYG 524
Cdd:TIGR02915 380 EDLGLDA----------------RERAETPLEVNLREVRErAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHG 443
|
.
gi 499873228 525 L 525
Cdd:TIGR02915 444 I 444
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
180-520 |
1.43e-102 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 315.43 E-value: 1.43e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 180 LQST---SLYQELQRAKEQPQVPVGYFfnRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRD 256
Cdd:PRK10365 113 LQATlekALAHTHSIDAETPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 257 QPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQA 336
Cdd:PRK10365 191 KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQT 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 337 VKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSAAAVERL 416
Cdd:PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQR-REDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 417 KRYRWPGNVRELENCIESAVVLCEGE-ILEEHLPLpdvdraalpppaaaqGVNAPTAPAPLDAGLLPLAEVERRHILRVL 495
Cdd:PRK10365 350 IHYDWPGNIRELENAVERAVVLLTGEyISERELPL---------------AIASTPIPLGQSQDIQPLVEVEKEVILAAL 414
|
330 340
....*....|....*....|....*
gi 499873228 496 DAVKGNRTAAARVLAIGRNTLARKL 520
Cdd:PRK10365 415 EKTGGNKTEAARQLGITRKTLLAKL 439
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
172-525 |
8.67e-97 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 301.40 E-value: 8.67e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 172 IASQVSTALQSTSLYQELQRAKEQPQV-PVgyffNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHV 250
Cdd:PRK10923 108 IDEAVALVERAISHYQEQQQPRNIQVNgPT----TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 251 NGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFER 330
Cdd:PRK10923 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYR 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 331 VGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSA 410
Cdd:PRK10923 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRER-REDIPRLARHFLQVAARELGVEAKLLHP 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 411 AAVERLKRYRWPGNVRELENCIESAVVLCEG-EILEEHLPLPDVDRAALPPPAAAQGVNAPT-----APAPLDAG---LL 481
Cdd:PRK10923 343 ETEAALTRLAWPGNVRQLENTCRWLTVMAAGqEVLIQDLPGELFESTVPESTSQMQPDSWATllaqwADRALRSGhqnLL 422
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 499873228 482 --PLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:PRK10923 423 seAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
126-525 |
6.51e-96 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 305.60 E-value: 6.51e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 126 MTGYRTTSLLAVPLRDGDGALyGVLQvLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQ---------P 196
Cdd:PRK15429 289 TWGNQIQTLCLLPLMSGDTML-GVLK-LAQCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERlvdenlaltE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 197 QVP-VGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENE 275
Cdd:PRK15429 367 QLNnVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 276 LFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMV 355
Cdd:PRK15429 447 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 356 AEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESA 435
Cdd:PRK15429 527 ADREFRSDLYYRLNVFPIHLPPLRER-PEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 436 VVLCEGEILEehLPLPDVdraalpppaaaQGVNAPTAPAPLDagLLPLAEVERRHILRVLD----AVKGNRTAAARvLAI 511
Cdd:PRK15429 606 VLLTRGNVLQ--LSLPDI-----------TLPEPETPPAATV--VAQEGEDEYQLIVRVLKetngVVAGPKGAAQR-LGL 669
|
410
....*....|....
gi 499873228 512 GRNTLARKLKEYGL 525
Cdd:PRK15429 670 KRTTLLSRMKRLGI 683
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
59-525 |
3.36e-89 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 277.50 E-value: 3.36e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 59 LQADRGTLWLLDPARRELFSRAAHLPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRFFADIDRMTGYRTTSLLAVP 138
Cdd:COG3604 1 ALLALRLLGLPLLLLLALALLLLVLLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARERQLFLGVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 139 LRDGDGaLYGVLQVLNRRgEDRFTDEDTQRLTAIASQVSTALqstslyqelqrakeqpqvpvgyffnriigespqlqaiy 218
Cdd:COG3604 81 LRVGGE-VLGVLTLDSRR-PGAFSEEDLRLLETLASLAAVAI-------------------------------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 219 rlvrkaaptdatvllRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENelfghergaftgadhrvpgkfeaa 298
Cdd:COG3604 121 ---------------LGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------------ 161
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 299 sggtvfideigelplpvqgkllrvIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPL 378
Cdd:COG3604 162 ------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPL 217
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 379 RERGaEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGEILEEHLPLPdvdraal 458
Cdd:COG3604 218 RERR-EDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP------- 289
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499873228 459 pppaaaqgvnaptapapldAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:COG3604 290 -------------------GSREALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGI 337
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
205-522 |
2.18e-82 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 266.20 E-value: 2.18e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 205 NRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGP--------RRDQPFIKVDCAALPATLIENEL 276
Cdd:PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 277 FGHERGAFTGADH--RVpGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARM 354
Cdd:PRK15424 299 FGYEEGAFTGSRRggRA-GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 355 VAEGRFREDLYYRIKVVEVVLPPLRERGAeDIERLARHFvaaVARRHRLTPPRLSAAAVERL-------KRYRWPGNVRE 427
Cdd:PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVA-DILPLAESF---LKQSLAALSAPFSAALRQGLqqcetllLHYDWPGNVRE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 428 LENCIESAVVLCEGEileehlPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHilrvldavkGNRTAAAR 507
Cdd:PRK15424 454 LRNLMERLALFLSVE------PTPDLTPQFLQLLLPELARESAKTPAPRLLAATLQQALERFN---------GDKTAAAN 518
|
330
....*....|....*
gi 499873228 508 VLAIGRNTLARKLKE 522
Cdd:PRK15424 519 YLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
202-521 |
3.43e-81 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 262.87 E-value: 3.43e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 202 YFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHER 281
Cdd:TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEE 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 282 GAFTGAdhRVPGK---FEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEG 358
Cdd:TIGR02329 289 GAFTGA--RRGGRtglIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQG 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 359 RFREDLYYRIKVVEVVLPPLRERGAeDIERLARHF--VAAVARRHRLTPPRLS--AAAVERLKRYRWPGNVRELENCIES 434
Cdd:TIGR02329 367 RFRRDLFYRLSILRIALPPLRERPG-DILPLAAEYlvQAAAALRLPDSEAAAQvlAGVADPLQRYPWPGNVRELRNLVER 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 435 AVVLCEGEilEEHLPLPDVDRAALPPPAAAQGVNAPTAPApldagLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRN 514
Cdd:TIGR02329 446 LALELSAM--PAGALTPDVLRALAPELAEASGKGKTSALS-----LRERSRVEALAVRAALERFGGDRDAAAKALGISRT 518
|
....*..
gi 499873228 515 TLARKLK 521
Cdd:TIGR02329 519 TLWRRLK 525
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
184-514 |
1.36e-79 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 255.92 E-value: 1.36e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 184 SLYQELQRAKEQpQVPVG--YFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIK 261
Cdd:PRK15115 112 ALYKAIDDALEQ-SAPATdeRWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 262 VDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDV 341
Cdd:PRK15115 191 INCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 342 RIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRW 421
Cdd:PRK15115 271 RIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAER-TEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 422 PGNVRELENCIESAVVLCEGEILEEHLplpdvdraalpPPAAAQGVNApTAPAPLDAgllpLAEVERRHILRVLDAVKGN 501
Cdd:PRK15115 350 PGNVRQLVNVIEQCVALTSSPVISDAL-----------VEQALEGENT-ALPTFVEA----RNQFELNYLRKLLQITKGN 413
|
330
....*....|...
gi 499873228 502 RTAAARVlaIGRN 514
Cdd:PRK15115 414 VTHAARM--AGRN 424
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
207-526 |
5.44e-75 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 240.34 E-value: 5.44e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 207 IIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTG 286
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 287 ADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYY 366
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 367 RIKVVEVVLPPLRERGAeDIERLARHFVAAVARRHRLTP-PRLSAAAVERLKRYRWPGNVRELENCIESAVVL---CEGE 442
Cdd:PRK11608 168 RLAFDVVQLPPLRERQS-DIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERSVYRhgtSEYP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 443 iLEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLplaEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKE 522
Cdd:PRK11608 247 -LDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLREWQH---QQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
....
gi 499873228 523 YGLG 526
Cdd:PRK11608 323 HQIL 326
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
204-525 |
4.69e-73 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 241.13 E-value: 4.69e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 204 FNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGA 283
Cdd:PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGA 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 284 FTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFRED 363
Cdd:PRK10820 283 YPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFRED 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 364 LYYRIKVVEVVLPPLRERGAeDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGEI 443
Cdd:PRK10820 363 LYYRLNVLTLNLPPLRDRPQ-DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 444 LEEH-LPLPDVDraalpppaaaqgvnaptAPAPLDAGLL--PLAEV----ERRHILRVLDAVKGNRTAAARvLAIGRNTL 516
Cdd:PRK10820 442 LRPQdILLPDYD-----------------AAVAVGEDAMegSLDEItsrfERSVLTRLYRNYPSTRKLAKR-LGVSHTAI 503
|
....*....
gi 499873228 517 ARKLKEYGL 525
Cdd:PRK10820 504 ANKLREYGL 512
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
200-525 |
9.44e-67 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 227.25 E-value: 9.44e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 200 VGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGh 279
Cdd:PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 280 erGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGR 359
Cdd:PRK11388 399 --SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNR 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 360 FREDLYYRIKVVEVVLPPLRERgAEDIERLARHFVAAVARRHRlTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLC 439
Cdd:PRK11388 477 FSRQLYYALHAFEITIPPLRMR-REDIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 440 EGeileEHLPLPDVDRAALPPPAAAQGVNAPTAPapldagLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARK 519
Cdd:PRK11388 555 DN----GRIRLSDLPEHLFTEQATDDVSATRLST------SLSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRK 624
|
....*.
gi 499873228 520 LKEYGL 525
Cdd:PRK11388 625 MKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
204-432 |
8.10e-39 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 148.83 E-value: 8.10e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 204 FNRIIGEspqlqaIYRL-VRKAAPtdatVLLRGESGSGKELFARAVHVNGPRRDQ---PFIKVDCAALPATLIENELFGH 279
Cdd:COG4650 193 FNRLIEQ------IERVaIRSRAP----ILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGH 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 280 ERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGR 359
Cdd:COG4650 263 VKGAFTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 360 FREDLYYRIKVVEVVLPPLRERgAEDIE-----RLARHfvaavARRHRlTPPRLSAAAVERLKRY------RWPGNVREL 428
Cdd:COG4650 343 FREDLLARINLWTFRLPGLAER-REDIEpnldyELARF-----AREQG-RRVRFNKEARARYLAFatspeaLWSGNFRDL 415
|
....
gi 499873228 429 ENCI 432
Cdd:COG4650 416 NASV 419
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
169-432 |
3.68e-28 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 119.06 E-value: 3.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 169 LTAIASQVSTALQSTSLYQELQRAKEQPQVPVgYFFNRIIGESPQL-----QAiyrlvrKAA----PTDATVLLRGESGS 239
Cdd:COG1221 69 KEAFEEQFGTKLKSEYSFVELLAEKENNEEEE-DPFDNLIGANGSLknaieQA------KAAilypPKGLHTLILGPTGV 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 240 GKELFAR-----AVHVNGPRRDQPFIKVDCAAL---PATLIENeLFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGEL 311
Cdd:COG1221 142 GKSFFAElmyeyAIEIGVLPEDAPFVVFNCADYannPQLLMSQ-LFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRL 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 312 PLPVQGKLLRVIqDR-EFERVGGT-QAVKVDVRIVAATHRDL--------ARmvaegrfredlyyRIKVVeVVLPPLRER 381
Cdd:COG1221 221 PPEGQEMLFTFM-DKgIYRRLGETeKTRKANVRIIFATTEDPessllktfLR-------------RIPMV-IKLPSLEER 285
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 499873228 382 GAEdiERLA--RHFVAAVArrHRL-TPPRLSAAAVERLKRYRWPGNVRELENCI 432
Cdd:COG1221 286 SLE--ERLEliKHFFKEEA--KRLnKPIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
37-198 |
3.13e-25 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 102.67 E-value: 3.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 37 LVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAH---LPEVSQIRVKLGQGVAGTVAKAGHAINVPDP 113
Cdd:COG3605 12 AVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEglnPEAVGKVRLPLGEGLVGLVAERGEPLNLADA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 114 RGEQRF-FADIDRMTGYRttSLLAVPLRDGdGALYGVLQVLNRRgEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRA 192
Cdd:COG3605 92 ASHPRFkYFPETGEEGFR--SFLGVPIIRR-GRVLGVLVVQSRE-PREFTEEEVEFLVTLAAQLAEAIANAELLGELRAA 167
|
....*.
gi 499873228 193 KEQPQV 198
Cdd:COG3605 168 LAELSL 173
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
43-190 |
5.23e-22 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 92.44 E-value: 5.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 43 DLDAFLQTLMDRIAITLQADRGTLWLLDPA-RRELFSRAAH--LPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRF 119
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDENdRGELVLVAADglTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499873228 120 FadIDRMTGYR-TTSLLAVPLRdGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQ 190
Cdd:smart00065 81 A--EDLLGRYQgVRSFLAVPLV-ADGELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLYEELR 149
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
208-378 |
8.24e-22 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 91.25 E-value: 8.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 208 IGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLienelfghergaftga 287
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 288 dhrvpgkFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREfervggtqavKVDVRIVAATHRDLARMVAEGRFREDLYYR 367
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 499873228 368 IKVVEVVLPPL 378
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
212-377 |
2.39e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.67 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 212 PQLQAIYRLVRKAA--PTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHErgaftgADH 289
Cdd:cd00009 1 VGQEEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 290 RVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVggtqaVKVDVRIVAATHRDLarmvaEGRFREDLYYRIK 369
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
....*...
gi 499873228 370 vVEVVLPP 377
Cdd:cd00009 145 -IRIVIPL 151
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
43-180 |
1.39e-20 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 87.53 E-value: 1.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 43 DLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHLPEVSQIRVKLGQGVagTVAKAGHAINVPDPRGEQRFFAD 122
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPDADGLEYLPPGARWLKAAGLEIPPGTGV--TVLRTGRPLVVPDAAGDPRFLDP 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 499873228 123 IDRMTGYRTTSLLAVPLRDgDGALYGVLQVLNRRgeDRFTDEDTQRLTAIASQVSTAL 180
Cdd:pfam01590 79 LLLLRNFGIRSLLAVPIID-DGELLGVLVLHHPR--PPFTEEELELLEVLADQVAIAL 133
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
37-518 |
1.05e-11 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 67.53 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 37 LVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAA-HLPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRG 115
Cdd:COG2203 201 ALRSALDLEELLQRILELAGELLGADRGAILLVDEDGGELELVAApGLPEEELGRLPLGEGLAGRALRTGEPVVVNDAST 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 116 EQRFFA-DIDRMTGYRTTSLLAVPLRDgDGALYGVLQVLNRRgEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKE 194
Cdd:COG2203 281 DPRFAPsLRELLLALGIRSLLCVPLLV-DGRLIGVLALYSKE-PRAFTEEDLELLEALADQAAIAIERARLYEALEAALA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 195 QpqvpvgyffNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIEN 274
Cdd:COG2203 359 A---------LLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLLLLDLLLL 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 275 ELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARM 354
Cdd:COG2203 430 LLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSALAVLASL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 355 VAEGRFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIES 434
Cdd:COG2203 510 LLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELALALILALAL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 435 AVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRN 514
Cdd:COG2203 590 LELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLLRALLATELDLILD 669
|
....
gi 499873228 515 TLAR 518
Cdd:COG2203 670 SSLL 673
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
483-525 |
2.35e-11 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 59.83 E-value: 2.35e-11
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 499873228 483 LAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:COG2901 40 LAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
41-181 |
2.84e-11 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 61.33 E-value: 2.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 41 EVDLDAFLQTLMDRiAITLQADR-GTLWLLDPARRELFSRAAHLPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRF 119
Cdd:pfam13185 1 AADLEELLDAVLEA-AVELGASAvGFILLVDDDGRLAAWGGAADELSAALDDPPGEGLVGEALRTGRPVIVNDLAADPAK 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499873228 120 FADIDRMTGYRttSLLAVPLRDgDGALYGVLqVLNRRGEDRFTDEDTQRLTAIASQVSTALQ 181
Cdd:pfam13185 80 KGLPAGHAGLR--SFLSVPLVS-GGRVVGVL-ALGSNRPGAFDEEDLELLELLAEQAAIAIE 137
|
|
| GAF_3 |
pfam13492 |
GAF domain; |
43-181 |
3.47e-11 |
|
GAF domain;
Pssm-ID: 433253 [Multi-domain] Cd Length: 129 Bit Score: 60.85 E-value: 3.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 43 DLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAA-HLPEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEqrffa 121
Cdd:pfam13492 1 SLDEILEALLKLLVRLLGAERAAVYLLDEDGNKLQVAAGyDGEPDPSESLDADSPLARRALSSGEPISGLGSAGE----- 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 122 didrmTGYRTTSLLAVPLRDGDGaLYGVLqVLNRRGEDRFTDEDTQRLTAIASQVSTALQ 181
Cdd:pfam13492 76 -----DGLPDGPALVVPLVAGRR-VIGVL-ALASSKPRAFDAEDLRLLESLAAQIATAIE 128
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
230-367 |
8.32e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 230 TVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIE--NELFGHERGAFTGADHRVPGKFEAA---SGGTVF 304
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499873228 305 IDEIGELPLPVQGKLLRVIqdrEFERVGGTQAVKVDVRIVAATHR--DLARMVAEGRFREDLYYR 367
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
483-522 |
1.05e-09 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 53.55 E-value: 1.05e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 499873228 483 LAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKE 522
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| MsrC |
COG1956 |
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, ... |
36-180 |
2.93e-09 |
|
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms];
Pssm-ID: 441559 [Multi-domain] Cd Length: 156 Bit Score: 55.99 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 36 GLVGREVDLDAFLQTLMDRIAITLQ-ADRGTLWLLDPaRRELFSRAAHLPeVSQIRVKLGQGVAGTVAKAGHAINVPdpr 114
Cdd:COG1956 18 ALLAGETDLIANLANISALLFEALPdYNWVGFYLVDG-GGELVLGPFQGP-PACTRIPFGKGVCGTAAAEGETQLVP--- 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499873228 115 geqrffaDIDRMTGY-----RTTSLLAVPLRDgDGALYGVLQVLNRRgEDRFTDEDTQRLTAIASQVSTAL 180
Cdd:COG1956 93 -------DVHAFPGHiacdsASRSEIVVPIFK-DGEVIGVLDIDSPT-PGRFDEEDQAGLEALAALLAEAL 154
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
481-526 |
1.60e-07 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 49.29 E-value: 1.60e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 499873228 481 LPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGLG 526
Cdd:PRK00430 50 LVLAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGMN 95
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
231-349 |
1.10e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 48.06 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499873228 231 VLLRGESGSGK----ELFARAVhvngpRRDQPFIKvdcaALPATLIENELFGHERGAfTGADHRVPGKF--EAASGGTVF 304
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAAL-----SNRPVFYV----QLTRDTTEEDLFGRRNID-PGGASWVDGPLvrAAREGEIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 499873228 305 IDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKV---DVRIVAATHR 349
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNP 119
|
|
| COG4567 |
COG4567 |
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ... |
469-521 |
1.52e-04 |
|
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 443624 [Multi-domain] Cd Length: 177 Bit Score: 42.60 E-value: 1.52e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 499873228 469 APTAPAPLDAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLK 521
Cdd:COG4567 119 AEGDAPAPPENPMSLDRLEWEHIQRVLAECDGNISATARALGMHRRTLQRKLA 171
|
|
| PRK01905 |
PRK01905 |
Fis family transcriptional regulator; |
483-525 |
7.98e-04 |
|
Fis family transcriptional regulator;
Pssm-ID: 179348 [Multi-domain] Cd Length: 77 Bit Score: 38.25 E-value: 7.98e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 499873228 483 LAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525
Cdd:PRK01905 34 LSCVEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGL 76
|
|
| |
